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Comparative Genomics Uncovers Unique Gene Turnover and Evolutionary Rates in a Gene Family Involved in the Detection of Insect Cuticular Pheromones

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Geographic Distribution of HCV-GT3 Subtypes and Naturally Occurring Resistance Associated Substitutions

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Evidence of significant natural selection in the evolution of SARS-CoV-2 in bats, not humans

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Invasive Bullfrogs Maintain MHC Polymorphism Including Alleles Associated with Chytrid Fungal Infection

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Simplexviruses Successfully Adapt to Their Host by Fine-Tuning Immune Responses

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A phylogenetic study of dengue virus in urban Vietnam shows long-term persistence of endemic strains

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Cold-Driven Hemoglobin Evolution in Antarctic Notothenioid Fishes Prior to Hemoglobin Gene Loss in White-Blooded Icefishes

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Adaptive evolution of mitochondrial genomes in Triplophysa cavefishes

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Evolution of Virus-like Features and Intrinsically Disordered Regions in Retrotransposon-derived Mammalian Genes

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Episodic Diversifying Selection Shaped the Genomes of Gibbon Ape Leukemia Virus and Related Gammaretroviruses

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Positive selection at sites of chemosensory genes is associated with the recent divergence and local ecological adaptation in cactophilic Drosophila

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Molecular evolution of the hemagglutinin-neuraminidase (HN) gene in human respirovirus 3

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Arthropod Ectoparasites Have Potential to Bind SARS-CoV-2 via ACE

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Molecular-genetic characterization of human parvovirus B19 prevalent in Kerala State, India

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Prevalence, Genetics and Evolutionary Properties of Eurasian Avian-like H1N1 Swine Influenza Viruses in Liaoning

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Both Epistasis and Diversifying Selection Drive the Structural Evolution of the Ebola Virus Glycoprotein Mucin-Like Domain

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SpermBindinDivergence under Sexual Selection and Concerted Evolution in Sea Stars

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Positively Selected Sites at HCMV gB Furin Processing Region and Their Effects in Cleavage Efficiency

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Dynamic Co-evolution and Interaction of Avian Leukosis Virus Genetic Variants and Host Immune Responses

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Diversity and evolution of MHC class II DRB gene in the Eurasian badger genus Meles (Mammalia: Mustelidae)

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On the Evolution and Function of Plasmodium vivax Reticulocyte Binding Surface Antigen (pvrbsa)

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Expansion of Imaginal Disc Growth Factor Gene Family in Diptera Reflects the Evolution of Novel Functions

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Mitogenomics of the endemic Ethiopian rats: looking for footprints of adaptive evolution in sky islands

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High genetic diversity in the endangered and narrowly distributed amphibian speciesLeptobrachium leishanense

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Evidence for adaptive evolution in the receptor-binding domain of seasonal coronaviruses OC43 and 229EPreprint

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Asymmetric evolution of protein domains in the leucine-rich repeat receptor-like kinase (LRR-RLK) family of plant developmental coordinatorsPreprint

Man, J., Harrington, T., Lally, K., & Bartlett, M. E. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.03.13.532436 · Cited by 13

Positive selection underlies the species‐specific binding of Plasmodium falciparum RH 5 to human basigin

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Phylogenomics and gene selection in Aspergillus welwitschiae: Possible implications in the pathogenicity in Agave sisalana

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Both selection and drift drive the spatial pattern of adaptive genetic variation in a wild mammal

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Single-cell transcriptomics reveals the brain evolution of web-building spiders

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High-altitude adaptation is accompanied by strong signatures of purifying selection in the mitochondrial genomes of three Andean waterfowl

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The Effect of Global Spread, Epidemiology, and Control Strategies on the Evolution of the GI-19 Lineage of Infectious Bronchitis Virus

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Genomic signatures of exceptional longevity and negligible aging in the long-lived red sea urchin

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Epidemiologic Investigation and Genetic Variation Analysis of PRRSV, PCV2, and PCV3 in Guangdong Province, China from 2020 to 2022

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Distribution of Marburg virus in Africa: An evolutionary approach

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Low genetic variation in the MHC class II DRB gene and MHC-linked microsatellites in endangered island populations of the leopard cat (Prionailurus bengalensis) in Japan

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Population mitogenomics provides insights into evolutionary history, source of invasions and diversifying selection in the House Crow (Corvus splendens)

Krzemińska, U., Morales, H. E., Greening, C., Nyári, Á. S., Wilson, R., Song, B. K., Austin, C. M., Sunnucks, P., Pavlova, A., & Rahman, S. (2017) · Heredity · doi:10.1038/s41437-017-0020-7 · Cited by 12

A Homeostasis Hypothesis of Avian Influenza Resistance in Chickens

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Molecular Evolution of Classic Human Astrovirus, as Revealed by the Analysis of the Capsid Protein Gene

Zhou, N., Zhou, L., & Wang, B. (2019) · Viruses · doi:10.3390/v11080707 · Cited by 12

Geography is essential for reproductive isolation between florally diversified morning glory species from Amazon canga savannahs

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In-Silico Evaluation of a New Gene From Wheat Reveals the Divergent Evolution of the CAP160 Homologous Genes Into Monocots

Zayed, M., & Badawi, M. A. (2019) · Journal of Molecular Evolution · doi:10.1007/s00239-019-09920-5 · Cited by 13

Diverse conserved domains and a positively selected site in the sugarcane streak mosaic virus P1 protein are essential for RNA silencing suppression and protein stability

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Positive selection and convergent evolution shape molecular phenotypic traits of innate immunity receptors in tits (Paridae)

Těšičký, M., Velová, H., Novotný, M., Kreisinger, J., Beneš, V., & Vinkler, M. (2020) · Molecular Ecology · doi:10.1111/mec.15547 · Cited by 12

Raspberry bushy dwarf virus in Slovenia - geographic distribution, genetic diversity and population structure

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Genetic origins and diversity of bushpigs from Madagascar (Potamochoerus larvatus, family Suidae)

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Evolutionary Dynamics of Mexican Lineage H5N2 Avian Influenza Viruses

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The Deadly Toxin Arsenal of the Tree-Dwelling Australian Funnel-Web Spiders

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Secretory Gene Recruitments in Vampire Bat Salivary Adaptation and Potential Convergences With Sanguivorous Leeches

Phillips, C. D., & Baker, R. J. (2015) · Frontiers in Ecology and Evolution · doi:10.3389/fevo.2015.00122 · Cited by 12

Diverse selective regimes shape genetic diversity atADARgenes and at their coding targets

Forni, D., Mozzi, A., Pontremoli, C., Vertemara, J., Pozzoli, U., Biasin, M., Bresolin, N., Clerici, M., Cagliani, R., & Sironi, M. (2015) · RNA Biology · doi:10.1080/15476286.2015.1017215 · Cited by 12

Social pairing of Seychelles warblers under reduced constraints: MHC, neutral heterozygosity, and age

Wright, D. J., Brouwer, L., Mannarelli, M., Burke, T. A., Komdeur, J., & Richardson, D. S. (2015) · Behavioral Ecology · doi:10.1093/beheco/arv150 · Cited by 12

Adaptive patterns in the p53 protein sequence of the hypoxia- and cancer-tolerant blind mole rat Spalax

Domankevich, V., Opatowsky, Y., Malik, A., Korol, A. B., Frenkel, Z., Manov, I., Avivi, A., & Shams, I. (2016) · BMC Evolutionary Biology · doi:10.1186/s12862-016-0743-8 · Cited by 11

Evidence for both Intermittent and Persistent Compartmentalization of HIV-1 in the Female Genital Tract

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MHC structuring and divergent allele advantage in a urodele amphibian: a hierarchical multi-scale approach

Talarico, L., Babik, W., Marta, S., Pietrocini, V., & Mattoccia, M. (2019) · Heredity · doi:10.1038/s41437-019-0221-3 · Cited by 11

The strength of selection is consistent across both domains of the MHC class I peptide-binding groove in birds

Minias, P., He, K., & Dunn, P. O. (2021) · BMC Ecology and Evolution · doi:10.1186/s12862-021-01812-x · Cited by 12

Capsid coding region diversity of re-emerging lineage C foot-and-mouth disease virus serotype Asia1 from India

Subramaniam, S., Mohapatra, J. K., Das, B., Sharma, G. K., BISWAL, J. K., Mahajan, S., Misri, J., Dash, B. B., & Pattnaik, B. (2015) · Archives of Virology · doi:10.1007/s00705-015-2459-2 · Cited by 12

Evolutionary history of the SARS-CoV-2 Gamma variant of concern (P.1): a perfect storm

Yépez, Y., Marcano-Ruiz, M., Bezerra, R. S., Fam, B., Ximenez, J. P., Silva, W. A., Jr., & Bortolini, M. C. (2022) · Genetics and Molecular Biology · doi:10.1590/1678-4685-gmb-2021-0309 · Cited by 15

Evolutionary Dynamics of Foot and Mouth Disease Virus Serotype A and Its Endemic Sub-Lineage A/ASIA/Iran-05/SIS-13 in Pakistan

Naqvi, S. S., Bostan, N., Fukai, K., Ali, Q., Morioka, K., Nishi, T., Abubakar, M., Ahmed, Z., Sattar, S., Javed, S., et al. (2022) · Viruses · doi:10.3390/v14081634 · Cited by 12

Evolution for extreme living: variation in mitochondrial cytochrome c oxidase genes correlated with elevation in pikas (genus Ochotona)

Solari, K. A., & Hadly, E. A. (2018) · Integrative Zoology · doi:10.1111/1749-4877.12332 · Cited by 12

Impact of Natural or Synthetic Singletons in the Capsid of Human Bocavirus 1 on Particle Infectivity and Immunoreactivity

Fakhiri, J., Linse, K.-P., Mietzsch, M., Xu, M., Schneider, M. A., Meister, M. A., Schildgen, O., Schnitzler, P., Söderlund‐Venermo, M., Agbandje‐McKenna, M., et al. (2020) · Journal of Virology · doi:10.1128/jvi.00170-20 · Cited by 12

Deadly Innovations: Unraveling the Molecular Evolution of Animal Venoms

Sunagar, K., Casewell, N. R., Varma, S., Kolla, R., Antunes, A., & Moran, Y. (2014) · Springer eBooks · doi:10.1007/978-94-007-6649-5_27-1 · Cited by 12

From transmission to adaptive evolution: genomic surveillance of Getah virus

Yuan, Y., Hao, Y., Peng, C., Zhang, D., Ma, W., Xiao, P., & Li, N. (2025) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2025.1513392 · Cited by 11

Comparative chloroplast genomics of Erigeron (Asteroideae, Asteraceae)

Abdullah, A., Rahmatulla, A., Chen, C., Yan, R., Naz, I., Heidari, P., Ahmed, I., Vallada, A., & Tian, X. (2025) · BMC Plant Biology · doi:10.1186/s12870-025-07484-9 · Cited by 11

Evolutionary history and global spatiotemporal pattern of alfalfa mosaic virus

Gao, Y., Fan, G., Cheng, S., Zhang, W., & Bai, Y. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2022.1051834 · Cited by 11

Equine herpesvirus 4 infected domestic horses associated with Sintashta spoke-wheeled chariots around 4,000 years ago

Lebrasseur, O., More, K. D., & Orlando, L. (2024) · Virus Evolution · doi:10.1093/ve/vead087 · Cited by 11

Evolutionary Analysis of Cnidaria Small Cysteine-Rich Proteins (SCRiPs), an Enigmatic Neurotoxin Family from Stony Corals and Sea Anemones (Anthozoa: Hexacorallia)

Barroso, R. A., Ramos, L., Moreno, H., & Antunes, A. (2024) · Toxins · doi:10.3390/toxins16020075 · Cited by 12

Ancient reindeer mitogenomes reveal island-hopping colonisation of the Arctic archipelagos

Hold, K., Lord, E., Brealey, J. C., Moullec, M. L., Bieker, V. C., Ellegaard, M. R., Rasmussen, J. A., Kellner, F. L., Guschanski, K., Yannic, G., et al. (2024) · Scientific Reports · doi:10.1038/s41598-024-54296-2 · Cited by 13

Evidence for Selection on Mitochondrial OXPHOS Genes in the Mediterranean Killifish Aphanius fasciatus Valenciennes, 1821

Pappalardo, A. M., Calogero, G. S., Šanda, R., Giuga, M., & Ferrito, V. (2024) · Biology · doi:10.3390/biology13040212 · Cited by 11

Phylogenetics of Lepidonotopodini (Macellicephalinae, Polynoidae, Annelida) and Comparative Mitogenomics of Shallow-Water vs. Deep-Sea Scaleworms (Aphroditiformia)

Hiley, A. S., Koch, N. M., & Rouse, G. W. (2024) · Biology · doi:10.3390/biology13120979 · Cited by 11

Decoding the blueprint of receptor binding by filoviruses through large-scale binding assays and machine learning

Lasso, G., Grodus, M., Valencia, E., DeJesus, V. A., Liang, E., Delwel, I., Bortz, R. H., Lupyan, D., Ehrlich, H. Y., Castellanos, A. A., et al. (2025) · Cell Host & Microbe · doi:10.1016/j.chom.2024.12.016 · Cited by 11

Environmental microbiomes drive chemotactile sensation in octopus

Sepela, R. J., Jiang, H., Shin, Y., Hautala, T. L., Clardy, J., Hibbs, R. E., & Bellono, N. W. (2025) · Cell · doi:10.1016/j.cell.2025.05.033 · Cited by 11

Detecting individual sites subject to episodic diversifying selection. PLoS Genet 8(7): e1002764

Murrell, B., Wertheim, J. O., Moola, S., Weighill, T., Scheffler, K., & Pond, S. L. K. (2012)

Additional file 6 of Identification of positive selection in genes is greatly improved by using experimentally informed site-specific models

Bloom, J. D. (2017) · Figshare · doi:10.6084/m9.figshare.4559848

Gene-Wide Identification of Episodic Selection

Murrell, B., Weaver, S., Smith, M. D., Wertheim, J. O., Murrell, S., Aylward, A., Eren, K., Pollner, T., Martin, D. P., Smith, D. M., et al. (2015) · Molecular Biology and Evolution · doi:10.1093/molbev/msv035 · Cited by 676

BABAPPAΩ: Diagnosing the Identifiability of Episodic Selection under Branch–Site Evolution Using Likelihood-Free Neural InferencePreprint

Sinha, K. (2026) · doi:10.32942/x2r073

Identification of positive selection in genes is greatly improved by using experimentally informed site-specific models

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