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Exploration of Human Salivary Microbiomes—Insights into the Novel Characteristics of Microbial Community Structure in Caries and Caries-Free Subjects
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“However, earlier studies using similar collection protocols and including information on plaque status or dental health have found correlations between microbial composition of saliva, the amount of plaque and diseases such as periodontitis, or caries [5, 9, 35, 36].”
From Citizen science charts two major “stomatotypes” in the oral microbiome of adolescents and reveals links with habits and drinking water composition (2018) · cites this paper as [36]
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Dewhirst, F. E., Chen, T., Izard, J., Paster, B. J., Tanner, A. C. R., Yu, W.-H., Lakshmanan, A., & Wade, W. G. (2010) · Journal of Bacteriology · doi:10.1128/jb.00542-10 · Cited by 3,352
The keystone-pathogen hypothesis
Hajishengallis, G., Darveau, R. P., & Curtis, M. A. (2012) · Nature Reviews Microbiology · doi:10.1038/nrmicro2873 · Cited by 1,790
Bacteria of Dental Caries in Primary and Permanent Teeth in Children and Young Adults
Aas, J. A., Griffen, A. L., Dardis, S. R., Lee, A. M., Olsen, I., Dewhirst, F. E., Leys, E. J., & Paster, B. J. (2008) · Journal of Clinical Microbiology · doi:10.1128/jcm.01410-07 · Cited by 952 · cited 2×
“There has been no complete consensus obtained from any two papers concerning the microbiomes in health and caries [6, 7, 47, 49, 54, 55, 57], consistent with the “Ecological Plaque Hypothesis” that suggested caries as a consequence of imbalances in the resident microflora [58].”
BackgroundOral microbiome profiles: 16S rRNA pyrosequencing and microarray assay comparison
Ahn, J., Yang, L., Paster, B. J., Ganly, I., Morris, L., Pei, Z., & Hayes, R. B. (2011) · PLoS ONE · doi:10.1371/journal.pone.0022788 · Cited by 183
The influence of oral Veillonella species on biofilms formed by Streptococcus species
Mashima, I., & Nakazawa, F. (2014) · Anaerobe · doi:10.1016/j.anaerobe.2014.05.003 · Cited by 125
Flagged first, then by citations
Research works printed but not linked: 54
- E Kidd, 2011, The implications of the new paradigm of dental caries, J Dent, 39, S3, 10.1016/j.jdent.2011.11.004 · DOI
- Y Liu, 2009, An Epidemiologic Study on the Correlation Between Oral Helicobacter pylori and Gastric H-pylori, Curr Microbiol, 58, 449, 10.1007/s00284-008-9341-3 · DOI
- KH Yip, 2012, Implications of oral biofilms in medically at risk persons, J Biomed Res, 26, 1, 10.1016/S1674-8301(12)60001-3 · DOI
- M Fontana, 2010, Defining dental caries for 2010 and beyond, Dent Clin North Am, 54, 423, 10.1016/j.cden.2010.03.007 · DOI
- L Chen, 2015, Extensive description and comparison of human supra-gingival microbiome in root caries and health, PLoS One, 10, e0117064, 10.1371/journal.pone.0117064 · DOI
- F Yang, 2012, Saliva microbiomes distinguish caries-active from healthy human populations, ISME J, 6, 1, 10.1038/ismej.2011.71 · DOI
- W Crielaard, 2011, Exploring the oral microbiota of children at various developmental stages of their dentition in the relation to their oral health, Bmc Med Genomics, 4, 10.1186/1755-8794-4-22 · DOI
- W Jiang, 2013, Pyrosequencing analysis of oral microbiota in children with severe early childhood dental caries, Curr Microbiol, 67, 537, 10.1007/s00284-013-0393-7 · DOI
- H Xu, 2014, Plaque Bacterial Microbiome Diversity in Children Younger than 30 Months with or without Caries Prior to Eruption of Second Primary Molars, Plos One, 9
- JZ He, 2015, The oral microbiome diversity and its relation to human diseases, Folia Microbiol, 60, 69, 10.1007/s12223-014-0342-2 · DOI · Paper page
- WK Seow, 2012, Environmental, maternal, and child factors which contribute to early childhood caries: a unifying conceptual model, Int J Paediatr Dent, 22, 157, 10.1111/j.1365-263X.2011.01186.x · DOI
- X Wang, 2012, Genetic and Environmental Factors Associated with Dental Caries in Children: The Iowa Fluoride Study, Caries Res, 46, 177, 10.1159/000337282 · DOI
- EM Bik, 2010, Bacterial diversity in the oral cavity of 10 healthy individuals, ISME J, 4, 962, 10.1038/ismej.2010.30 · DOI · Paper page
- ZT Yu, 2004, Improved extraction of PCR-quality community DNA from digesta and fecal samples, Biotechniques, 36, 808, 10.2144/04365ST04 · DOI
- JG Caporaso, 2010, QIIME allows analysis of high-throughput community sequencing data, Nat Methods, 7, 335, 10.1038/nmeth.f.303 · DOI · Paper page
- RC Edgar, 2011, UCHIME improves sensitivity and speed of chimera detection, Bioinformatics, 27, 2194, 10.1093/bioinformatics/btr381 · DOI · Paper page
- JR Cole, 2005, The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis, Nucleic Acids Res, 33, D294, 10.1093/nar/gki038 · DOI
- A Chao, 1992, Estimating Population-Size for Capture Recapture Data When Capture Probabilities Vary by Time and Individual Animal, Biometrics, 48, 201, 10.2307/2532750 · DOI
- A Chao, 2003, Nonparametric estimation of Shannon's index of diversity when there are unseen species in sample, Environ Ecol Stat, 10, 429, 10.1023/A:1026096204727 · DOI
- IJ Good, 1953, The Population Frequencies of Species and the Estimation of Population Parameters, Biometrika, 40, 237, 10.1093/biomet/40.3-4.237 · DOI
- KR Clarke, 1993, Nonparametric Multivariate Analyses of Changes in Community Structure, Aust J Ecol, 18, 117, 10.1111/j.1442-9993.1993.tb00438.x · DOI
- McCune, 2002, Analysis of ecological communities, Mjm Software Design Gleneden Beach, 289, 448
- PW Mielke, 2010, Permutation methods. A distance function approach, Sankhya, 350
- L Stone, 1990, The Checkerboard Score and Species Distributions, Oecologia, 85, 74, 10.1007/BF00317345 · DOI
- Wickham H, Chang W. Package ggplot2. 2015. · DOI
- D Blankenberg, 2010, Galaxy: a web-based genome analysis tool for experimentalists, Curr Protoc Mol Biol, 10.1002/0471142727.mb1910s89 · DOI
- B Giardine, 2005, Galaxy: A platform for interactive large-scale genome analysis, Genome Res, 15, 1451, 10.1101/gr.4086505 · DOI
- J Goecks, 2010, Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences, Genome Biol, 11, 10.1186/gb-2010-11-8-r86 · DOI
- H Xu, 2014, Plaque bacterial microbiome diversity in children younger than 30 months with or without caries prior to eruption of second primary molars, PLoS One, 9, e89269, 10.1371/journal.pone.0089269 · DOI
- D Belstrom, 2014, Altered Bacterial Profiles in Saliva from Adults with Caries Lesions: A Case-Cohort Study, Caries Res, 48, 368, 10.1159/000357502 · DOI
- W Jiang, 2014, Pyrosequencing Analysis of Oral Microbiota Shifting in Various Caries States in Childhood, Microb Ecol, 67, 962, 10.1007/s00248-014-0372-y · DOI
- N Kianoush, 2014, Bacterial profile of dentine caries and the impact of pH on bacterial population diversity, PLoS One, 9, e92940, 10.1371/journal.pone.0092940 · DOI
- M Costalonga, 2014, The oral microbiome and the immunobiology of periodontal disease and caries, Immunol Lett, 162, 22, 10.1016/j.imlet.2014.08.017 · DOI · Paper page
- T Thurnheer, 2015, Microbial dynamics during conversion from supragingival to subgingival biofilms in an in vitro model, Mol Oral Microbiol
- WV Giannobile, 2011, Translational and clinical applications of salivary diagnostics, Adv Dent Res, 23, 375, 10.1177/0022034511420434 · DOI
- N Segata, 2012, Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples, Genome Biol, 13, R42, 10.1186/gb-2012-13-6-r42 · DOI · Paper page
- A Simon-Soro, 2015, Solving the etiology of dental caries, Trends Microbiol, 23, 76, 10.1016/j.tim.2014.10.010 · DOI
- PR Marri, 2013, Asthma-associated differences in microbial composition of induced sputum, J Allergy Clin Immunol, 131, 346, 10.1016/j.jaci.2012.11.013 · DOI
- G Xie, 2010, Community and gene composition of a human dental plaque microbiota obtained by metagenomic sequencing, Mol Oral Microbiol, 25, 391, 10.1111/j.2041-1014.2010.00587.x · DOI
- TG Otten, 2015, Health Effects of Toxic Cyanobacteria in U.S. Drinking and Recreational Waters: Our Current Understanding and Proposed Direction, Curr Environ Health Rep, 2, 75, 10.1007/s40572-014-0041-9 · DOI
- A Benitez-Paez, 2013, Detection of transient bacteraemia following dental extractions by 16S rDNA pyrosequencing: a pilot study, PLoS One, 8, e57782, 10.1371/journal.pone.0057782 · DOI
- A Simon-Soro, 2013, A tissue-dependent hypothesis of dental caries, Caries Res, 47, 591, 10.1159/000351663 · DOI
- EA Delwiche, 1985, The veillonellae: gram-negative cocci with a unique physiology, Annu Rev Microbiol, 39, 175, 10.1146/annurev.mi.39.100185.001135 · DOI
- SN Peterson, 2013, The dental plaque microbiome in health and disease, PLoS One, 8, e58487, 10.1371/journal.pone.0058487 · DOI
- N Arif, 2008, Diversity of Veillonella spp. from sound and carious sites in children, J Dent Res, 87, 278, 10.1177/154405910808700308 · DOI
- SN Jagathrakshakan, 2015, 16S rRNA gene-based metagenomic analysis identifies a novel bacterial co-prevalence pattern in dental caries, Eur J Dent, 9, 127, 10.4103/1305-7456.149661 · DOI
- M Lakhtin, 2010, Probiotic lactobacillus and bifidobacterial lectins against Candida albicans and Staphylococcus aureus clinical strains: new class of the pathogen biofilm destructors. Probiotics &, Antimicrobial Proteins, 2, 186, 10.1007/s12602-010-9046-3 · DOI
- P Belda-Ferre, 2012, The oral metagenome in health and disease, Isme Journal, 6, 46, 10.1038/ismej.2011.85 · DOI
- ACR Tanner, 2011, Microbiota of Severe Early Childhood Caries before and after Therapy, Journal of Dental Research, 90, 1298, 10.1177/0022034511421201 · DOI
- C Ma, 2015, Comparison of oral microbial profiles between children with severe early childhood caries and caries-free children using the human oral microbe identification microarray, PLoS One, 10, e0122075, 10.1371/journal.pone.0122075 · DOI
- PD Marsh, 1994, Microbial ecology of dental plaque and its significance in health and disease, Adv Dent Res, 8, 263, 10.1177/08959374940080022001 · DOI · Paper page
- CA Palmer, 2010, Diet and caries-associated bacteria in severe early childhood caries, J Dent Res, 89, 1224, 10.1177/0022034510376543 · DOI
- LD Alcaraz, 2012, Identifying a healthy oral microbiome through metagenomics, Clin Microbiol Infect, 18, 54, 10.1111/j.1469-0691.2012.03857.x · DOI
- S Doungudomdacha, 2001, Effect of non-surgical periodontal treatment on clinical parameters and the numbers of Porphyromonas gingivalis, Prevotella intermedia and Actinobacillus actinomycetemcomitans at adult periodontitis sites, J Clin Periodontol, 28, 437, 10.1034/j.1600-051x.2001.028005437.x · DOI
Cited by
Sorted by citations
Oral Biofilms: Pathogens, Matrix, and Polymicrobial Interactions in Microenvironments
Bowen, W. H., Burne, R. A., Wu, H., & Koo, H. (2018) · Trends in Microbiology · doi:10.1016/j.tim.2017.09.008 · Cited by 1,059
Role of Oral Microbiome Signatures in Diagnosis and Prognosis of Oral Cancer
Chattopadhyay, I., Verma, M., & Panda, M. (2019) · Technology in Cancer Research & Treatment · doi:10.1177/1533033819867354 · Cited by 407
“Veillonella has cariogenic potential and allows acidogenic bacteria such as Streptococcus species to grow and continue to produce additional acid.(40)”
BackgroundWillis, J. R., González-Torres, P., Pittis, A. A., Bejarano, L. A., Cozzuto, L., Andreu-Somavilla, N., Alloza-Trabado, M., Valentín, A., Ksiezopolska, E., Company, C., et al. (2018) · Microbiome · doi:10.1186/s40168-018-0592-3 · Cited by 158
Metadata
- Authors
- Zhou, J., Jiang, N., Wang, S., Hu, X., Jiao, K., He, X., Li, Z., & Wang, J.
- Venue
- PLOS ONE
- Publisher
- Public Library of Science (PLoS)
- Published
- 2016-01-19
- Volume
- 11
- Issue
- 1
- Pages
- e0147039
- ISSN
- 1932-6203
- PMC
- PMC4718657
- Cited by
- 41
- References
- 5
- Language
- en
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