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IRF-3, IRF-5, and IRF-7 Coordinately Regulate the Type I IFN Response in Myeloid Dendritic Cells Downstream of MAVS Signaling
Open accessAbstract
Although the transcription factors IRF-3 and IRF-7 are considered master regulators of type I interferon (IFN) induction and IFN stimulated gene (ISG) expression, Irf3(-/-)×Irf7(-/-) double knockout (DKO) myeloid dendritic cells (mDC) produce relatively normal levels of IFN-β after viral infection. We generated Irf3(-/-)×Irf5(-/-)×Irf7(-/-) triple knockout (TKO) mice to test whether IRF-5 was the source of the residual induction of IFN-β and ISGs in mDCs. In pathogenesis studies with two unrelated positive-sense RNA viruses (West Nile virus (WNV) and murine norovirus), TKO mice succumbed at rates greater than DKO mice and equal to or approaching those of mice lacking the type I IFN receptor (Ifnar(-/-)). In ex vivo studies, after WNV infection or exposure to Toll-like receptor agonists, TKO mDCs failed to produce IFN-β or express ISGs. In contrast, this response was sustained in TKO macrophages following WNV infection. To define IRF-regulated gene signatures, we performed microarray analysis on WNV-infected mDC from wild type (WT), DKO, TKO, or Ifnar(-/-) mice, as well as from mice lacking the RIG-I like receptor adaptor protein MAVS. Whereas the gene induction pattern in DKO mDC was similar to WT cells, remarkably, almost no ISG induction was detected in TKO or Mavs(-/-) mDC. The relative equivalence of TKO and Mavs(-/-) responses suggested that MAVS dominantly regulates ISG induction in mDC. Moreover, we showed that MAVS-dependent induction of ISGs can occur through an IRF-5-dependent yet IRF-3 and IRF-7-independent pathway. Our results establish IRF-3, -5, and -7 as the key transcription factors responsible for mediating the type I IFN and ISG response in mDC during WNV infection and suggest a novel signaling link between MAVS and IRF-5.
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“Enhanced IFN-regulatory factor activity might also explain the observed increase in CXCL9-11 and CXCL13 (Kanda and Watanabe, 2007; Lazear et al., 2013; Muthalagu et al., 2020).”
From SHP2 inhibition diminishes KRASG12C cycling and promotes tumor microenvironment remodeling (2021) · cites this paper as Lazear et al., 2013
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Self-citationAcute Infection of Viral Pathogens and Their Innate Immune Escape
Rai, K. R., Shrestha, P., Yang, B., Chen, Y., Liu, S., Maarouf, M., & Chen, J. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.672026 · Cited by 87
“The PRR-mediated signaling pathways ultimately lead to the secretion of numerous antiviral molecules, including type I and type III IFNs, and other pro-inflammatory cytokines and chemokines (Koyama et al., 2008; Ishikawa et al., 2009; Kawai and Akira, 2010; Rathinam and Fitzgerald, 2011; Jensen and Thomsen, 2012; Goub…”
BackgroundInfluentialHost Competence: An Organismal Trait to Integrate Immunology and Epidemiology
Martin, L. B., Burgan, S. C., Adelman, J. S., & Gervasi, S. S. (2016) · Integrative and Comparative Biology · doi:10.1093/icb/icw064 · Cited by 83
Traumatic Brain Injury Induces cGAS Activation and Type I Interferon Signaling in Aged Mice
Barrett, J. P., Knoblach, S. M., Bhattacharya, S., Gordish‐Dressman, H., Stoica, B. A., & Loane, D. J. (2021) · Frontiers in Immunology · doi:10.3389/fimmu.2021.710608 · Cited by 90
Innate immune escape by Dengue and West Nile viruses
Gack, M. U., & Diamond, M. (2016) · Current Opinion in Virology · doi:10.1016/j.coviro.2016.09.013 · Cited by 83
Self-citationFeng, H., Zhang, Q.-M., Zhang, Y.-B., Li, Z., Zhang, J., Xiong, Y.-W., Wu, M., & Gui, J. (2016) · The Journal of Immunology · doi:10.4049/jimmunol.1600159 · Cited by 79
“IRF3, IRF5, and IRF7 coordinately act in myeloid DCs downstream of mitochondrial antiviral signaling protein signaling (20).”
BackgroundRevisiting IRF1-mediated antiviral innate immunity
Zhou, H., Tang, Y., & Zheng, C. (2022) · Cytokine & Growth Factor Reviews · doi:10.1016/j.cytogfr.2022.01.004 · Cited by 83
A Role for Ifit2 in Restricting West Nile Virus Infection in the Brain
Cho, H., Shrestha, B., Sen, G. C., & Diamond, M. (2013) · Journal of Virology · doi:10.1128/jvi.01097-13 · Cited by 82
“cells by plaque or focus-forming assay as described previously (27, 28).”
MethodSelf-citationThe Roles of IRF-3 and IRF-7 in Innate Antiviral Immunity against Dengue Virus
Chen, H., King, K., Tu, J., Sanchez, M., Luster, A. D., & Shresta, S. (2013) · The Journal of Immunology · doi:10.4049/jimmunol.1300799 · Cited by 81
“Based on the most recent publication reporting that the MAVS-dependent induction of ISGs in WNVinfected mDCs can occur through an IRF-5–dependent pathway in the absence of IRF-3 and IRF-7 (25), IRF-5 is a likely candidate for the IRF-3– and IRF-7–independent signaling against DENV.”
BackgroundRsad2 is necessary for mouse dendritic cell maturation via the IRF7-mediated signaling pathway
Jang, J.-S., Lee, J., Jung, N.-C., Choi, S.-Y., Park, S.-Y., Yoo, J. Y., Song, J., Seo, H. G., Lee, H. S., & Lim, D. (2018) · Cell Death and Disease · doi:10.1038/s41419-018-0889-y · Cited by 82
At the crossway of ER‐stress and proinflammatory responses
Reverendo, M., Mendes, A., Argüello, R., Gatti, E., & Pierre, P. (2019) · The FEBS Journal · doi:10.1111/febs.14391 · Cited by 72
Protein synthesis inhibition and GADD34 control IFN‐β heterogeneous expression in response to dsRNA
Dalet, A., Argüello, R. J., Combes, A. J., Spinelli, L., Jaeger, S., Fallet, M., Manh, T. V., Mendes, A. V., Perego, J., Reverendo, M., et al. (2017) · The EMBO Journal · doi:10.15252/embj.201695000 · Cited by 77
DNA-binding landscape of IRF3, IRF5 and IRF7 dimers: implications for dimer-specific gene regulation
Andrilenas, K. K., Ramlall, V., Kurland, J. V., Leung, B., Harbaugh, A. G., & Siggers, T. (2018) · Nucleic Acids Research · doi:10.1093/nar/gky002 · Cited by 77
Intestinal Dysmotility Syndromes following Systemic Infection by Flaviviruses
White, J. P., Xiong, S., Malvin, N. P., Khoury-Hanold, W., Heuckeroth, R. O., Stappenbeck, T. S., & Diamond, M. (2018) · Cell · doi:10.1016/j.cell.2018.08.069 · Cited by 75
Self-citationHERC5 and the ISGylation Pathway: Critical Modulators of the Antiviral Immune Response
Mathieu, N. A., Paparisto, E., Barr, S. D., & Spratt, D. E. (2021) · Viruses · doi:10.3390/v13061102 · Cited by 84
Carlin, A. F., Plummer, E. M., Vizcarra, E. A., Sheets, N., Joo, Y., Tang, W. W., Day, J., Greenbaum, J., Glass, C. K., Diamond, M., et al. (2017) · Cell Reports · doi:10.1016/j.celrep.2017.10.054 · Cited by 77
“IRF-1, IRF-3, IRF-5, and IRF-7 contribute to the suppression of viruses, oftentimes in a cell-type- and viral-specific manner (Brien et al., 2011; Chen et al., 2013; Lazear et al., 2013).”
BackgroundMethodSelf-citationInterfering with immunity: detrimental role of type I IFNs during infection
Stifter, S. A., & Feng, C. G. (2015) · The Journal of Immunology · doi:10.4049/jimmunol.1402794 · Cited by 78
Molecular mechanisms controlling age‐associated B cells in autoimmunity*
Phalke, S., Rivera‐Correa, J., Jenkins, D., Flores-Castro, D., Γιαννοπούλου, Ε., & Pernis, A. B. (2022) · Immunological Reviews · doi:10.1111/imr.13068 · Cited by 79
Ding, S., Zhu, S., Ren, L., Feng, N., Song, Y., Ge, X., Li, B., Flavell, R. A., & Greenberg, H. B. (2018) · eLife · doi:10.7554/elife.39494 · Cited by 72
Rasa, S. M. M., Annunziata, F., Křepelová, A., Nunna, S., Omrani, O., Gebert, N., Adam, L., Käppel, S., Hoehn, S., Donati, G., et al. (2022) · Cell Reports · doi:10.1016/j.celrep.2022.111017 · Cited by 72
Webster, B., Werneke, S. W., Zafirova, B., This, S., Coléon, S., Décembre, É., Païdassi, H., Bouvier, I., Joubert, P.-E., Duffy, D., et al. (2018) · eLife · doi:10.7554/elife.34273 · Cited by 73
“…the persistence of IFN-I-mediated viral control under these conditions depends on IRF5 or IRF1 signaling ( Carlin et al., 2017 ; Chen et al., 2013 ; Lazear et al., 2013 ; Rudd et al., 2012 ), as control of flaviviral infections is still contingent on IFNAR signaling in the absence of Irf3/Irf7…”
Lucas, T. M., Richner, J. M., & Diamond, M. S. (2015) · Journal of Virology · doi:10.1128/jvi.02463-15 · Cited by 77
Self-citationSun, J., Ye, F., Wu, A., Yang, R., Pan, M., Sheng, J., Zhu, W., Mao, L., Wang, M., Xia, Z., et al. (2020) · Frontiers in Microbiology · doi:10.3389/fmicb.2020.593857 · Cited by 67
“Among the four regulator genes, IRF7 is responsible for the expression of most IFN-α subtypes and the type I IFN amplification loop (Lazear et al., 2013), and IRF9, STAT1, and STAT2 form the ISGF3 complex that binds to interferonstimulated response elements and thereby induces the expression of interferon-stimulated g…”
BackgroundDeficient IFN Signaling by Myeloid Cells Leads to MAVS-Dependent Virus-Induced Sepsis
Pinto, A. K., Ramos, H. J., Wu, X., Aggarwal, S., Shrestha, B., Gorman, M. J., Kim, K. Y., Suthar, M. S., Atkinson, J. P., Gale, M., et al. (2014) · PLoS Pathogens · doi:10.1371/journal.ppat.1004086 · Cited by 67
“A similar phenomenon was observed ex vivo after WNV infection of Ifnar BMDCs, in which a maximum of 10 to 20% of cells was infected even at high multiplicities of infection [35].”
BackgroundSelf-citationRubinow, K. B., Wall, V., Nelson, J. D., Mar, D., Bomsztyk, K., Askari, B., Lai, M. A., Smith, K. D., Han, M. S., Vivekanandan‐Giri, A., et al. (2013) · Journal of Biological Chemistry · doi:10.1074/jbc.m113.458372 · Cited by 67
“For example, macrophages deficient in IRF3, IRF5, and IRF7 are still able to produce IFN- following viral infection (48).”
BackgroundGrowing tumors induce a local STING dependent Type I IFN response in dendritic cells
Andzinski, L., Spanier, J., Kasnitz, N., Kröger, A., Jin, L., Brinkmann, M. M., Kalinke, U., Weiß, S., Jabłońska, J., & Lienenklaus, S. (2016) · International Journal of Cancer · doi:10.1002/ijc.30159 · Cited by 67
“They had been shown to depend on IRF5 for induction of Type I IFN after viral infections.(14) From the receptors responsible for induction of Type I IFN under our conditions, we excluded TLRs and we found a minor contribution of RLRs.”
BackgroundSiegfried, A., Berchtold, S., Manncke, B., Deuschle, E., Reber, J., Ott, T., Weber, M., Kalinke, U., Hofer, M. J., Hatesuer, B., et al. (2013) · The Journal of Immunology · doi:10.4049/jimmunol.1203305 · Cited by 70
“Transfection experiments showed that IFIT3 bridges MAVSwith TBK1 and thus (40) upregulates IRF3 phosphorylation and subsequently IFN-b expression.”
BackgroundZBTB24 is a transcriptional regulator that coordinates with DNMT3B to control DNA methylation
Thompson, J. J., Kaur, R., Sosa, C. P., Lee, J., Kashiwagi, K., Zhou, D., & Robertson, K. D. (2018) · Nucleic Acids Research · doi:10.1093/nar/gky682 · Cited by 67
“IPA analysis predicts that the transcription factors IRF3/IRF5/IRF7, which share overlapping and distinct functions in regulating the type I interferon response (50,51), are targeted for activation in the absence of ZBTB24, while TRIM24, a cofactor coordinating with hormone receptors to drive proliferation (52) and ne…”
BackgroundNon-structural proteins of bovine viral diarrhea virus
Chi, S., Chen, S. E., Jia, W., He, Y., Ren, L., & Wang, X. (2022) · Virus Genes · doi:10.1007/s11262-022-01914-8 · Cited by 64
Protective and Pathogenic Effects of Interferon Signaling During Pregnancy
Casazza, R. L., Lazear, H. M., & Miner, J. J. (2019) · Viral Immunology · doi:10.1089/vim.2019.0076 · Cited by 60
“Uncontrolled viral replication and dysregulated cytokine signaling in Ifnar1 mice result in high serum concentrations of type I IFN (60,86), which could contribute to severe infection-induced pathology in Ifnar1 fetuses within Ifnar1 dams.”
Self-citationInterleukin-1β Signaling in Dendritic Cells Induces Antiviral Interferon Responses
Aarreberg, L. D., Wilkins, C. R., Ramos, H. J., Green, R. R., Davis, M. A., Chow, K. T., & Gale, M. (2018) · mBio · doi:10.1128/mbio.00342-18 · Cited by 64
Self-citationO’Neal, J. T., Upadhyay, A. A., Wolabaugh, A. N., Patel, N. B., Bosinger, S. E., & Suthar, M. S. (2019) · Journal of Virology · doi:10.1128/jvi.01778-18 · Cited by 57
“Pattern recognition 75 receptors, including toll-like receptors (TLRs) and retinoic acid-inducible gene I (RIG-I)76 like receptors (RLRs), detect broad viral signatures, such as 5’-triphosphate ssRNA or 77 dsRNA, in the cytosolic and endosomal compartments (9, 11, 12, 14).”
BackgroundSelf-citationLazear, H. M., Pinto, A. K., Ramos, H. J., Vick, S. C., Shrestha, B., Suthar, M. S., Gale, M., & Diamond, M. (2013) · Journal of Virology · doi:10.1128/jvi.01403-13 · Cited by 61
Self-citationHatesuer, B., Hoang, H. T. T., Riese, P., Trittel, S., Gerhauser, I., Elbahesh, H., Geffers, R., Wilk, E., & Schughart, K. (2016) · Journal of Innate Immunity · doi:10.1159/000450705 · Cited by 61
Proença‐Módena, J. L., Hyde, J., Sesti‐Costa, R., Lucas, T. M., Pinto, A. K., Richner, J. M., Gorman, M. J., Lazear, H. M., & Diamond, M. (2015) · Journal of Virology · doi:10.1128/jvi.02276-15 · Cited by 58
“After MAVS signaling, IRF-5 acts coordinately with IRF-3 and IRF-7 to regulate type I IFN responses in myeloid DCs after West Nile virus (WNV) infection (18).”
BackgroundSelf-citationRodriguez, M. R., Monte, K. J., Thackray, L. B., & Lenschow, D. J. (2014) · Journal of Virology · doi:10.1128/jvi.01422-14 · Cited by 58
“(C) WT (W), ISG15 / (15), and UbE1L / (U) BMDC were either left untreated or pre- and posttreated with 1,000 U/ml of IFN- 4 prior to infection with MNV-1 at an MOI of 0.”
MethodSelf-citationTemporal control of the integrated stress response by a stochastic molecular switch
Klein, P., Kallenberger, S. M., Roth, H., Roth, K., Ly-Hartig, T. B. N., Magg, V., Aleš, J., Talemi, S. R., Qiang, Y., Wolf, S., et al. (2022) · Science Advances · doi:10.1126/sciadv.abk2022 · Cited by 50
“factor (IRF) 3 and IRF7, downstream of the RNA sensing innate immune pathway (38, 39).”
Hannibal, T. D., Schmidt-Christensen, A., Nilsson, J., Fransén-Pettersson, N., Hansen, L., & Holmberg, D. (2017) · Diabetologia · doi:10.1007/s00125-017-4341-0 · Cited by 60
“and macrophages from IRF-7 knockout mice were still able to produce normal levels of IFN-β [18].”
BackgroundSUMO2 and SUMO3 redundantly prevent a noncanonical type I interferon response
Crowl, J. T., & Stetson, D. B. (2018) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1802114115 · Cited by 56
“Alternatively, IRF5 has been shown to be important for IFN response to some RNA viruses (25).”
BackgroundThe brain parenchyma has a type I interferon response that can limit virus spread
Drokhlyansky, E., Aytürk, D. G., Soh, T. K., Chrenek, R., O'Loughlin, E. K., Madore, C., Butovsky, O., & Cepko, C. L. (2016) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1618157114 · Cited by 55
“To further investigate the induction of the type I IFN response, the expression of several known ISGs—Rsad2, Cxcl10, and Oas1α—was assayed (43).”
MethodFormulation, inflammation, and RNA sensing impact the immunogenicity of self-amplifying RNA vaccines
Tregoning, J. S., Stirling, D. C., Wang, Z., Flight, K. E., Brown, J. C., Blakney, A. K., McKay, P. F., Cunliffe, R. F., Murugaiah, V., Fox, C. B., et al. (2022) · Molecular Therapy — Nucleic Acids · doi:10.1016/j.omtn.2022.11.024 · Cited by 57
“It was of interest that there was significantly more IFN-b in the blood of Ifnar1 / than control mice; this may reflect increased replication of the saRNA construct or a failure to regulate the IFN response, where a similar increase in sera IFN has been seen in West Nile virus infection.(27) Whether differences seen b…”
ResultKim, T. H., & Zhou, H. (2015) · PLoS ONE · doi:10.1371/journal.pone.0133450 · Cited by 55
Metadata
- Authors
- Lazear, H. M., Lancaster, A., Wilkins, C., Suthar, M. S., Huang, A., Vick, S. C., Clepper, L., Thackray, L., Brassil, M. M., Virgin, H. W., Nikolich-Zugich, J., Moses, A. V., Gale, M., Früh, K., & Diamond, M. S.
- Affiliations
- Washington University in St. Louis (US)
- Oregon Health & Science University (US)
- University of Washington (US)
- Emory University (US)
- Vaccine and Gene Therapy Institute (US)
- Corresponding author
- Diamond, Michael S.
- ORCID
- Venue
- PLoS Pathogens
- Publisher
- Public Library of Science (PLoS)
- Published
- 2013-01-03
- Volume
- 9
- Issue
- 1
- Pages
- e1003118
- ISSN
- 1553-7366 (ISSN-L)
- 1553-7374
- PMC
- PMC3536698
- OpenAlex
- W2036679352
- Cited by
- 296
- References
- 85
- Citations by year
- 2026: 7 · 2025: 11 · 2024: 12 · 2023: 11 · 2022: 21 · 2021: 25 · 2020: 27 · 2019: 22 · 2018: 30 · 2017: 25 · 2016: 28 · 2015: 20 · 2014: 33 · 2013: 23
- FWCI
- 19.19
- Type
- journal article
- Language
- en
- Update notices
- correction (2013-05-03)
- Open access
- gold
- doi.org
- Locations
- PLoS Pathogens (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Digital Commons@Becker (Washington University School of Medicine) (submittedVersion)
- Carolina Digital Repository (University of North Carolina at Chapel Hill) (submittedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Figshare (submittedVersion, cc-by)
- UNC Libraries
- Funders
- National Institutes of Health (n01ai50027-8-0-1, AI083019, AI057160)
- National Institute of Allergy and Infectious Diseases (N01 AI50027, U19AI083019, U54AI081680, N01 AI050027, R01AI074973, U54AI057160)
- Topics
- Life Sciences › Immunology and Microbiology › Immunology › interferon and immune responses
- Life Sciences › Immunology and Microbiology › Immunology › Immune Response and Inflammation
- Life Sciences › Immunology and Microbiology › Immunology › Immunotherapy and Immune Responses
- Keywords
- IRF3, IRF5, IRF7, type I interferon, myeloid dendritic cells, MAVS, interferon-stimulated genes, West Nile virus, murine norovirus, positive-strand RNA viruses, interferon-beta, Toll-like receptor signaling, RIG-I-like receptor signaling, transcription factors, macrophages, viral pathogenesis
- MeSH terms
- Animals, Dendritic Cells, Macrophages, Mice, Inbred C57BL, West Nile Fever, West Nile virus, Signal Transduction, Interferon-beta, Mice, Knockout, Viral Load, Myeloid Cells, Adaptor Proteins, Signal Transducing, Interferon Regulatory Factors, Interferon Regulatory Factor-3, Interferon Regulatory Factor-7, Toll-Like Receptors, Mice, Receptor, Interferon alpha-beta
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