The DOI matches its Crossref record; 6 of the 6 references it cites were found in a registry or an index.
Bayesian Clustering Using Hidden Markov Random Fields in Spatial Population Genetics
Open accessAbstract
We introduce a new Bayesian clustering algorithm for studying population structure using individually geo-referenced multilocus data sets. The algorithm is based on the concept of hidden Markov random field, which models the spatial dependencies at the cluster membership level. We argue that (i) a Markov chain Monte Carlo procedure can implement the algorithm efficiently, (ii) it can detect significant geographical discontinuities in allele frequencies and regulate the number of clusters, (iii) it can check whether the clusters obtained without the use of spatial priors are robust to the hypothesis of discontinuous geographical variation in allele frequencies, and (iv) it can reduce the number of loci required to obtain accurate assignments. We illustrate and discuss the implementation issues with the Scandinavian brown bear and the human CEPH diversity panel data set.
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“A field study and a subsequent analysis by Coulon et al. (2006) also support these observations.”
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Cited by
Inferring weak population structure with the assistance of sample group information
HUBISZ, M. J., FALUSH, D., STEPHENS, M., & PRITCHARD, J. K. (2009) · Molecular Ecology Resources · doi:10.1111/j.1755-0998.2009.02591.x · Cited by 3,475
The Genetic Structure and History of Africans and African Americans
Tishkoff, S. A., Reed, F. A., Friedlaender, F. R., Ehret, C., Ranciaro, A., Froment, A., Hirbo, J. B., Awomoyi, A. A., Bodo, J.-M., Doumbo, O., et al. (2009) · Science · doi:10.1126/science.1172257 · Cited by 1,573
Global patterns and predictors of tropical reef fish species richness
Parravicini, V., Kulbicki, M., Bellwood, D. R., Friedlander, A. M., Arias‐Gonzalez, J. E., Chabanet, P., Floeter, S. R., Myers, R., Vigliola, L., D’Agata, S., et al. (2013) · Ecography · doi:10.1111/j.1600-0587.2013.00291.x · Cited by 186
Population persistence of California Current fishes and benthic crustaceans: a marine drift paradox
Shanks, A. L., & Eckert, G. L. (2005) · Ecological Monographs · doi:10.1890/05-0309 · Cited by 172
Scale dependent inference in landscape genetics
Cushman, S. A., & Landguth, E. L. (2010) · Landscape Ecology · doi:10.1007/s10980-010-9467-0 · Cited by 162
Ecologically relevant dispersal of corals on isolated reefs: implications for managing resilience
Underwood, J. N., Smith, L. D., Oppen, M. J. H. V., & Gilmour, J. P. (2009) · Ecological Applications · doi:10.1890/07-1461.1 · Cited by 157
Larval quality is shaped by matrix effects: Implications for connectivity in a marine metapopulation
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The Gradient Paradigm: A Conceptual and Analytical Framework for Landscape Ecology
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Caputo, B., Nwakanma, D., Caputo, F. P., Jawara, M., Oriero, E. C., Hamid‐Adiamoh, M., Dia, I., Konate, L., Petrarca, V., Pinto, J., et al. (2014) · Molecular Ecology · doi:10.1111/mec.12866 · Cited by 32
Basto, M. P., Santos-Reis, M., Simões, L., Grilo, C., Cardoso, L., Cortes, H., Bruford, M. W., & Fernandes, C. (2016) · PLOS ONE · doi:10.1371/journal.pone.0145165 · Cited by 28
Metadata
- Authors
- François, O., Ancelet, S., & Guillot, G.
- Venue
- Genetics
- Publisher
- Oxford University Press (OUP)
- Published
- 2006-10-01
- Volume
- 174
- Issue
- 2
- Pages
- 805-816
- ISSN
- 0016-6731 (ISSN-L)
- 1943-2631
- OpenAlex
- W2113662295
- Cited by
- 348
- References
- 6
- FWCI
- 14.67
- Type
- journal article
- Language
- en
- Open access
- bronze
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
