WikiPathways: Pathway Editing for the People

Pico, Alexander R, Kelder, Thomas, van Iersel, Martijn P, Hanspers, Kristina, Conklin, Bruce R, Evelo, Chris·2008·PLoS Biology

Cited by (732)

Items 701–732 of 732

  1. Additional file 17 of Robustness evaluations of pathway activity inference methods on gene expression data
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  2. Additional file 6 of Transcriptomic changes in peripheral blood mononuclear cells with weight loss: systematic literature review and primary data synthesis
    Day, Kaitlin, Aimee L. Dordevic, Helen Truby, Melissa C. Southey, Susan L. Coort, Chiara Murgia · 2021 · Figshare
  3. Additional file 11 of Robustness evaluations of pathway activity inference methods on gene expression data
    Tay Xin Hui, Kasim, Shahreen, Aziz, Izzatdin Abdul, MOHD FARHAN MD FUDZEE, Nazleeni Samiha Haron, Sutikno, Tole, rohayanti binti hassan, Mahdin, Hairulnizam, Sen, Seah Choon · 2024 · Figshare
  4. Additional file 1 of Sodium-glucose cotransporter 2 inhibitors induce anti-inflammatory and anti-ferroptotic shift in epicardial adipose tissue of subjects with severe heart failure
    Barbora Judita Kasperová, Mraz, Milos, Petr Svoboda, Daniel Hlaváček, Helena Kratochvílová, István Módos, Nikola Vrzáčková, Ivak, Peter, Petra Janovská, Tatyana Kobets et al. · 2024 · Figshare
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    Venkat Suprabath Bitra, Reddy Rani Vangimalla, Jaya Sreevalsan‐Nair · 2025 · IEEE Transactions on Computational Biology and Bioinformatics
  6. Beyond Single Variants: A Pathway-Based Approach to Explore the Genetic Basis of Memory
    Daan van Beek, Martina Kutmon, Theo M. C. M. de Kok, Ilja C.W. Arts, Michelle Moerel, Michiel E. Adriaens · 2026 · Molecular Neurobiology
  7. Exploring Common Molecular Interactions across Multiple Cancers to Identify Potential Therapeutic Targets and Drug Candidates
    Sourav Basak Shuvo, Sraboni Hossain, Shaira Afra Redhila, Urmi Bose · 2025 · International Conference on Electrical Information and Communication Technology (EICT)
  8. Tissue-Specific Multi-Omics Integration Demonstrates Molecular Signatures Connecting Obesity to Immune Vulnerability
    Ozge Onluturk Aydogan, Aytac Dursun Oksuzoglu, Beste Turanlı · 2026 · Metabolites
  9. Xylooligosaccharide in combination with Lactobacillus rhamnosus ameliorates disturbed circadian rhythm and associated neurological internal desynchronization by maintaining homeostasis of neuroactive molecules and gut microbiome
    Rutuja Murlidhar Sonkar, Pravin Savata Gade, Praveena Bhatt · 2026 · Archives of Microbiology
  10. Consensus co-expression analysis identifies a common set of co-expressed genes associated with diabetic peripheral neuropathy and chemotherapy-induced peripheral neuropathy
    Kord M. Kober, Esther Chavez-Iglesias, Nam Woo Cho, Sue Sun Yom, Niharika Dixit, Marina Sirota, Alexandre Chan, Adam B. Olshen · 2026 · Molecular Pain
  11. Machine learning-based proteogenomic data modeling identifies circulating plasma biomarkers for early detection of lung cancer
    Marcela A. Johnson, Shirley Nieves‐Rodriguez, Liping Hou, Bevan Emma Huang, Assieh Saadatpour, Abolfazl Doostparast Torshizi · 2026 · Communications Medicine
  12. Modélisation hybride, analyse et vérification quantitative des grands réseaux de régulation biologique
    Louis Fippo Fitime · 2016 · theses.fr (ABES)
  13. Etude de la composante génétique de la Polyarthrite Rhumatoïde par séquençage d'exomes : contribution des variants rares
    Maëva Veyssière · 2019
  14. Étude de la dynamique des réseaux biologiques : apprentissage des modèles, intégration des données temporelles et analyse formelle des propriétés dynamiques
    Emna Ben Abdallah · 2017
  15. Development of new computational methods for a synthetic gene set annotation
    Aarón Ayllón-Benítez · 2019
  16. Étude multi-omics des mutations des isocitrates déshydrogénases dans les leucémies aiguës myéloïdes
    Alexis Hucteau · 2023 · theses.fr (ABES)
  17. WayFindR: investigating feedback in biological pathways
    Polina Bombina, Reginald L. McGee, Jake Reed, Zachary B. Abrams, Lynne V. Abruzzo, Kevin R. Coombes · 2026 · NAR Genomics and Bioinformatics
  18. An ITGA11 expressing subpopulation as predictor for the donor-specific osteogenic capacity of stromal cells
    Ali Jasim Mohammad Jamil, Kaja Madsen, Souad Daamouch, Birgitte Villadsen, Chao Ma, Shakespeare Jeromdesella, Mikkel Ørnfeldt Nørgård, Emilie Grupe, Maria Bruun Jakobsson, Yuting Wang et al. · 2026 · Bone Research
  19. Oestrogen receptor phosphorylation profiles and in silico PAM50 subtyping reflect sexual dimorphism in breast cancer
    Subarnarekha Chatterji, Aimee Diack, Marcin Szostok, Michael David Morgan, Valentina Silvestri, Laura Ottini, Cathy Beatrice Moelans, P. J. van Diest, Çiğdem Selli, Andrew H. Sims et al. · 2026 · The Journal of Pathology Clinical Research
  20. Integrated proteogenomic profiling reveals coordinated differential expression signatures during neuroinflammation
    Elena Prepoudis, Sabina Pfister, Andreas Hofmann, Marc Altorfer, Marco Catalano, Miriam Sindelar, Pamela Ramseier, Frédérique Lafossas, Sarah Tisserand, Tobias Junt et al. · 2026 · Acta Neuropathologica Communications
  21. Integrated histone and proteome analyses reveal convergent and distinct hepatotoxic mechanisms of tenuazonic acid and deoxynivalenol
    Yasmine Bader, Ruben Almey, Thijs Lefever, A. De Maesschalck, Thanos Mouchtaris Michailidis, Tess Goessens, Sarah De Saeger, Tine Claeys, Simon Daled, Marthe De Boevre et al. · 2026 · Journal of Hazardous Materials
  22. WikiPathways: biological pathways across the species
    Egon Willighagen · 2026
  23. WikiPathways: biological pathways across the species
    Egon Willighagen · 2026
  24. Donor Age Impairs Vasculogenic Potential of hiPSC-Derived Endothelial Progenitors via Elevated Mitochondrial Reactive Oxygen Species
    Bryce Larsen, Cody J. Callahan, Arshitha Rayanki, Anna K. McClain, Weixuan Wu, Sara Faulkner, Janet Zoldan · 2026 · Research Square
  25. SpacePath enables pathway and molecular-family analysis beyond annotation ambiguity in spatial metabolomics and lipidomics
    Johanna Galvis, Mélanie Moreau, Sebastian Lillo, Doriane Bomont, Léa Ledoux, Yanis Zirem, Michel Salzet, Isabelle Fournier, Nicolas Desbenoît, Thomas Daubon et al. · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
  26. FAIRsharing record for: BIOchemical PathwaY DataBase
    FAIRsharing Team, Allyson Lister · 2018 · FAIRsharing.org
  27. FAIRsharing record for: The Network Data Exchange
    FAIRsharing Team, The NDEx Project, The NDEx Project · 2018 · FAIRsharing.org
  28. FAIRsharing record for: Biological Pathway eXchange
    FAIRsharing Team · 2015 · FAIRsharing.org
  29. FAIRsharing record for: Pathway and Annotated-list Gene-signature Electronic Repository
    FAIRsharing Team, Zongliang Yue · 2018 · FAIRsharing.org
  30. FAIRsharing record for: BridgeDb
    FAIRsharing Team, Egon Willighagen · 2018 · FAIRsharing.org
  31. Understanding regulation of gene transcription through epigenomics and cistromics : unfolding ones and zeros into (un)folding chromatin
    Michiel E. Adriaens · 2012
  32. A Visual Cross-Database Comparison of Metabolic Networks
    Markus Rohrschneider, Peter Florian Stadler, Gerik Scheuermann · 2012 · Lecture notes in computer science