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Mycobacterium marinum antagonistically induces an autophagic response while repressing the autophagic flux in a TORC1- and ESX-1-dependent manner

Cardenal-Muñoz, Elena, Arafah, Sonia, López-Jiménez, Ana Teresa, Kicka, Sébastien, Falaise, Alexandra, Bach, Frauke, Schaad, Olivier, King, Jason S., Hagedorn, Monica, Soldati, Thierry·2017·PLOS Pathogens

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Research works printed but not linked: 69

  1. CC Dibble, 2013, Signal integration by mTORC1 coordinates nutrient input with biosynthetic output, Nat Cell Biol, 15, 555, 10.1038/ncb2763 · DOI
  2. S Sengupta, 2010, Regulation of the mTOR complex 1 pathway by nutrients, growth factors, and stress, Mol Cell, 40, 310, 10.1016/j.molcel.2010.09.026 · DOI
  3. J Calvo-Garrido, 2010, Autophagy in Dictyostelium: genes and pathways, cell death and infection, Autophagy, 6, 686, 10.4161/auto.6.6.12513 · DOI
  4. SR Carlsson, 2015, Membrane dynamics in autophagosome biogenesis, J Cell Sci, 128, 193, 10.1242/jcs.141036 · DOI
  5. S Mostowy, 2013, Autophagy and bacterial clearance: a not so clear picture, Cell Microbiol, 15, 395, 10.1111/cmi.12063 · DOI
  6. A Schnaith, 2007, Staphylococcus aureus subvert autophagy for induction of caspase-independent host cell death, J Biol Chem, 282, 2695, 10.1074/jbc.M609784200 · DOI
  7. JA MacGurn, 2007, A genetic screen for Mycobacterium tuberculosis mutants defective for phagosome maturation arrest identifies components of the ESX-1 secretion system, Infect Immun, 75, 2668, 10.1128/IAI.01872-06 · DOI
  8. M Hagedorn, 2009, Infection by tubercular mycobacteria is spread by nonlytic ejection from their amoeba hosts, Science, 323, 1729, 10.1126/science.1169381 · DOI
  9. EF Castillo, 2012, Autophagy protects against active tuberculosis by suppressing bacterial burden and inflammation, Proc Natl Acad Sci U S A, 109, E3168, 10.1073/pnas.1210500109 · DOI
  10. A Romagnoli, 2012, ESX-1 dependent impairment of autophagic flux by Mycobacterium tuberculosis in human dendritic cells, Autophagy, 8, 1357, 10.4161/auto.20881 · DOI
  11. DM Shin, 2010, Mycobacterium tuberculosis eis regulates autophagy, inflammation, and cell death through redox-dependent signaling, PLoS Pathog, 6, e1001230, 10.1371/journal.ppat.1001230 · DOI
  12. S Mohanty, 2015, A mycobacterial phosphoribosyltransferase promotes bacillary survival by inhibiting oxidative stress and autophagy pathways in macrophages and zebrafish, J Biol Chem, 290, 13321, 10.1074/jbc.M114.598482 · DOI
  13. W Shui, 2011, Organelle membrane proteomics reveals differential influence of mycobacterial lipoglycans on macrophage phagosome maturation and autophagosome accumulation, J Proteome Res, 10, 339, 10.1021/pr100688h · DOI
  14. L Srinivasan, 2016, Identification of a Transcription Factor That Regulates Host Cell Exit and Virulence of Mycobacterium tuberculosis, PLoS Pathog, 12, e1005652, 10.1371/journal.ppat.1005652 · DOI
  15. D Hu, 2015, Autophagy regulation revealed by SapM-induced block of autophagosome-lysosome fusion via binding RAB7, Biochem Biophys Res Commun, 461, 401, 10.1016/j.bbrc.2015.04.051 · DOI
  16. J Augenstreich, 2017, ESX-1 and phthiocerol dimycocerosates of Mycobacterium tuberculosis act in concert to cause phagosomal rupture and host cell apoptosis, Cell Microbiol
  17. DM Tobin, 2008, Comparative pathogenesis of Mycobacterium marinum and Mycobacterium tuberculosis, Cell Microbiol, 10, 1027, 10.1111/j.1462-5822.2008.01133.x · DOI · Paper page
  18. MC Lerena, 2011, Mycobacterium marinum induces a marked LC3 recruitment to its containing phagosome that depends on a functional ESX-1 secretion system, Cell Microbiol, 13, 814, 10.1111/j.1462-5822.2011.01581.x · DOI · Paper page
  19. J Smith, 2008, Evidence for pore formation in host cell membranes by ESX-1-secreted ESAT-6 and its role in Mycobacterium marinum escape from the vacuole, Infect Immun, 76, 5478, 10.1128/IAI.00614-08 · DOI
  20. S Bozzaro, 2011, The professional phagocyte Dictyostelium discoideum as a model host for bacterial pathogens, Curr Drug Targets, 12, 942, 10.2174/138945011795677782 · DOI
  21. A Mesquita, 2016, Autophagy in Dictyostelium: Mechanisms, regulation and disease in a simple biomedical model, Autophagy, 1
  22. L Gerstenmaier, 2015, The autophagic machinery ensures nonlytic transmission of mycobacteria, Proc Natl Acad Sci U S A, 112, E687, 10.1073/pnas.1423318112 · DOI
  23. A Mesquita, 2015, Dissecting the function of Atg1 complex in Dictyostelium autophagy reveals a connection with the pentose phosphate pathway enzyme transketolase, Open Biol, 5, 10.1098/rsob.150088 · DOI
  24. JS King, 2011, The induction of autophagy by mechanical stress, Autophagy, 7, 1490, 10.4161/auto.7.12.17924 · DOI
  25. PB Swer, 2014, Analysis of rapamycin induced autophagy in Dictyostelium discoideum, Indian J Exp Biol, 52, 295
  26. HE Polson, 2010, Mammalian Atg18 (WIPI2) localizes to omegasome-anchored phagophores and positively regulates LC3 lipidation, Autophagy, 6, 506, 10.4161/auto.6.4.11863 · DOI · Paper page
  27. M Gao, 2008, OSU-03012, a novel celecoxib derivative, induces reactive oxygen species-related autophagy in hepatocellular carcinoma, Cancer Res, 68, 9348, 10.1158/0008-5472.CAN-08-1642 · DOI
  28. S Huang, 2011, Inhibition of mTOR kinase by AZD8055 can antagonize chemotherapy-induced cell death through autophagy induction and down-regulation of p62/sequestosome 1, J Biol Chem, 286, 40002, 10.1074/jbc.M111.297432 · DOI
  29. QW Fan, 2006, A dual PI3 kinase/mTOR inhibitor reveals emergent efficacy in glioma, Cancer Cell, 9, 341, 10.1016/j.ccr.2006.03.029 · DOI
  30. GP Otto, 2004, Dictyostelium macroautophagy mutants vary in the severity of their developmental defects, J Biol Chem, 279, 15621, 10.1074/jbc.M311139200 · DOI
  31. M Hagedorn, 2007, Flotillin and RacH modulate the intracellular immunity of Dictyostelium to Mycobacterium marinum infection, Cell Microbiol, 9, 2716, 10.1111/j.1462-5822.2007.00993.x · DOI
  32. MG Gutierrez, 2005, Autophagy induction favours the generation and maturation of the Coxiella-replicative vacuoles, Cell Microbiol, 7, 981, 10.1111/j.1462-5822.2005.00527.x · DOI
  33. C Pujol, 2009, Yersinia pestis can reside in autophagosomes and avoid xenophagy in murine macrophages by preventing vacuole acidification, Infect Immun, 77, 2251, 10.1128/IAI.00068-09 · DOI
  34. CA Collins, 2009, Atg5-independent sequestration of ubiquitinated mycobacteria, PLoS Pathog, 5, e1000430, 10.1371/journal.ppat.1000430 · DOI
  35. X Peng, 2016, Characterization of differential pore-forming activities of ESAT-6 proteins from Mycobacterium tuberculosis and Mycobacterium smegmatis, FEBS Lett, 590, 509, 10.1002/1873-3468.12072 · DOI
  36. M Abdel-Nour, 2014, The emerging role of mTOR signalling in antibacterial immunity, Immunol Cell Biol, 92, 346, 10.1038/icb.2014.3 · DOI
  37. LY Gao, 2004, A mycobacterial virulence gene cluster extending RD1 is required for cytolysis, bacterial spreading and ESAT-6 secretion, Mol Microbiol, 53, 1677, 10.1111/j.1365-2958.2004.04261.x · DOI
  38. AS Pym, 2002, Loss of RD1 contributed to the attenuation of the live tuberculosis vaccines Mycobacterium bovis BCG and Mycobacterium microti, Mol Microbiol, 46, 709, 10.1046/j.1365-2958.2002.03237.x · DOI · Paper page
  39. CA Lamb, 2013, The autophagosome: origins unknown, biogenesis complex, Nat Rev Mol Cell Biol, 14, 759, 10.1038/nrm3696 · DOI
  40. J Zhang, 2016, Autophagic lysosomal reformation depends on mTOR reactivation in H2O2-induced autophagy, Int J Biochem Cell Biol, 70, 76, 10.1016/j.biocel.2015.11.009 · DOI
  41. M Binda, 2009, The Vam6 GEF controls TORC1 by activating the EGO complex, Mol Cell, 35, 563, 10.1016/j.molcel.2009.06.033 · DOI
  42. L Bar-Peled, 2014, Regulation of mTORC1 by amino acids, Trends Cell Biol, 24, 400, 10.1016/j.tcb.2014.03.003 · DOI · Paper page
  43. M Steinert, 2011, Pathogen-host interactions in Dictyostelium, Legionella, Mycobacterium and other pathogens, Semin Cell Dev Biol, 22, 70, 10.1016/j.semcdb.2010.11.003 · DOI
  44. M van der Vaart, 2014, The DNA damage-regulated autophagy modulator DRAM1 links mycobacterial recognition via TLR-MYD88 to autophagic defense [corrected], Cell Host Microbe, 15, 753, 10.1016/j.chom.2014.05.005 · DOI
  45. J Geng, 2008, The Atg8 and Atg12 ubiquitin-like conjugation systems in macroautophagy. 'Protein modifications: beyond the usual suspects' review series, EMBO Rep, 9, 859, 10.1038/embor.2008.163 · DOI
  46. S Kreibich, 2015, Autophagy Proteins Promote Repair of Endosomal Membranes Damaged by the Salmonella Type Three Secretion System 1, Cell Host Microbe, 18, 527, 10.1016/j.chom.2015.10.015 · DOI
  47. RO Watson, 2012, Extracellular M. tuberculosis DNA targets bacteria for autophagy by activating the host DNA-sensing pathway, Cell, 150, 803, 10.1016/j.cell.2012.06.040 · DOI · Paper page
  48. SB Singh, 2006, Human IRGM induces autophagy to eliminate intracellular mycobacteria, Science, 313, 1438, 10.1126/science.1129577 · DOI · Paper page
  49. LM Shaughnessy, 2006, Membrane perforations inhibit lysosome fusion by altering pH and calcium in Listeria monocytogenes vacuoles, Cell Microbiol, 8, 781, 10.1111/j.1462-5822.2005.00665.x · DOI
  50. JK Malet, 2017, Alteration of epithelial cell lysosomal integrity induced by bacterial cholesterol-dependent cytolysins, Cell Microbiol, 19, 10.1111/cmi.12682 · DOI
  51. AJ Zullo, 2012, Mycobacterial induction of autophagy varies by species and occurs independently of mammalian target of rapamycin inhibition, J Biol Chem, 287, 12668, 10.1074/jbc.M111.320135 · DOI
  52. H Dong, 2016, ESAT6 inhibits autophagy flux and promotes BCG proliferation through MTOR, Biochem Biophys Res Commun
  53. J Faix, 2004, A rapid and efficient method to generate multiple gene disruptions in Dictyostelium discoideum using a single selectable marker and the Cre-loxP system, Nucleic Acids Res, 32, e143, 10.1093/nar/gnh136 · DOI
  54. S Arafah, 2013, Setting up and monitoring an infection of Dictyostelium discoideum with mycobacteria, Methods Mol Biol, 983, 403, 10.1007/978-1-62703-302-2_22 · DOI
  55. KG Foster, 2010, Regulation of mTOR complex 1 (mTORC1) by raptor Ser863 and multisite phosphorylation, J Biol Chem, 285, 80, 10.1074/jbc.M109.029637 · DOI
  56. AC Gingras, 1999, Regulation of 4E-BP1 phosphorylation: a novel two-step mechanism, Genes Dev, 13, 1422, 10.1101/gad.13.11.1422 · DOI
  57. K Ravanel, 2001, Membrane sorting in the endocytic and phagocytic pathway of Dictyostelium discoideum, Eur J Cell Biol, 80, 754, 10.1078/0171-9335-00215 · DOI
  58. R Dieckmann, 2010, A myosin IK-Abp1-PakB circuit acts as a switch to regulate phagocytosis efficiency, Mol Biol Cell, 21, 1505, 10.1091/mbc.E09-06-0485 · DOI
  59. UK Laemmli, 1970, Cleavage of structural proteins during the assembly of the head of bacteriophage T4, Nature, 227, 680, 10.1038/227680a0 · DOI · Paper page
  60. EC Schwarz, 2000, Dictyostelium myosin IK is involved in the maintenance of cortical tension and affects motility and phagocytosis, J Cell Sci, 113, 621, 10.1242/jcs.113.4.621 · DOI
  61. M Hagedorn, 2006, Optimized fixation and immunofluorescence staining methods for Dictyostelium cells, Methods Mol Biol, 346, 327
  62. C Barisch, 2015, Live imaging of Mycobacterium marinum infection in Dictyostelium discoideum, Methods Mol Biol, 1285, 369, 10.1007/978-1-4939-2450-9_23 · DOI
  63. A Marchetti, 2004, Formation of multivesicular endosomes in Dictyostelium, J Cell Sci, 117, 6053, 10.1242/jcs.01524 · DOI
  64. C Barisch, 2015, Lipid droplet dynamics at early stages of Mycobacterium marinum infection in Dictyostelium, Cell Microbiol, 17, 1332, 10.1111/cmi.12437 · DOI
  65. J Calvo-Garrido, 2011, A proteolytic cleavage assay to monitor autophagy in Dictyostelium discoideum, Autophagy, 7, 1063, 10.4161/auto.7.9.16629 · DOI · Paper page
  66. B Phipson, 2010, Permutation P-values should never be zero: calculating exact P-values when permutations are randomly drawn, Stat Appl Genet Mol Biol, 9, 10.2202/1544-6115.1585 · DOI · Paper page
  67. I Tattoli, 2013, Listeria phospholipases subvert host autophagic defenses by stalling pre-autophagosomal structures, EMBO J, 32, 3066, 10.1038/emboj.2013.234 · DOI
  68. I Tattoli, 2012, The bacterial and cellular determinants controlling the recruitment of mTOR to the Salmonella-containing vacuole, Biol Open, 1, 1215, 10.1242/bio.20122840 · DOI
  69. I Tattoli, 2012, Amino acid starvation induced by invasive bacterial pathogens triggers an innate host defense program, Cell Host Microbe, 11, 563, 10.1016/j.chom.2012.04.012 · DOI

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Metadata

Authors
Cardenal-Muñoz, E., Arafah, S., López-Jiménez, A. T., Kicka, S., Falaise, A., Bach, F., Schaad, O., King, J. S., Hagedorn, M., & Soldati, T.
Venue
PLOS Pathogens
Published
2017-04-17
Volume
13
Issue
4
Pages
e1006344
ISSN
1553-7374
Cited by
84
References
8
Language
en
Funders
  • Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (310030_149390)
  • European Cooperation in Science and Technology (CA15138)

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