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IRF-3, IRF-5, and IRF-7 Coordinately Regulate the Type I IFN Response in Myeloid Dendritic Cells Downstream of MAVS Signaling
Open accessAbstract
Although the transcription factors IRF-3 and IRF-7 are considered master regulators of type I interferon (IFN) induction and IFN stimulated gene (ISG) expression, Irf3(-/-)×Irf7(-/-) double knockout (DKO) myeloid dendritic cells (mDC) produce relatively normal levels of IFN-β after viral infection. We generated Irf3(-/-)×Irf5(-/-)×Irf7(-/-) triple knockout (TKO) mice to test whether IRF-5 was the source of the residual induction of IFN-β and ISGs in mDCs. In pathogenesis studies with two unrelated positive-sense RNA viruses (West Nile virus (WNV) and murine norovirus), TKO mice succumbed at rates greater than DKO mice and equal to or approaching those of mice lacking the type I IFN receptor (Ifnar(-/-)). In ex vivo studies, after WNV infection or exposure to Toll-like receptor agonists, TKO mDCs failed to produce IFN-β or express ISGs. In contrast, this response was sustained in TKO macrophages following WNV infection. To define IRF-regulated gene signatures, we performed microarray analysis on WNV-infected mDC from wild type (WT), DKO, TKO, or Ifnar(-/-) mice, as well as from mice lacking the RIG-I like receptor adaptor protein MAVS. Whereas the gene induction pattern in DKO mDC was similar to WT cells, remarkably, almost no ISG induction was detected in TKO or Mavs(-/-) mDC. The relative equivalence of TKO and Mavs(-/-) responses suggested that MAVS dominantly regulates ISG induction in mDC. Moreover, we showed that MAVS-dependent induction of ISGs can occur through an IRF-5-dependent yet IRF-3 and IRF-7-independent pathway. Our results establish IRF-3, -5, and -7 as the key transcription factors responsible for mediating the type I IFN and ISG response in mDC during WNV infection and suggest a novel signaling link between MAVS and IRF-5.
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“Enhanced IFN-regulatory factor activity might also explain the observed increase in CXCL9-11 and CXCL13 (Kanda and Watanabe, 2007; Lazear et al., 2013; Muthalagu et al., 2020).”
From SHP2 inhibition diminishes KRASG12C cycling and promotes tumor microenvironment remodeling (2021) · cites this paper as Lazear et al., 2013
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“…cells with PolyIC stimulus produce a little IFN β , though the weaker IRF-inducing stimulus LPS shows no IFN β induction even in this double ko (26–29). κ In contrast, NF Bko cells, which lack subunits RelA and cRel, show severely diminished IFN β expression when LPS is the stimulus, while they…”
InfluentialThe Paradoxical Roles of Cell Death Pathways in Immune Cells
McComb, S. (2013) · uO Research (University of Ottawa) · doi:10.20381/ruor-3097
What to Expect When You’re Expecting Zika
Lazear, H. M. (2017) · Cell Host & Microbe · doi:10.1016/j.chom.2017.02.015
“…ª 2017 Elsevier Inc. 305 (Ifnar1 / ), mice that lack transcription factors required for IFN-a/b production (Irf3 / 3 Irf5 / 3 Irf7 / ), and mice with defective pattern recognition receptor signaling (Mavs / ), all of which succumb rapidly to WNV infection (Lazear et al., 2013; Suthar et al., 2010).”
BackgroundSelf-citationMendes, A. V., Gigan, J. P., Rodrígues, C. R., Choteau, S. A., Sanséau, D., Barros, D., Almeida, C. R., Camosseto, V., Argüello, R. J., Chasson, L., et al. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.04.27.063438
“…transcription on IKKϵ/TBK1 confirms that the PPP1R15a gene belongs to a group of genes directly induced by TLR or RLR signaling, as previously suggested by ChIP-seq and transcriptomics analysis of viral or poly (I:C)-stimulated cells (Freaney et al., 2013, Lazear et al., 2013), Dalet et al., 2017).”
Backgroundda Silva, S. R., Fan, C., & Gao, S. (2018) · doi:10.1002/9781119408673.ch8
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Patil, A. M., Choi, J., Park, S. O., Uyangaa, E., Kim, B., Kim, K., & Eo, S. K. (2020) · Research Square · doi:10.21203/rs.3.rs-126754/v1
Fitzgerald, K., & Chen, Y. (2019) · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature · doi:10.3410/f.733435058.793555001
The role of USP22 in nucleic acid sensing pathways and interferon-induced necroptotic cell death
Karlowitz, R. (2024) · Publication Server of Goethe University Frankfurt am Main (Goethe University Frankfurt) · doi:10.21248/gups.81916
Albalawi, W. O., Thomas, J., Mughal, F., Roper, K. J., Alshehri, A. A., Paxton, G., & Paxton, W. A. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.07.23.604777
Lindstedt, A. J., Greene, J. T., & Freedman, T. S. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.07.07.663098
“IRF3 propels type I IFN responses through Ifnb1 expression and triggers chemokine expression (e.g., Cxcl10, Ccl5 ) (Aziz et al., 2020), whereas IRF7 induces Ifna1 expression in addition to Ifnb1 (Lazear et al., 2013).”
The transcriptomic response of ISAV and IPNV infection in Atlantic salmon cells
Reza, M. A. N., Harvey, T. N., Gamil, A. A. A., Evensen, Ø., Gillard, G. B., & Sandvik, G. K. (2025) · Aquaculture International · doi:10.1007/s10499-025-02326-9
“Upon detecting viral RNA, these PRRs initiate a signaling cascade which phosphorylates and (Lazear et al. 2013) and in Atlantic salmon TO cells (Xu et al. 2015).”
Pestivirus bovis Species Taxonomy and Genomic Sequence Characteristics
Giangaspero, M., & Zhang, S. (2026) · Advances in Microbiology · doi:10.4236/aim.2026.163006
Biologie du virus zika dans les cellules cutanées et les astrocytes
Hamel, R. (2017) · theses.fr (ABES) · doi:10.70675/c4017783z1c54z42d0z96d0z1b9ae807948c
Furnon, W. (2018) · theses.fr (ABES) · doi:10.70675/e878d6cfz62bcz4f8bza60dzcf5fae519ec7
“De plus, la production de ces molécules par les cellules résidentes du SNC (astrocytes, microglie, oligodendrocytes, neurones) induit, de manière indépendante de l’infiltration de cellules immunitaires, une réponse immune innée robuste contre l’infection à WNV (Clarke et al., 2014; Quick et al., 2014).”
BackgroundInfluentialRole of eIF2α phosphorylation in dendritic cell biology
Mendes, A. V. (2018) · theses.fr (ABES) · doi:10.70675/4925706dz277ez4498z8425z349808388e7d
Bonaventure, B. (2020) · theses.fr (ABES) · doi:10.70675/768c3190z3177z4b25z88b9z9a029e425462
Martin, M. F. (2021) · theses.fr (ABES) · doi:10.70675/e60e954czb686z4463z8169z3023a8d8e4c3
The role of the unfolded protein response in dendritic cells and multiple myeloma cells
Gigan, J. P. (2022) · theses.fr (ABES) · doi:10.70675/e412f7f8zaaafz4caaz8d4czd681169cbf7b
Essential oils promote antibacterial and antiviral defense across species
Shi, Q., Tian, P., Xu, X., Huo, L.-C., Shi, J., Wang, B., Jing, Y., & Liu, J. H. (2026) · Fish & Shellfish Immunology · doi:10.1016/j.fsi.2026.111372
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“However, IRF5, IRF3, and IRF7 reportedly have redundant roles in type I IFN and ISG responses in myeloid cells, therefore this program likely remains intact even in the absence of IRF5 72 .”
Self-citationXuan, Y., Cheng, D., Xi, Q., Sun, L., Li, N., Lei, X., Yang, M., Liu, H., Li, L., Hu, W., et al. (2026) · Translational research · doi:10.1016/j.trsl.2026.09.015
Sion, E., Rahim, S. A., & Muhamad, M. (2026) · Asia-Pacific Journal of Molecular Biology and Biotechnology · doi:10.35118/apjmbb.2026.034.3.04
The role of STAT1 in Chlamydia-induced type I interferon responses in oviduct epithelium
Hosey, K. L. (2013) · IUScholarWorks (Indiana University) · doi:10.7912/c2/1717
Metadata
- Authors
- Lazear, H. M., Lancaster, A., Wilkins, C., Suthar, M. S., Huang, A., Vick, S. C., Clepper, L., Thackray, L., Brassil, M. M., Virgin, H. W., Nikolich-Zugich, J., Moses, A. V., Gale, M., Früh, K., & Diamond, M. S.
- Affiliations
- Washington University in St. Louis (US)
- Oregon Health & Science University (US)
- University of Washington (US)
- Emory University (US)
- Vaccine and Gene Therapy Institute (US)
- Corresponding author
- Diamond, Michael S.
- ORCID
- Venue
- PLoS Pathogens
- Publisher
- Public Library of Science (PLoS)
- Published
- 2013-01-03
- Volume
- 9
- Issue
- 1
- Pages
- e1003118
- ISSN
- 1553-7366 (ISSN-L)
- 1553-7374
- PMC
- PMC3536698
- OpenAlex
- W2036679352
- Cited by
- 296
- References
- 85
- Citations by year
- 2026: 7 · 2025: 11 · 2024: 12 · 2023: 11 · 2022: 21 · 2021: 25 · 2020: 27 · 2019: 22 · 2018: 30 · 2017: 25 · 2016: 28 · 2015: 20 · 2014: 33 · 2013: 23
- FWCI
- 19.19
- Type
- journal article
- Language
- en
- Update notices
- correction (2013-05-03)
- Open access
- gold
- doi.org
- Locations
- PLoS Pathogens (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Digital Commons@Becker (Washington University School of Medicine) (submittedVersion)
- Carolina Digital Repository (University of North Carolina at Chapel Hill) (submittedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Figshare (submittedVersion, cc-by)
- UNC Libraries
- Funders
- National Institutes of Health (n01ai50027-8-0-1, AI083019, AI057160)
- National Institute of Allergy and Infectious Diseases (N01 AI50027, U19AI083019, U54AI081680, N01 AI050027, R01AI074973, U54AI057160)
- Topics
- Life Sciences › Immunology and Microbiology › Immunology › interferon and immune responses
- Life Sciences › Immunology and Microbiology › Immunology › Immune Response and Inflammation
- Life Sciences › Immunology and Microbiology › Immunology › Immunotherapy and Immune Responses
- Keywords
- IRF3, IRF5, IRF7, type I interferon, myeloid dendritic cells, MAVS, interferon-stimulated genes, West Nile virus, murine norovirus, positive-strand RNA viruses, interferon-beta, Toll-like receptor signaling, RIG-I-like receptor signaling, transcription factors, macrophages, viral pathogenesis
- MeSH terms
- Animals, Dendritic Cells, Macrophages, Mice, Inbred C57BL, West Nile Fever, West Nile virus, Signal Transduction, Interferon-beta, Mice, Knockout, Viral Load, Myeloid Cells, Adaptor Proteins, Signal Transducing, Interferon Regulatory Factors, Interferon Regulatory Factor-3, Interferon Regulatory Factor-7, Toll-Like Receptors, Mice, Receptor, Interferon alpha-beta
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