Cited by 104Chromosomal and Genetic VariationsGenetic Mapping and Diversity in Plants and AnimalsGenomic variations and chromosomal abnormalities

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Megabase-Scale Inversion Polymorphism in the Wild Ancestor of Maize

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Fang, Zhou, Pyhäjärvi, Tanja, Weber, Allison L, Dawe, R Kelly, Glaubitz, Jeffrey C, González, José de Jesus Sánchez, Ross-Ibarra, Claudia, Doebley, John, Morrell, Peter L, Ross-Ibarra, Jeffrey·2012·Genetics

DOI 10.1534/genetics.112.138578PMC PMC3389981

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Abstract

Chromosomal inversions are thought to play a special role in local adaptation, through dramatic suppression of recombination, which favors the maintenance of locally adapted alleles. However, relatively few inversions have been characterized in population genomic data. On the basis of single-nucleotide polymorphism (SNP) genotyping across a large panel of Zea mays, we have identified an ∼50-Mb region on the short arm of chromosome 1 where patterns of polymorphism are highly consistent with a polymorphic paracentric inversion that captures >700 genes. Comparison to other taxa in Zea and Tripsacum suggests that the derived, inverted state is present only in the wild Z. mays subspecies parviglumis and mexicana and is completely absent in domesticated maize. Patterns of polymorphism suggest that the inversion is ancient and geographically widespread in parviglumis. Cytological screens find little evidence for inversion loops, suggesting that inversion heterozygotes may suffer few crossover-induced fitness consequences. The inversion polymorphism shows evidence of adaptive evolution, including a strong altitudinal cline, a statistical association with environmental variables and phenotypic traits, and a skewed haplotype frequency spectrum for inverted alleles.

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Authors: Fang, Z., Pyhäjärvi, T., Weber, A. L., Dawe, R. K., Glaubitz, J. C., González, J. D. J. S., Ross-Ibarra, C., Doebley, J., Morrell, P. L., & Ross-Ibarra, J.
Affiliations: University of Minnesota (US)
University of California, Davis (US)
University of Wisconsin–Madison (US)
University of Georgia (US)
Cornell University (US)
Centro Universitario de Ciencias Biológicas y Agropecuarias, Universidad de Guadalajara, Zapopan, Jalisco, Mexico CP45110
Department of Plant Sciences and
ORCID: Pyhäjärvi, Tanja
Dawe, R Kelly
Doebley, John
Morrell, Peter L
Venue: Genetics
Publisher: Oxford University Press (OUP)
Published: 2012-07-01
Volume: 191
Issue: 3
Pages: 883-894
ISSN: 0016-6731 (ISSN-L)
1943-2631
DOI: 10.1534/genetics.112.138578
PMC: PMC3389981
OpenAlex: W2125064018
Cited by: 104
References: 90
Citations by year: 2026: 3 · 2025: 8 · 2024: 6 · 2023: 4 · 2022: 7 · 2021: 8 · 2020: 12 · 2019: 13 · 2018: 5 · 2017: 7 · 2016: 8 · 2015: 8 · 2014: 7 · 2013: 6 · 2012: 2
FWCI: 8.41
Type: journal article
Language: en
Open access: green
europepmc.org
Licence: academic.oup.com/journals/pages/open_access/funder_policies/chorus/standard_publication_model (vor)
Locations: Genetics (publishedVersion)
Europe PMC (PubMed Central) (publishedVersion)
PubMed Central (publishedVersion)
PubMed (publishedVersion)
Funders: University of Minnesota
Division of Integrative Organismal Systems
Topics: Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Chromosomal and Genetic Variations
Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic Mapping and Diversity in Plants and Animals
Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genomic variations and chromosomal abnormalities
Keywords: chromosomal inversions, paracentric inversion, maize, Tripsacum, single nucleotide polymorphisms, chromosome 1, recombination suppression, local adaptation, altitudinal cline, adaptive evolution, inversion heterozygotes, domestication
MeSH terms: Alleles, Zea mays, Haplotypes, Chromosome Inversion, Polymorphism, Genetic, Time Factors, Evolution, Molecular, Polymorphism, Single Nucleotide, Chromosomes, Plant

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Megabase-Scale Inversion Polymorphism in the Wild Ancestor of Maize

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