WikiPathways: Pathway Editing for the People

Cited by (732)

Items 301–400 of 732

1. Graph cluster approach in identifying novel proteins and significant pathways involved in polycystic ovary syndrome
   Nor Afiqah‐Aleng, Md. Altaf‐Ul‐Amin, Shigehiko Kanaya, Zeti‐Azura Mohamed‐Hussein · 2019 · Reproductive BioMedicine Online
2. Identifying molecular insight of synergistic complexities for SARS-CoV-2 infection with pre-existing type 2 diabetes
   Md. Babul Islam, Utpala Nanda Chowdhury, Zulkar Nain, Shahadat Uddin, Mohammad Boshir Ahmed, Mohammad Ali Moni · 2021 · Computers in Biology and Medicine
3. Use of Logic Theory in Understanding Regulatory Pathway Signaling in Response to Infection
   Steven Watterson, Peter Ghazal · 2010 · Future Microbiology
4. Fusion methodologies for biomedical data
   Georgia Tsiliki, Σοφία Κοσσίδα · 2011 · Journal of Proteomics
5. Pathway-Informed Classification System (PICS) for Cancer Analysis Using Gene Expression Data
   Michael R. Young, David Craft · 2016 · Cancer Informatics
6. Microarray-Based Gene Expression Analysis for Veterinary Pathologists: A Review
   Barbara B. Raddatz, Ingo Spitzbarth, Katja A. Matheis, Arno Kalkuhl, Ulrich Deschl, Wolfgang Baumgärtner, Reiner Ulrich · 2017 · Veterinary Pathology
7. Hypertrophic cardiomyopathy–associated mutations drive stromal activation via EGFR-mediated paracrine signaling
   Jourdan K. Ewoldt, Miranda C. Wang, Micheal A. McLellan, Paige E. Cloonan, Anant Chopra, Joshua Gorham, Linqing Li, Daniel M. DeLaughter, Xining Gao, Josh Lee et al. · 2024 · Science Advances
8. Fine‐mapping the 2q37 and 17q11.2‐q22 loci for novel genes and sequence variants associated with a genetic predisposition to prostate cancer
   Virpi H. Laitinen, Tommi Rantapero, Daniel Fischer, Elisa M. Vuorinen, Teuvo L.J. Tammela, Tiina Wahlfors, Johanna Schleutker · 2014 · International Journal of Cancer
9. Pathway Distiller - multisource biological pathway consolidation
   Mark S. Doderer, Zachry Anguiano, Uthra Suresh, Dashnamoorthy Ravi, Alexander J.R. Bishop, Yidong Chen · 2012 · BMC Genomics
10. Pathprinting: An integrative approach to understand the functional basis of disease
    G. Altschuler, Oliver Hofmann, Irina Kalatskaya, Rebecca Payne, Shan-Nan-Ho J. Sui, Uma Saxena, A. Krivtsov, S. Armstrong, T. Cai, L. Stein et al. · 2013 · Genome Medicine
11. CHOmics: A web-based tool for multi-omics data analysis and interactive visualization in CHO cell lines
    Dongdong Lin, Hima Bindu Yalamanchili, Xinmin Zhang, Nathan E. Lewis, Christina S. Alves, Joost C. W. de Groot, Johnny Arnsdorf, Sara Petersen Bjørn, Tune Wulff, Bjørn Gunnar Rude Voldborg et al. · 2020 · PLoS Computational Biology
12. Identification of Immune-Related Risk Signatures for the Prognostic Prediction in Oral Squamous Cell Carcinoma
    Chen Zou, Dahong Huang, Haigang Wei, Siyuan Wu, Jing Song, Zhe Tang, Xia Li, Yilong Ai · 2021 · Journal of Immunology Research
13. ReNE: A Cytoscape Plugin for Regulatory Network Enhancement
    Gianfranco Michele Maria Politano, Alfredo Benso, Alessandro Savino, Stefano Di Carlo · 2014 · PLoS ONE
14. Current Trends and New Challenges of Databases and Web Applications for Systems Driven Biological Research
    Pradeep Kumar Sreenivasaiah, Do Han Kim · 2010 · Frontiers in Physiology
15. Translating standards into practice – One Semantic Web API for Gene Expression
    Helena Deus, Eric Prud’hommeaux, Michael Miller, Jun Zhao, JAMES M. MALONE, Tomasz Adamusiak, Jim McCusker, Sudeshna Das, Philippe Rocca‐Serra, Ronan Fox et al. · 2012 · Journal of Biomedical Informatics
16. XMetDB: an open access database for xenobiotic metabolism
    Ola Spjuth, Patrik Rydberg, Egon Willighagen, Chris T. Evelo, Nina Jeliazkova · 2016 · Journal of Cheminformatics
17. A pathway-centered analysis of pig domestication and breeding in Eurasia
    Leno-Colorado, Jordi, Hudson, Nick J, Reverter, Antonio, Pérez-Enciso, Miguel · 2017 · G3 Genes Genomes Genetics
18. Adding biological meaning to human protein-protein interactions identified by yeast two-hybrid screenings: A guide through bioinformatics tools
    Juliana Felgueiras, Joana Vieira Silva, Margarida Fardilha · 2017 · Journal of Proteomics
19. Fluid flow shear stress and tissue remodeling—an orthodontic perspective: evidence synthesis and differential gene expression network analysis
    Mustafa Nile, Matthias Folwaczny, Andrea Wichelhaus, Uwe Baumert, Mila Janjić Ranković · 2023 · Frontiers in Bioengineering and Biotechnology
20. Data-Driven Characterization of Genetic Variability in Disease Pathways and Pesticide-Induced Nervous System Disease in the United States Population
    Marissa B. Kosnik, Philipp Antczak, Peter Fantke · 2024 · Environmental Health Perspectives
21. Basic Gene Expression Characteristics of Glioma Stem Cells and Human Glioblastoma
    Daisuke Sakamoto, Toshinori Takagi, Mitsugu Fujita, Seiichi Omura, Yasunori Yoshida, Tomoko Iida, Shinichi Yoshimura · 2019 · Anticancer Research
22. Elevated TGFβ signaling contributes to ocular anterior segment dysgenesis in Col4a1 mutant mice
    Mao Mao, Cassandre Labelle‐Dumais, Sara F. Tufa, Douglas R. Keene, Douglas B. Gould · 2022 · Matrix Biology
23. Structurally-Discovered KLF4 Variants Accelerate and Stabilize Reprogramming to Pluripotency
    Evgeniia Borisova, Ken Nishimura, Yuri An, Miho Takami, Jingyue Li, Dan Song, Mami Matsuo‐Takasaki, Dorian G. Luijkx, Shiho Aizawa, Akihiro Kuno et al. · 2020 · iScience
24. The role of bioinformatics in pathway curation
    Andra Waagmeester, Thomas Kelder, Chris T. Evelo · 2008 · Genes & Nutrition
25. Biological knowledge bases using Wikis: combining the flexibility of Wikis with the structure of databases
    Sylvain Brohée, Roland Barriot, Yves Moreau · 2010 · Bioinformatics
26. Aging Chart: a community resource for rapid exploratory pathway analysis of age-related processes
    Alexey Moskalev, Svetlana O. Zhikrivetskaya, Mikhail Vyacheslavovich Shaposhnikov, Evgenia Dobrovolskaya, Roman Gurinovich, Oleg Kuryan, Alexander Pashuk, Leslie C. Jellen, Alex Aliper, Alex Peregudov et al. · 2015 · Nucleic Acids Research
27. An Integrative Analysis of Preeclampsia Based on the Construction of an Extended Composite Network Featuring Protein-Protein Physical Interactions and Transcriptional Relationships
    Daniel Vaiman, Francisco Miralles · 2016 · PLoS ONE
28. Uncovering stem cell differentiation factors for salivary gland regeneration by quantitative analysis of differential proteomes
    Yun-jong Park, J. Koh, Jin Kwon, Yong-Seok Park, Lijun Yang, S. Cha · 2017 · PLoS ONE
29. Genetic Algorithm for Community Detection in Biological Networks
    Marwa Ben M’barek, Amel Borgi, Walid Bedhiafi, Sana Ben Hamida · 2018 · Procedia Computer Science
30. COWB: A cloud-based framework supporting collaborative knowledge management within biomedical communities
    Nicoletta Dessì, Gabriele Milia, Emanuele Pascariello, Barbara Pes · 2015 · Future Generation Computer Systems
31. Microbiomes for All
    Theodore R. Muth, Avrom J. Caplan · 2020 · Frontiers in Microbiology
32. Vitamin D analog calcitriol for breast cancer therapy; an integrated drug discovery approach
    B. S. Nagaraj, P. K. Krishnan Namboori, Akey Krishna Swaroop, Sathianarayanan Sankaran, Rajesh Raman, Jawahar Natarajan, Jubie Selvaraj · 2023 · Journal of Biomolecular Structure and Dynamics
33. Proteomic profiling of salivary gland after nonviral gene transfer mediated by conventional plasmids and minicircles
    Ramaz Geguchadze, Zhimin Wang, Lee Zourelias, Paola Pérez Riveros, Paul C. Edwards, Laurie L. Machen, Michael J. Passineau · 2014 · Molecular Therapy — Methods & Clinical Development
34. Signalling pathway database usability: lessons learned
    Paolo Tieri, Christine Nardini · 2013 · Molecular BioSystems
35. WikiCell: A Unified Resource Platform for Human Transcriptomics Research
    Dongyu Zhao, Jiayan Wu, Yuanyuan Zhou, Wei Gong, Jingfa Xiao, Jun Myoung Yu · 2012 · OMICS A Journal of Integrative Biology
36. Consensus and conflict cards for metabolic pathway databases
    Miranda D. Stobbe, Morris A. Swertz, Ines Thiele, Trebor Rengaw, Antoine H. C. van Kampen, Perry D. Moerland · 2013 · BMC Systems Biology
37. RDF SKETCH MAPS - KNOWLEDGE COMPLEXITY REDUCTION FOR PRECISION MEDICINE ANALYTICS
    Nattapon Thanintorn, Juexin Wang, Ilker Ersoy, Zainab Al-Taie, Yuexu Jiang, Duolin Wang, Megha Verma, Trupti Joshi, Richard Hammer, Dong He Xu et al. · 2015 · Pacific Symposium on Biocomputing (PSB)
38. Enriching Nanomaterials Omics Data: An Integration Technique to Generate Biological Descriptors
    Georgia Tsiliki, Penny E. H. Nymark, Pekka J. Kohonen, Roland Grafström, Haralambos Sarimveis · 2017 · Small Methods
39. Severity of COVID-19 patients with coexistence of asthma and vitamin D deficiency
    Md. Babul Islam, Utpala Nanda Chowdhury, Md Asif Nashiry, Mohammad Ali Moni · 2022 · Informatics in Medicine Unlocked
40. GeneShelf: A Web-based Visual Interface for Large Gene Expression Time-Series Data Repositories
    Bohyoung Kim, Bongshin Lee, Susan M. Knoblach, Eric P. Hoffman, Jinwook Seo · 2009 · IEEE Transactions on Visualization and Computer Graphics
41. Subpathway-CorSP: Identification of metabolic subpathways via integrating expression correlations and topological features between metabolites and genes of interest within pathways
    Chenchen Feng, Jian Zhang, Xuecang Li, Bo Ai, Junwei Han, Qiuyu Wang, Taiming Wei, Yong Jie Xu, Meng Li, Shang Li et al. · 2016 · Scientific Reports
42. PCOSBase: a manually curated database of polycystic ovarian syndrome
    Nor Afiqah‐Aleng, Sarahani Harun, Mohd Rusman Arief A-Rahman, Nor Azlan Nor Muhammad, Zeti‐Azura Mohamed‐Hussein · 2017 · Database
43. Transcriptomic changes in peripheral blood mononuclear cells with weight loss: systematic literature review and primary data synthesis
    Kaitlin Day, Aimee L. Dordevic, Helen Truby, Melissa C. Southey, Susan L. Coort, Chiara Murgia · 2021 · Genes & Nutrition
44. NAViGaTOR: Large Scalable and Interactive Navigation and Analysis of Large Graphs
    Amira Djebbari, Muhammad Asri Mohd Ali, David Otasek, Max Kotlyar, Kristen Fortney, Serene Wong, Anthony Hrvojic, Igor Jurišica · 2011 · Internet Mathematics
45. Cis-regulatory mutations associate with transcriptional and post-transcriptional deregulation of gene regulatory programs in cancers
    Jaime Abraham Castro-Mondragon, Miriam R. R. Aure, Ole Christian Lingjærde, Anita Langerød, John W.M. Martens, Anne‐Lise Børresen‐Dale, Vessela Nedelcheva Kristensen, Anthony Mathelier · 2022 · Nucleic Acids Research
46. Using published pathway figures in enrichment analysis and machine learning
    Min‐Gyoung Shin, Alexander R. Pico · 2023 · BMC Genomics
47. Empirical Characterization of False Discovery Rates of Differentially Expressed Genes and Transcriptomic Benchmark Concentrations in Zebrafish Embryos
    Hyojin Lee, John D. H. Stead, Andrew Williams, Sergio Alberto Cortés-Ramírez, Ella Atlas, Jan Alexander Mennigen, Jason M. O’Brien, Carole Lyn Yauk · 2024 · Environmental Science & Technology
48. Circulating miRNAs in the Plasma of Post-COVID-19 Patients with Typical Recovery and Those with Long-COVID Symptoms: Regulation of Immune Response-Associated Pathways
    Anna M. Timofeeva, Artem O. Nikitin, Georgy A. Nevinsky · 2024 · Non-Coding RNA
49. Specific cancer types and prognosis in patients with variations in the KEAP1 ‐ NRF2 system: A retrospective cohort study
    Tomoyuki Iwasaki, Hidekazu Shirota, Keiju Sasaki, Kota Ouchi, Yuki Nakayama, Hiroyuki Oshikiri, Akihito Otsuki, Takafumi Suzuki, Masayuki Yamamoto, Chikashi Ishioka · 2024 · Cancer Science
50. Linking genes to diseases with a SNPedia-Gene Wiki mashup
    Benjamin M. Good, Erik Clarke, Salvatore Loguercio, Andrew I. Su · 2012 · Journal of Biomedical Semantics
51. Cytokine enrichment in deep cerebellar nuclei is contributed by multiple glial populations and linked to reduced amyloid plaque pathology
    Jessica Ruth Gaunt, Norliyana Zainolabidin, Alaric K. K. Yip, Jia Min Tan, Aloysius Y. T. Low, Albert I. Chen, Toh Hean Ch’ng · 2023 · Journal of Neuroinflammation
52. Transcriptome analysis in cardiomyocyte-specific differentiation of murine embryonic stem cells reveals transcriptional regulation network
    Lin Gan, Silke Schwengberg, Bernd Denecke · 2014 · Gene Expression Patterns
53. BioMiner: Paving the Way for Personalized Medicine
    Chris Bauer, Karol Stec, Alexander Glintschert, Kristina Gruden, Christian Schichor, Michal Or‐Guil, Joachim Selbig, Johannes Schuchhardt · 2015 · Cancer Informatics
54. PathVar: analysis of gene and protein expression variance in cellular pathways using microarray data
    Enrico Glaab, Reinhard Schneider · 2011 · Bioinformatics
55. Wnt signalling in anin vitroniche model for conjunctival progenitor cells
    Stefan Schrader, Anna R. O’Callaghan, Stephen J. Tuft, Michèle Beaconsfield, Gerd Geerling, Julie T. Daniels · 2012 · Journal of Tissue Engineering and Regenerative Medicine
56. Analyzing alternative splicing data of splice junction arrays from Parkinson patients' leukocytes before and after deep brain stimulation as compared with control donors
    Lilach Soreq, Nathan Salomonis, Zvi H. Israel, Hagai Bergman, Hermona Soreq · 2015 · Genomics Data
57. Qrator: A web-based curation tool for glycan structures
    Matthew Eavenson, Krys J. Kochut, John Arthur Miller, René Ranzinger, Michael Tiemeyer, Kazuhiro Aoki, William S. York · 2014 · Glycobiology
58. CyFi-MAP: an interactive pathway-based resource for cystic fibrosis
    Catarina S. Pereira, Alexander Mazein, Carlos Miguel Farinha, Michael A. Gray, Karl Kunzelmann, Marek Ostaszewski, Irina Balaur, Margarida Duarte Amaral, André O. Falcão · 2021 · Scientific Reports
59. Oxygen-induced pathological angiogenesis promotes intense lipid synthesis and remodeling in the retina
    Alex Inague, Lilian Costa Alecrim, Jhonatas Sirino Monteiro, Marcos Yukio Yoshinaga, João Carlos Setúbal, Sayuri Miyamoto, Ricardo J. Giordano · 2023 · iScience
60. Effect of serum amyloid A1 treatment on global gene expression in THP-1-derived macrophages
    Koon-Yeow Leow, Wilson Wen Bin Goh, Chew‐Kiat Heng · 2012 · Inflammation Research
61. A Provisional Gene Regulatory Atlas for Mouse Heart Development
    Hailin Chen, Vincent VanBuren · 2014 · PLoS ONE
62. PathVisio-Faceted Search: an exploration tool for multi-dimensional navigation of large pathways
    Jake Y. Fried, Martijn van Iersel, Mirit I. Aladjem, Kurt W. Kohn, Augustin Luna · 2013 · Bioinformatics
63. Computational Tools for the Interactive Exploration of Proteomic and Structural Data
    John H. Morris, Elaine C. Meng, Thomas E. Ferrin · 2010 · Molecular & Cellular Proteomics
64. Comprehensive pathway enrichment analysis workflows: COVID-19 case study
    Giuseppe Agapito, Chiara Pastrello, Igor Jurišica · 2020 · Briefings in Bioinformatics
65. Multi-Staged Data-Integrated Multi-Omics Analysis for Symptom Science Research
    Carolyn Harris, Christine A. Miaskowski, Anand Dhruva, Janine K. Cataldo, Kord M. Kober · 2021 · Biological Research For Nursing
66. Science wikinomics
    Andrea C. Rinaldi · 2009 · EMBO Reports
67. Role of a Web-based Software Platform for Systems Biology
    Nicolas Turenne · 2011 · Journal of Computer Science & Systems Biology
68. Shared Gene Expression Between Multiple Sclerosis and Ischemic Stroke
    He Li, Lin Chen, Xiaofeng Ma, Pan Cui, Wenjing Lang, Junwei Hao · 2019 · Frontiers in Genetics
69. A Small Molecule Agonist of Krüppel-Like Factor 15 in Proteinuric Kidney Disease
    Yiqing Guo, Nehaben A. Gujarati, Andrew K. Chow, Brock T. Boysan, Robert D. Bronstein, Cijiang He, Monica Patricia Revelo, Navjotsingh Pabla, Robert C. Rizzo, Bhaskar C. Das et al. · 2024 · Journal of the American Society of Nephrology
70. Novel approaches to develop community-built biological network models for potential drug discovery
    Marja Talikka, Natalia Bukharov, William S. Hayes, Martin Hofmann‐Apitius, Leonidas G. Alexopoulos, Manuel C. Peitsch, Julia Hoeng · 2017 · Expert Opinion on Drug Discovery
71. Comprehensive analysis of microRNAs and their target genes in oral submucous fibrosis
    Padacherri Vethil Jishnu, Sangeetha U. Shenoy, Mohit Sharma, Aditi Chopra, Raghu Anekal Radhakrishnan · 2022 · Oral Diseases
72. Individualized discovery of rare cancer drivers in global network context
    Iurii Petrov, Andrey Alexeyenko · 2022 · eLife
73. Conserved Transcriptome Features Define Prepubertal Primate Spermatogonial Stem Cells as Adark Spermatogonia and Identify Unique Regulators
    Anukriti Singh, Brian P. Hermann · 2023 · International Journal of Molecular Sciences
74. Mining the Gene Wiki for functional genomic knowledge
    Benjamin M. Good, Douglas G. Howe, Simon M. Lin, Warren A. Kibbe, Andrew I. Su · 2011 · BMC Genomics
75. Transcriptional profiling revealed the anti-proliferative effect of MFN2 deficiency and identified risk factors in lung adenocarcinoma
    Yuqing Lou, Yanwei Zhang, Rong Li, Ping Gu, Liwen Xiong, Hua Zhong, Wei Zhang, Baohui Han · 2016 · Tumor Biology
76. GiANT: gene set uncertainty in enrichment analysis
    Florian T. Schmid, Matthias C. Schmid, Christoph Müssel, Eric Sträng, Christian Buske, Lars Bullinger, Johann Michael Kraus, Hans Armin Kestler · 2016 · Bioinformatics
77. TGF-ß1 Induces Changes in the Energy Metabolism of White Adipose Tissue-Derived Human Adult Mesenchymal Stem/Stromal Cells In Vitro
    Olga Hahn, Lena-Christin Ingwersen, Abdelrahman Soliman, Mohamed Hamed, Georg Fuellen, Markus Wolfien, Julia Scheel, Olaf Wolkenhauer A, Dirk Koczan, Günter Kamp et al. · 2020 · Metabolites
78. Metabolomic and transcriptomic profiling of adult mice and larval zebrafish leptin mutants reveal a common pattern of changes in metabolites and signaling pathways
    Yi Ding, Mariëlle C. Haks, Gabriel Forn‐Cuní, Junling He, Natalia Nowik, Amy C. Harms, Thomas Hankemeier, Muhamed N. H. Eeza, Jörg Matysik, A. Alia et al. · 2021 · Cell & Bioscience
79. Unveiling the genetic variation of severe continuous/mixed-type ossification of the posterior longitudinal ligament by whole-exome sequencing and bioinformatic analysis
    Chang-Hyun Lee, Ki Tae Kim, Chi Heon Kim, Eun Young Lee, Sang Gu Lee, Myung-Eui Seo, Ju Han Kim, Chun Kee Chung · 2021 · The Spine Journal
80. Bioinformatics for the NuGO proof of principle study: analysis of gene expression in muscle of ApoE3*Leiden mice on a high-fat diet using PathVisio
    Susan L. Coort, Martijn van Iersel, Marjan van Erk, Teake Kooistra, Robert Kleemann, Chris T. Evelo · 2008 · Genes & Nutrition
81. The Zebrafish GenomeWiki: a crowdsourcing approach to connect the long tail for zebrafish gene annotation
    Meghna Singh, D. Bhartiya, Jayant Maini, Mamta Sharma, A. R. Singh, Subburaj Kadarkaraisamy, Rajiv Rana, Ankit Sabharwal, Srishti Nanda, A. Ramachandran et al. · 2014 · Database
82. Working with Ontologies
    Frank Krämer, Tim Beißbarth · 2016 · Methods in molecular biology
83. WikiGenomes: an open Web application for community consumption and curation of gene annotation data in Wikidata
    Tim Putman, Sebastien Lelong, Sebastian Burgstaller-Muehlbacher, Andra Waagmeester, Colin M. Diesh, Nathan Dunn, Monica C. Muñoz-Torres, Gregory S. Stupp, Andrew I. Su, Benjamin M. Good · 2017 · bioRxiv (Cold Spring Harbor Laboratory)
84. Overexpression of microRNAs miR-25-3p, miR-185-5p and miR-132-3p in Late Onset Fetal Growth Restriction, Validation of Results and Study of the Biochemical Pathways Involved
    Gabriela Loscalzo, Julia Scheel, José Santiago Ibáñez-Cabellos, Eva García-López, Shailendra K. Gupta, Jose Luis García‐Giménez, Salvador Mena, Alfredo Perales M, José Morales‐Roselló · 2021 · International Journal of Molecular Sciences
85. Pathway expression analysis
    Nathan Mankovich, Eric R. Kehoe, Amy Peterson, Michael J. L. Kirby · 2022 · Scientific Reports
86. Differential prioritization of therapies to subtypes of triple negative breast cancer using a systems medicine method
    Henri Wathieu, Naiem Tony Issa, Aileen I. Fernandez, Manisha Mohandoss, Deanna Marie Tiek, Jennifer L. Franke, Stephen W. Byers, Rebecca Baab Riggins, Sivanesan Dakshanamurthy · 2017 · Oncotarget
87. Network Rewiring in Cancer: Applications to Melanoma Cell Lines and the Cancer Genome Atlas Patients
    Kuan-Fu Ding, Darren Finlay, Hongwei Holly Yin, William P.D. Hendricks, Chris Sereduk, Jeffrey Kiefer, Aleksandar Sekulić, Patricia Mucci LoRusso, Kristiina Vuori, Jeffrey M. Trent et al. · 2018 · Frontiers in Genetics
88. Transcriptomic profiling in Cutaneous Leishmaniasis patients
    Nasrin Masoudzadeh, Amir Mizbani, Sima Rafati · 2020 · Expert Review of Proteomics
89. Inhibition of Renin Expression Is Regulated by an Epigenetic Switch From an Active to a Poised State
    Jason P. Smith, Robert L. Paxton, Silvia Medrano, Nathan C. Sheffield, Maria Luisa S. Sequeira-Lόpez, R. Ariel Gómez · 2024 · Hypertension
90. Fetuin B Is Related to Cytokine/Chemokine and Insulin Signaling in Adipose Tissue and Plasma in Humans
    Esther J Kemper, Gijs H. Goossens, Ellen E. Blaak, Michiel E. Adriaens, Ruth C. R. Meex · 2025 · The Journal of Clinical Endocrinology & Metabolism
91. Characterization of a suspension Vero cell line for viral vaccine production
    Léa Bourigault, Corinne Bresson, Christian Jean, Christophe Chevalard, Mathilde Kloutz, Damien Soulet, Fleurine Pelissier, Stéphanie Richard, Isabelle Bassard, Nicolas Sève et al. · 2025 · npj Vaccines
92. Expanding the utility of variant effect predictions with phenotype-specific models
    David F. Stein, Meltem Ece Kars, Baptiste Milisavljevic, Matthew E. Mort, Peter D. Stenson, Jean‐Laurent Casanova, D.N. Cooper, Bertrand Boisson, Peng Zhang, Avner Schlessinger et al. · 2025 · Nature Communications
93. Tumor treating fields affect mesothelioma cell proliferation by exerting histotype-dependent cell cycle checkpoint activations and transcriptional modulations
    Laura Mannarino, Federica Mirimao, Nicolò Panini, Lara Paracchini, Sergio Marchini, Luca Beltrame, Rosy Amodeo, Federica Grosso, Roberta Libener, Irene De Simone et al. · 2022 · Cell Death and Disease
94. Adriforant is a functional antagonist of histamine receptor 4 and attenuates itch and skin inflammation in mice
    Özge Uluçkan, Sandro Bruno, Yichen Wang, Nathalie Wack, Jenny Wilzopolski, Jean‐François Goetschy, Corinne Delucis-Bronn, Beatrice Urban, Dominique Fehlmann, Holger Stark et al. · 2023 · European Journal of Pharmacology
95. Logic-based modeling of inflammatory macrophage cross talk with glomerular endothelial cells in diabetic kidney disease
    Krutika Patidar, Ashlee N. Ford Versypt · 2025 · American Journal of Physiology-Renal Physiology
96. Bioinformatic interrogation of expression array data to identify nutritionally regulated genes potentially modulated by DNA methylation
    Jill A. McKay, Michiel E. Adriaens, Dianne Ford, Caroline Laura Relton, Chris T. Evelo, John Cummings Mathers · 2008 · Genes & Nutrition
97. PALLAS: Penalized mAximum LikeLihood and pArticle Swarms for Inference of Gene Regulatory Networks From Time Series Data
    Yukun Tan, Fernando Buarque de Lima Neto, Ulisses Braga-Neto · 2020 · IEEE Transactions on Computational Biology and Bioinformatics
98. PhenCards: a data resource linking human phenotype information to biomedical knowledge
    James M. Havrilla, Cong Liu, Xiangchen Dong, Chunhua Weng, Kai Wang · 2021 · Genome Medicine
99. Using BioPAX-Parser (BiP) to enrich lists of genes or proteins with pathway data
    Giuseppe Agapito, Mario Cannataro · 2021 · BMC Bioinformatics
100. Meeting report from the first meetings of the Computational Modeling in Biology Network (COMBINE)
     Nicolas Gambardella Le Novère, Michael Hucka, Nadia Anwar, Gary D. Bader, Emek Demir, Stuart Moodie, Anatoly Sorokin · 2011 · Standards in Genomic Sciences