WikiPathways: Pathway Editing for the People
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WikiPathways provides a collaborative platform for creating, updating, and sharing pathway diagrams and serves as an example of content curation by the biology community.
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WikiPathways is working on using BioPAX to import pathways from numerous sources.
“For instance, the ChiBE and VisANT pathway visualization tools read BioPAX format22 and the WikiPathways website53, a community wiki for pathways, is working on using BioPAX to help import pathways from numerous sources, including manually edited pathways from biologists.”
From The BioPAX community standard for pathway data sharing (2010) · cites this paper as [53]
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- Authors
- Pico, A. R., Kelder, T., van Iersel, M. P., Hanspers, K., Conklin, B. R., & Evelo, C.
- Affiliations
- Gladstone Institutes (US)
- University of California, San Francisco (US)
- Corresponding author
- Conklin, Bruce R
- Evelo, Chris
- Venue
- PLoS Biology
- Publisher
- Public Library of Science (PLoS)
- Published
- 2008-07-22
- Volume
- 6
- Issue
- 7
- Pages
- e184
- ISSN
- 1544-9173 (ISSN-L)
- 1545-7885
- PMC
- PMC2475545
- OpenAlex
- W2010502047
- Cited by
- 701
- References
- 12
- Citations by year
- 2026: 17 · 2025: 38 · 2024: 72 · 2023: 37 · 2022: 26 · 2021: 42 · 2020: 30 · 2019: 23 · 2018: 24 · 2017: 41 · 2016: 28 · 2015: 43 · 2014: 39 · 2013: 49 · 2012: 50
- FWCI
- 19.49
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- PLoS Biology (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Research Publications (Maastricht University) (publishedVersion, cc-by)
- RePEc: Research Papers in Economics (submittedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- eScholarship (California Digital Library) (submittedVersion)
- Research Publications (Maastricht University) (submittedVersion, other-oa)
- Funders
- National Institutes of Health
- National Human Genome Research Institute (HG003053, R01HG003053)
- National Institute of General Medical Sciences (R01GM080223, GM080223)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Bioinformatics and Genomic Networks
- Social Sciences › Communication › Wikis in Education and Collaboration
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Biomedical Text Mining and Ontologies
- Keywords
- WikiPathways, pathway diagrams, collaborative editing, content curation, biological pathway databases
- MeSH terms
- Database Management Systems, Signal Transduction, Databases, Factual, Systems Integration, Internet, Metabolic Networks and Pathways
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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