The DOI matches its Crossref record; 2 of the 2 references it cites were found in a registry or an index.
Elucidation of the RNA Recognition Code for Pentatricopeptide Repeat Proteins Involved in Organelle RNA Editing in Plants
Open accessAbstract
Pentatricopeptide repeat (PPR) proteins are eukaryotic RNA-binding proteins that are commonly found in plants. Organelle transcript processing and stability are mediated by PPR proteins in a gene-specific manner through recognition by tandem arrays of degenerate 35-amino-acid repeating units, the PPR motifs. However, the sequence-specific RNA recognition mechanism of the PPR protein remains largely unknown. Here, we show the principle underlying RNA recognition for PPR proteins involved in RNA editing. The distance between the PPR-RNA alignment and the editable C was shown to be conserved. Amino acid variation at 3 particular positions within the motif determined recognition of a specific RNA in a programmable manner, with a 1-motif to 1-nucleotide correspondence, with no gap sequence. Data from the decoded nucleotide frequencies for these 3 amino acids were used to assign accurate interacting sites to several PPR proteins for RNA editing and to predict the target site for an uncharacterized PPR protein.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
TAL effectors: customizable proteins for DNA targeting
Bogdanove, A. J., & Voytas, D. F. (2011) · Science · doi:10.1126/science.1204094 · Cited by 984
Lipinski, K. A., Puchta, O., Surendranath, V., Kudla, M., & Golik, P. (2011) · Molecular Biology and Evolution · doi:10.1093/molbev/msr120 · Cited by 62
Cited by
An artificial PPR scaffold for programmable RNA recognition
Coquille, S., Filipovska, A., Chia, T., Rajappa, L., Lingford, J. P., Razif, M. F. M., Thore, S., & Rackham, O. (2014) · Nature Communications · doi:10.1038/ncomms6729 · Cited by 120
Hommelsheim, C. M., Frantzeskakis, L., Huang, M., & Ülker, B. (2014) · Scientific Reports · doi:10.1038/srep05052 · Cited by 121
Wang, Y., Yan, J., Zhang, Q., Ma, X., Zhang, J., Su, M., Wang, X., & Huang, Y. (2017) · Nucleic Acids Research · doi:10.1093/nar/gkx127 · Cited by 34
Huynh, S. D., Melonek, J., Colas des Francs‐Small, C., Bond, C. S., & Small, I. (2023) · New Phytologist · doi:10.1111/nph.19166 · Cited by 17
Nguyen, T.-T., Best, C., Shevtsov, S., Zmudjak, M., Quadrado, M., Mizrahi, R., Zer, H., Mireau, H., & Ostersetzer-Biran, O. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms23052670 · Cited by 11
Metadata
- Authors
- Yagi, Y., Hayashi, S., Kobayashi, K., Hirayama, T., & Nakamura, T.
- Venue
- PLoS ONE
- Publisher
- Public Library of Science (PLoS)
- Published
- 2013-03-05
- Volume
- 8
- Issue
- 3
- Pages
- e57286
- ISSN
- 1932-6203 (ISSN-L)
- OpenAlex
- W2042792861
- Cited by
- 293
- References
- 2
- FWCI
- 13.58
- Type
- journal article
- Language
- en
- Open access
- gold
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
How to cite
Cite CoChat for the checks on this page, and the paper for its own findings.
- This page
- CoChat. (2026). Citation check: Elucidation of the RNA Recognition Code for Pentatricopeptide Repeat Proteins Involved in Organelle RNA Editing in Plants. https://app.cochat.ai/papers/10.1371/journal.pone.0057286
- The paper
- Yagi, Y., Hayashi, S., Kobayashi, K., Hirayama, T., & Nakamura, T. (2013). Elucidation of the RNA Recognition Code for Pentatricopeptide Repeat Proteins Involved in Organelle RNA Editing in Plants. PLoS ONE. https://doi.org/10.1371/journal.pone.0057286
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
