WikiPathways: Pathway Editing for the People

Pico, Alexander R, Kelder, Thomas, van Iersel, Martijn P, Hanspers, Kristina, Conklin, Bruce R, Evelo, Chris·2008·PLoS Biology
DOI 10.1371/journal.pbio.0060184

Cited by (732)

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  46. Additional file 1 of Robustness evaluations of pathway activity inference methods on gene expression data
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  47. Additional file 1 of Using published pathway figures in enrichment analysis and machine learning
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  67. Additional file 1 of Using BioPAX-Parser (BiP) to enrich lists of genes or proteins with pathway data
    Giuseppe Agapito, Mario Cannataro · 2021 · Figshare
  68. Additional file 7 of Robustness evaluations of pathway activity inference methods on gene expression data
    Tay Xin Hui, Kasim, Shahreen, Aziz, Izzatdin Abdul, MOHD FARHAN MD FUDZEE, Nazleeni Samiha Haron, Sutikno, Tole, rohayanti binti hassan, Mahdin, Hairulnizam, Sen, Seah Choon · 2024 · Figshare
  69. Additional file 15 of Robustness evaluations of pathway activity inference methods on gene expression data
    Tay Xin Hui, Kasim, Shahreen, Aziz, Izzatdin Abdul, MOHD FARHAN MD FUDZEE, Nazleeni Samiha Haron, Sutikno, Tole, rohayanti binti hassan, Mahdin, Hairulnizam, Sen, Seah Choon · 2024 · Figshare
  70. Additional file 3 of Sodium-glucose cotransporter 2 inhibitors induce anti-inflammatory and anti-ferroptotic shift in epicardial adipose tissue of subjects with severe heart failure
    Barbora Judita Kasperová, Mraz, Milos, Petr Svoboda, Daniel Hlaváček, Helena Kratochvílová, István Módos, Nikola Vrzáčková, Ivak, Peter, Petra Janovská, Tatyana Kobets et al. · 2024 · Figshare
  71. Additional file 2 of Robustness evaluations of pathway activity inference methods on gene expression data
    Tay Xin Hui, Kasim, Shahreen, Aziz, Izzatdin Abdul, MOHD FARHAN MD FUDZEE, Nazleeni Samiha Haron, Sutikno, Tole, rohayanti binti hassan, Mahdin, Hairulnizam, Sen, Seah Choon · 2024 · Figshare
  72. Additional file 16 of Robustness evaluations of pathway activity inference methods on gene expression data
    Tay Xin Hui, Kasim, Shahreen, Aziz, Izzatdin Abdul, MOHD FARHAN MD FUDZEE, Nazleeni Samiha Haron, Sutikno, Tole, rohayanti binti hassan, Mahdin, Hairulnizam, Sen, Seah Choon · 2024 · Figshare
  73. Additional file 2 of Sodium-glucose cotransporter 2 inhibitors induce anti-inflammatory and anti-ferroptotic shift in epicardial adipose tissue of subjects with severe heart failure
    Barbora Judita Kasperová, Mraz, Milos, Petr Svoboda, Daniel Hlaváček, Helena Kratochvílová, István Módos, Nikola Vrzáčková, Ivak, Peter, Petra Janovská, Tatyana Kobets et al. · 2024 · Figshare
  74. Additional file 19 of Robustness evaluations of pathway activity inference methods on gene expression data
    Tay Xin Hui, Kasim, Shahreen, Aziz, Izzatdin Abdul, MOHD FARHAN MD FUDZEE, Nazleeni Samiha Haron, Sutikno, Tole, rohayanti binti hassan, Mahdin, Hairulnizam, Sen, Seah Choon · 2024 · Figshare
  75. Additional file 1 of Identification of common microRNA between COPD and non-small cell lung cancer through pathway enrichment analysis
    Amirhossein Fathinavid, Ghobadi, Mohadeseh Zarei, Najafi, Ali, Ali Masoudi‐Nejad · 2021 · Figshare
  76. Additional file 5 of Robustness evaluations of pathway activity inference methods on gene expression data
    Tay Xin Hui, Kasim, Shahreen, Aziz, Izzatdin Abdul, MOHD FARHAN MD FUDZEE, Nazleeni Samiha Haron, Sutikno, Tole, rohayanti binti hassan, Mahdin, Hairulnizam, Sen, Seah Choon · 2024 · Figshare
  77. Additional file 20 of Robustness evaluations of pathway activity inference methods on gene expression data
    Tay Xin Hui, Kasim, Shahreen, Aziz, Izzatdin Abdul, MOHD FARHAN MD FUDZEE, Nazleeni Samiha Haron, Sutikno, Tole, rohayanti binti hassan, Mahdin, Hairulnizam, Sen, Seah Choon · 2024 · Figshare
  78. Additional file 3 of Robustness evaluations of pathway activity inference methods on gene expression data
    Tay Xin Hui, Kasim, Shahreen, Aziz, Izzatdin Abdul, MOHD FARHAN MD FUDZEE, Nazleeni Samiha Haron, Sutikno, Tole, rohayanti binti hassan, Mahdin, Hairulnizam, Sen, Seah Choon · 2024 · Figshare
  79. Additional file 1 of Transcriptomic changes in peripheral blood mononuclear cells with weight loss: systematic literature review and primary data synthesis
    Day, Kaitlin, Aimee L. Dordevic, Helen Truby, Melissa C. Southey, Susan L. Coort, Chiara Murgia · 2021 · Figshare
  80. Additional file 21 of Robustness evaluations of pathway activity inference methods on gene expression data
    Tay Xin Hui, Kasim, Shahreen, Aziz, Izzatdin Abdul, MOHD FARHAN MD FUDZEE, Nazleeni Samiha Haron, Sutikno, Tole, rohayanti binti hassan, Mahdin, Hairulnizam, Sen, Seah Choon · 2024 · Figshare
  81. Additional file 13 of Robustness evaluations of pathway activity inference methods on gene expression data
    Tay Xin Hui, Kasim, Shahreen, Aziz, Izzatdin Abdul, MOHD FARHAN MD FUDZEE, Nazleeni Samiha Haron, Sutikno, Tole, rohayanti binti hassan, Mahdin, Hairulnizam, Sen, Seah Choon · 2024 · Figshare
  82. Additional file 1 of PhenCards: a data resource linking human phenotype information to biomedical knowledge
    James M. Havrilla, Cong Liu, Xiangchen Dong, Weng, Chunhua, Wang, Kai · 2021 · Figshare
  83. Additional file 10 of Robustness evaluations of pathway activity inference methods on gene expression data
    Tay Xin Hui, Kasim, Shahreen, Aziz, Izzatdin Abdul, MOHD FARHAN MD FUDZEE, Nazleeni Samiha Haron, Sutikno, Tole, rohayanti binti hassan, Mahdin, Hairulnizam, Sen, Seah Choon · 2024 · Figshare
  84. Additional file 1 of Cellular and clinical impact of protein phosphatase enzyme epigenetic silencing in multiple cancer tissues
    Edward Wiltshire, Manuel Castro de Moura, David Piñeyro, Ricky S. Joshi · 2024 · Figshare
  85. Additional file 8 of Robustness evaluations of pathway activity inference methods on gene expression data
    Tay Xin Hui, Kasim, Shahreen, Aziz, Izzatdin Abdul, MOHD FARHAN MD FUDZEE, Nazleeni Samiha Haron, Sutikno, Tole, rohayanti binti hassan, Mahdin, Hairulnizam, Sen, Seah Choon · 2024 · Figshare
  86. Additional file 1 of Pathway information extracted from 25 years of pathway figures
    Kristina Hanspers, Anders Riutta, Martina Kutmon, Alexander R. Pico · 2020 · Figshare
  87. Additional file 1 of Metabolomic and transcriptomic profiling of adult mice and larval zebrafish leptin mutants reveal a common pattern of changes in metabolites and signaling pathways
    Ding, Yi, Mariëlle C. Haks, Gabriel Forn‐Cuní, He, Junling, Natalia Nowik, Harms, Amy C., Thomas Hankemeier, Muhamed N. H. Eeza, Matysik, Jörg, Alia, A. et al. · 2021 · Figshare
  88. Additional file 6 of Robustness evaluations of pathway activity inference methods on gene expression data
    Tay Xin Hui, Kasim, Shahreen, Aziz, Izzatdin Abdul, MOHD FARHAN MD FUDZEE, Nazleeni Samiha Haron, Sutikno, Tole, rohayanti binti hassan, Mahdin, Hairulnizam, Sen, Seah Choon · 2024 · Figshare
  89. Additional file 2 of Using published pathway figures in enrichment analysis and machine learning
    Shin, Min-Gyoung, Alexander R. Pico · 2024 · Figshare
  90. Additional file 9 of Robustness evaluations of pathway activity inference methods on gene expression data
    Tay Xin Hui, Kasim, Shahreen, Aziz, Izzatdin Abdul, MOHD FARHAN MD FUDZEE, Nazleeni Samiha Haron, Sutikno, Tole, rohayanti binti hassan, Mahdin, Hairulnizam, Sen, Seah Choon · 2024 · Figshare
  91. Additional file 12 of Robustness evaluations of pathway activity inference methods on gene expression data
    Tay Xin Hui, Kasim, Shahreen, Aziz, Izzatdin Abdul, MOHD FARHAN MD FUDZEE, Nazleeni Samiha Haron, Sutikno, Tole, rohayanti binti hassan, Mahdin, Hairulnizam, Sen, Seah Choon · 2024 · Figshare
  92. Additional file 14 of Robustness evaluations of pathway activity inference methods on gene expression data
    Tay Xin Hui, Kasim, Shahreen, Aziz, Izzatdin Abdul, MOHD FARHAN MD FUDZEE, Nazleeni Samiha Haron, Sutikno, Tole, rohayanti binti hassan, Mahdin, Hairulnizam, Sen, Seah Choon · 2024 · Figshare
  93. Additional file 3 of Using published pathway figures in enrichment analysis and machine learning
    Shin, Min-Gyoung, Alexander R. Pico · 2024 · Figshare
  94. Additional file 2 of Cellular and clinical impact of protein phosphatase enzyme epigenetic silencing in multiple cancer tissues
    Edward Wiltshire, Manuel Castro de Moura, David Piñeyro, Ricky S. Joshi · 2024 · Figshare
  95. Additional file 1 of Analysis and prediction of interactions between transmembrane and non-transmembrane proteins
    Lu, Chang, Jiuhong Jiang, Qiufen Chen, Liu, Huanhuan, Ju, Xingda, Wang, Han · 2024 · Figshare
  96. Additional file 5 of Transcriptomic changes in peripheral blood mononuclear cells with weight loss: systematic literature review and primary data synthesis
    Day, Kaitlin, Aimee L. Dordevic, Helen Truby, Melissa C. Southey, Susan L. Coort, Chiara Murgia · 2021 · Figshare
  97. Additional file 4 of Transcriptomic changes in peripheral blood mononuclear cells with weight loss: systematic literature review and primary data synthesis
    Kaitlin Day, Aimee L. Dordevic, Helen Truby, Melissa C. Southey, Susan L. Coort, Chiara Murgia · 2021 · Figshare
  98. Additional file 2 of Transcriptomic changes in peripheral blood mononuclear cells with weight loss: systematic literature review and primary data synthesis
    Day, Kaitlin, Aimee L. Dordevic, Helen Truby, Melissa C. Southey, Susan L. Coort, Chiara Murgia · 2021 · Figshare
  99. Additional file 4 of Robustness evaluations of pathway activity inference methods on gene expression data
    Tay Xin Hui, Kasim, Shahreen, Aziz, Izzatdin Abdul, MOHD FARHAN MD FUDZEE, Nazleeni Samiha Haron, Sutikno, Tole, rohayanti binti hassan, Mahdin, Hairulnizam, Sen, Seah Choon · 2024 · Figshare
  100. Additional file 18 of Robustness evaluations of pathway activity inference methods on gene expression data
    Tay Xin Hui, Kasim, Shahreen, Aziz, Izzatdin Abdul, MOHD FARHAN MD FUDZEE, Nazleeni Samiha Haron, Sutikno, Tole, rohayanti binti hassan, Mahdin, Hairulnizam, Sen, Seah Choon · 2024 · Figshare