Cited by 10Genetic Mapping and Diversity in Plants and AnimalsGenetic Associations and EpidemiologyGenetic and phenotypic traits in livestock

Dissecting the Genetic Architecture of Cystatin C in Diversity Outbred Mice

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Huda, M Nazmul, VerHague, Melissa, Albright, Jody, Smallwood, Tangi, Bell, Timothy A, Que, Excel, Miller, Darla R, Roshanravan, Baback +3 more·2020·G3 Genes|Genomes|Genetics

Abstract

Plasma concentration of Cystatin C (CysC) level is a biomarker of glomerular filtration rate in the kidney. We use a Systems Genetics approach to investigate the genetic determinants of plasma CysC concentration. To do so we perform Quantitative Trait Loci (QTL) and expression QTL (eQTL) analysis of 120 Diversity Outbred (DO) female mice, 56 weeks of age. We performed network analysis of kidney gene expression to determine if the gene modules with common functions are associated with kidney biomarkers of chronic kidney diseases. Our data demonstrates that plasma concentrations and kidney mRNA levels of CysC are associated with genetic variation and are transcriptionally coregulated by immune genes. Specifically, Type-I interferon signaling genes are coexpressed with Cst3 mRNA levels and associated with CysC concentrations in plasma. Our findings demonstrate the complex control of CysC by genetic polymorphisms and inflammatory pathways.

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  • QTL mapping in multiparent populations has identified genetic modifiers for viral response, kidney disease, atherosclerosis, and heart size.

    “For example, QTL mapping in these multiparent populations resulted in the identi cation of genetic modi ers for the viral response [13,14], kidney disease [15], atherosclerosis [16] and heart size [17].”

    From Identification of Genetic Variants Regulating the Abundance of Clinically Relevant Plasma Proteins using the Diversity Outbred Mouse Model (2021) · cites this paper as [15]

    The Results (page not provided) report that QTL mapping in Diversity Outbred mice identified a locus affecting plasma cystatin C, a kidney biomarker. The Discussion (page not provided) says the study found no QTL for other kidney traits. This supports genetic mapping of a kidney-related biomarker, but not the stronger claim that it identified a modifier of kidney disease itself; this citation is attached only to the kidney-disease example. (LLM, conf=0.88)

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Authors
Huda, M. N., VerHague, M., Albright, J., Smallwood, T., Bell, T. A., Que, E., Miller, D. R., Roshanravan, B., Allayee, H., Manuel de Villena, F. P., & Bennett, B. J.
Affiliations
  • Western Human Nutrition Research Center (US)
  • Nutrition Research Institute, University of North Carolina Kannapolis, North Carolina 28081
  • University of North Carolina at Chapel Hill (US)
  • University of California, Davis (US)
  • University of Southern California (US)
  • Department of Genetics, University of North Carolina at Chapel Hill, North Carolina 27599
Corresponding author
Bennett, Brian J
Venue
G3 Genes|Genomes|Genetics
Published
2020-07-01
Volume
10
Issue
7
Pages
2529-2541
ISSN
2160-1836 (ISSN-L)
OpenAlex
W3029431182
Cited by
10
References
59
Citations by year
2026: 1 · 2024: 1 · 2023: 3 · 2022: 1 · 2021: 2 · 2020: 2
FWCI
1.17
Type
journal article
Language
en
Open access
Locations
  • G3 Genes Genomes Genetics (publishedVersion, other-oa)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
  • eScholarship (California Digital Library) (submittedVersion, cc-by)
Funders
  • U.S. Environmental Protection Agency (RD-83544101, P01ES022845)
  • U.S. Department of Agriculture (2032-51000-022-00D)
  • National Institutes of Health (AG038070, U42OD010924)
  • University of California, Davis
  • Agricultural Research Service (2032-51000-022-00D)
  • National Institute on Aging (P30AG038070)
  • National Heart, Lung, and Blood Institute (R01HL133169, R01HL128572)
  • National Institute of Diabetes and Digestive and Kidney Diseases (RD83544101, K23 DK0099442, K23DK099442, R03DK114502, P30DK056350)
  • National Institute of Environmental Health Sciences (R01ES025786, P01ES022845, R01ES021801, P42ES031007)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic Mapping and Diversity in Plants and Animals
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic Associations and Epidemiology
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic and phenotypic traits in livestock
Keywords
cystatin C, genetic architecture, Diversity Outbred mice, quantitative trait loci, expression quantitative trait loci, kidney gene expression, type I interferon signaling, immune-related genes, chronic kidney disease biomarkers, glomerular filtration rate, gene co-expression network, CST3
MeSH terms
Collaborative Cross Mice, Animals, Female, Biomarkers, Quantitative Trait Loci, Mice, Cystatin C

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