Cited by 2Essential Oils and Antimicrobial ActivityTraditional Chinese Medicine AnalysisSpectroscopy and Chemometric Analyses

Untargeted metabolomics and targeted approach of essential oils to differentiate five Ocimum species using gas chromatography coupled with mass spectrometry

Open access
Jaiswal, Ravi Prakash, Pasrija, Anubhuti, Mishra, Baidyanath, Gupta, Pankaj Kumar, Mitra, Ranjan·2024·The Journal of Phytopharmacology

Abstract

The chemical profile of essential oils (EOs) obtained from Ocimum species can be used to identify species and assess the potential applications for them. Some kinds of basil (Ocimum L.) are used as medicinal herbs because of the distinct biological activity of their essential oils. The goal of this study was to use chemometrics to distinguish between five closely related species of Ocimum, viz., O. basilicum Linn., O. canum Sims., O. citriodorum, O. gratissimum Linn. and O. sanctum Linn. to distinguish between different volatile organic compounds (VOCs) based on their EOs. Through the use of gas chromatography-mass spectrometry (GC-MS) operated under screening mode to determine the compositions of the EOs, total 119 metabolites were found. The VOC composition of the investigated species allowed for distinct differentiation, as demonstrated by untargeted metabolomics and multivariate analysis using Principal Component Analysis (PCA) and Hierarchical Clustering Analysis (HCA). Simultaneously using GC-MS selected ion monitoring (SIM) method was established for the simultaneous four major components like Linalool, Caryophyllene, Estragole and Eugenol of quantitative estimation in five different Ocimum species, as well as providing methodological reference for quality control. Based on chromatographic data, Principal Component Analysis (PCA) and Hierarchical Clustering Analysis (HCA) heat map experimental design were able to successfully distinguish between the five related species. The content was detected in varying proportions between batches of the same species, according to quantitative evaluation i.e., (i) Three different of batches Ocimum basilicum Linn., Estragole was 52.9 %w/w as higher content, Linalool 18.19 %w/w, Caryophyllene 0.3 %w/w, and Eugenol were not detected, (ii) Three different of batches Ocimum canum Sims., Linalool was founds as > 70.82 %w/w as higher content, Caryophyllene 3.41 %w/w, Eugenol 0.8 %w/w and Estragole were not detected in all three different batches, (iii) Three different of batches Ocimum citriodorum., Caryophyllene was found around 34.36 %w/w, Linalool 6.29 %w/w; Eugenol 10.64 %w/w and Estragole were not detected in all three different batches, (iv) Ocimum gratissimum Linn., in three different of batches, Eugenol was found in high content up to 65.77 %w/w, Linalool 1.77 %w/w respectively, Caryophyllene 10.8 %w/w and Estragole not detected in all three different batches, (v) Ocimum sanctum Linn., Eugenol were in high content at 57.21 %w/w, Caryophyllene up to 19.85 %w/w, Linalool and Estragole both were not detected in all three different batches; this could be because of the species nature and the varying climatic circumstances. Ocimum essential oil is a potent antibacterial, antioxidant, repellent, insecticidal, larvicidal, nematocidal, and therapeutic agent (anti-inflammatory, antinociceptive, antipyretic, analgesic, immunomodulatory, etc.) with a vast range of biological action.

AI snapshot

Written from the paper’s full text.

TL;DR

This study combined targeted GC-MS selected-ion monitoring with untargeted profiling to compare essential oils from five Ocimum species and identify species-specific marker compounds. PCA and HCA separated the oils, with estragole, linalool, caryophyllene, and eugenol dominating different species.

Key findings

  • Targeted GC-MS quantified four compounds across three batches per species. O. basilicum was estragole-rich (51.03–54.88% w/w), with linalool at 17.63–18.96% and caryophyllene at 0.29–0.3%; eugenol was not detected. O. canum was linalool-rich (70.05–71.97%), with caryophyllene at 3.36–3.45% and eugenol at 0.77–0.81%; estragole was not detected. O. citriodorum had caryophyllene at 33.32–35.28%, linalool at 6.11–6.44%, and eugenol at 10.31–10.94%; estragole was not detected. O. gratissimum had eugenol at 63.92–67.09%, caryophyllene at 10.54–11.0%, and linalool at 1.73–1.80%; estragole was not detected. O. sanctum had eugenol at 56.13–58.16% and caryophyllene at 19.48–20.22%; linalool and estragole were not detected.
  • Untargeted GC-MS profiling reported many volatiles; the abstract states 119 metabolites, while the results and discussion mention 150 volatile constituents and 119 selected compounds for HCA. Commonly noted compounds included α-pinene, D-limonene, linalool oxides, linalool, estragole, eugenol, methyleugenol, caryophyllene, aromandendrene, α-humulene, δ-cadinene, caryophyllene oxide, and acetyl eugenol.
  • PCA of 150 selected volatiles showed the first three components explaining about 80% of variance (36.4%, 27.57%, and 15.54%), separating O. citriodorum from the other four species. HCA of 119 compounds grouped the oils into five clusters at a cut-off of 0.05.
  • Calibration performance for the four targeted analytes showed R² values of 0.998–0.999, LODs of 0.00012–0.00015 mg/ml, and LOQs of 0.00035–0.00045 mg/ml.

Methods

  • Essential oils from O. basilicum, O. canum, O. citriodorum, O. gratissimum, and O. sanctum were supplied by Dabur Research and Development Centre, extracted from aerial parts by hydrodistillation in a Clevenger apparatus for 3 hours, and dried over anhydrous sodium sulfate.
  • Quantification used GC-MS in selected ion monitoring mode with a VF-Wax MS column and standards for linalool, caryophyllene, estragole, and eugenol; method performance was assessed with linearity, LOD, and LOQ following ICH and SANTE criteria. Untargeted profiling used an HP-5MS UI column in full-scan mode, with retention indices against C7–C30 alkanes and spectral matching to Wiley/NIST libraries.
  • Statistical differentiation used PCA and HCA in Mass Profiler Professional, based on three batches per species.

Limitations

  • The paper does not state a limitations section.
  • Evident from the text: only three batches per species were analyzed, and all oils came from a single supplier/inventory, so source and batch variability may be under-sampled; the text attributes variation to species and climatic conditions but provides no environmental or agronomic metadata.
  • Evident from the provided text: metabolite counts are inconsistent (119 versus 150), and Table 4 contains no data rows, limiting assessment of the full comparative untargeted composition.

Model-written summary. Check it against the paper before relying on it.

Integrity signals

Registry

Crossref · 10.31254/phyto.2024.13602

Cites

0 citation errors · 0 not checkable

Statistics

Nothing to recompute.

Claims the paper makes

4 of 13 cited sources checked · 0 supported · 0 flagged · accuracy not yet measured

  • Findingown data

    O. gratissimum oil contained Caryophyllene at 17.69-18.61%.

    “followed by major sesquiterpene as Caryophyllene (17.69-18.61%) was identified”
    Quote in the paperNot a substantial claim
  • Findingown data

    In O. citriodorum, Caryophyllene was detected at 33.32, 34.49, and 35.28 %w/w across three batches.

    “(iii) Three different of batches Ocimum citriodorum., Linalool (6.11, 6.32, 6.44 %w/w respectively); Caryophyllene (33.32, 34.49, 35.28 %w/w respectively); Eugenol (10.31, 10.68, 10.94 %w/w respectively) and Estragole were not detected in all three different batches”
    Quote in the paperSubstantial claim
  • Findingown data

    In O. sanctum, Eugenol was detected at 57.36, 56.13, and 58.16 %w/w across three batches.

    “(v) Ocimum sanctum Linn., Caryophyllene (19.87, 19.48, 20.22 %w/w respectively); Eugenol (57.36, 56.13, 58.16 %w/w respectively), Linalool and Estragole both were not detected in all three different batches”
    Quote in the paperSubstantial claim
  • Findingown data

    The content of Linalool, Caryophyllene, Estragole, and Eugenol varied between batches of the same Ocimum species.

    “The content was detected in varying proportions between batches of the same species, according to quantitative evaluation”
    Quote in the paperNot a substantial claim
  • Findingown data

    A total of twenty-six volatile compounds were identified in the essential oil of O. sanctum.

    “A total of twenty-six volatile compounds were identified in the essential oil of O. sanctum, as illustrated in Figure 3.”
    Quote in the paperNot a substantial claim
  • Classified as probably not a substantial claim. 7
  • May combine two claims. 10
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Eugenol is widely known for its healing properties, including antimicrobial and anti-inflammatory effects.

    “Eugenol is widely known for its healing properties, consisting of antimicrobial and anti-inflammatory effects [22,23,24] .”
    Quote in the paperNot a substantial claim1 of 3 sources checked
    • cites [22] 22. Asha MK, Prashanth D, Murali B, Padmaja R, Amit A. Anthelmintic activity of essential oil of Ocimum sanctum and eugenol. Fitoterapia. 2001 Aug 1;72(6):669-70. source
    • cites [23] 23. Tomar H, Rawat A, Nagarkoti K, Prakash O, Kumar R, Srivastava RM, Rawat S, Rawat DS. Ocimum gratissimum L. and Ocimum sanctum L.: Comparative compositional analysis of essential oils and in-vitro biological activities with in-silico PASS prediction and ADME/Tox studies. South African Journal of Botany. 2023 Jun 1; 157:360-71. source
    • cites [24] 24. Melo, R.S., Albuquerque Azevedo, Á.M., Gomes Pereira, A.M., Rocha, R.R., Bastos Cavalcante, R.M., Carneiro Matos, M.N., Ribeiro Lopes, P.H., Gomes, G.A., Soares Rodrigues, T.H., Santos, H.S.D. and Ponte, I.L., 2019. Chemical composition and antimicrobial effectiveness of Ocimum gratissimum L. essential oil against multidrug- resistant isolates of Staphylococcus aureus and Escherichia coli. Molecules, 24(21), p.3864. source

      The Discussion reports that eugenol-rich essential oil reduced biofilm biomass and viable cells in multidrug-resistant S. aureus and E. coli, supporting the antimicrobial part. No passage in our copy establishes an anti-inflammatory effect of eugenol or the broader claim about its healing properties (searched: anti-inflammatory, inflammation). Page numbers were not provided. (LLM, conf=0.87)

      Experimental — accuracy not yet measured
  • Classified as probably not a substantial claim.

    Premisecitation

    PCA and HCA are valuable statistical techniques for deriving insights from intricate datasets with many variables, such as volatile compounds in Ocimum oils.

    “Principal Component Analysis (PCA) and Hierarchical Clustering Analysis (HCA) are valuable statistical techniques employed to derive insights from intricate datasets, particularly when managing a substantial number of variables, such as the volatile compounds present in Ocimum oils [29] .”
    Quote in the paperSubstantial claim1 of 1 sources checked
    • cites [29] 29. Tangpao T, Chung HH, Sommano SR. Aromatic profiles of essential oils from five commonly used Thai basils. Foods. 2018 Oct 24;7(11):175. source

      Section 2.6 (page not provided) says PCA was used to summarize differences in volatile components among Ocimum essential oils, and Section 3.2 reports that it revealed groups distinguished by aromatic compounds. The paper does not report using HCA or establish its value for these data; the reference to clustering describes a PCA result, not hierarchical clustering. (LLM, conf=0.88)

      Experimental — accuracy not yet measured
  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Premisecitation

    Linalool is famed for its soothing and floral aroma and is used in the perfume and beauty industries.

    “Linalool, famed for its soothing and floral aroma, discover packages withinside the perfume and beauty industries [25,26] .”
    Quote in the paperNot a substantial claim2 of 2 sources checked
    • cites [25] 25. Sharmeen JB, Mahomoodally FM, Zengin G, Maggi F. Essential oils as natural sources of fragrance compounds for cosmetics and cosmeceuticals. Molecules. 2021 Jan 27;26(3):666. source

      The Abstract identifies linalool as a fragrance component used in cosmetics, and section 4, “Chemistry of Essential Oils,” says it is widely used in the perfume industry. Neither passage describes linalool’s aroma as soothing or floral. (LLM, conf=0.86)

      Experimental — accuracy not yet measured
    • cites [26] 26. Selvi MT, Thirugnanasampandan R, Sundarammal S. Antioxidant and cytotoxic activities of essential oil of Ocimum canum Sims. from India. Journal of Saudi Chemical Society. 2015 Jan 1;19(1):97-100. source

      The Chemical composition analysis (section 3.1) describes aromatic Ocimum canum oil, but does not discuss linalool’s scent or its use in perfume or beauty products. Searches for linalool, floral fragrance, perfumery, and cosmetic uses found no passage addressing those claims in our copy. (LLM, conf=0.75)

      Experimental — accuracy not yet measured
  • May combine two claims.

    Findingown data

    In O. basilicum oil, phenylpropanoids were the primary components, with Estragole accounting for 49.49-61.05% of the oil.

    “The analysis indicated that phenylpropanoids were the primary components, with Estragole accounting for 49.49-61.05% of the oil.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingcitation

    O. citriodorum provides a chemical profile proposing phenylpropanoids, with Caryophyllene as a standout compound.

    “O. citriodorum provides a chemical profile proposing phenylpropanoids, with Caryophyllene as a standout compound”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingcitation

    O. basilicum distinguishes itself through a wealthy array of phenylpropanoids, with the dominant compound Estragole.

    “O. basilicum distinguishes itself through its wealthy array of phenylpropanoids, drastically proposing the dominant compound Estragole”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    O. canum essential oil contained other significant compounds including α-Pinene (1.59-1.61%), D-Limonene (3.05-3.3%), (E)-Linalool oxide A (1.94-2.06%), Eugenol (1.15-1.39%), Methyleugenol (2.92-2.94%), and α-Bisabolene (4.53-5.22%).

    “Other significant compounds included α-Pinene (1.59-1.61%),D-Limonene (3.05-3.3%),(E)-Linalool oxide A (1.94-2.06%),Eugenol (1.15-1.39%),Methyleugenol (2.92-2.94%),and α-Bisabolene (4.53-5.22%).”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    O. sanctum oil contained other compounds in notable quantities including Eucalyptol (1.01-1.05%), Citronellol (0.88-0.97%), Copaene (0.89-0.93%), α-Humulene (6.91-6.97%), and δ-Cadinene (1.43-1.5%).

    “Additionally, other compounds present in notable quantities included Eucalyptol (1.01-1.05%),Citronellol (0.88-0.97%),Copaene (0.89-0.93%), α-Humulene (6.91-6.97%),and δ-Cadinene (1.43-1.5%).”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    The untargeted PCA model clearly differentiated the Ocimum species of basil oils and showed the percentage variation of the major molecules.

    “Based on the untargeted approach using the PCA model we were able to clearly differentiate the Ocimum species of basil oils and showed the percentage variation of the major molecules.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingnone given

    O. canum is predominantly described through its monoterpene hydrocarbons, with Linalool taking the lead.

    “Meanwhile, O. canum is predominantly described through its monoterpene hydrocarbons, with Linalool taking the lead.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Premisecitation

    The essential oil constituents chosen for quantitative analysis were selected due to their scientific significance and pharmacological properties, identified as the predominant active volatile compounds in specific Ocimum species.

    “The essential oil constituents chosen for quantitative analysis were selected due to their scientific significance and pharmacological properties, identified as the predominant active volatile compounds in specific Ocimum species [1,14,15] .”
    Quote in the paperSubstantial claim0 of 3 sources checked
    • cites [1] 1. Pandey AK, Singh P, Tripathi NN. Chemistry and bioactivities of essential oils of some Ocimum species: an overview. Asian Pacific Journal of Tropical Biomedicine. 2014;4(9):682-94. source
    • cites [14] 14. Raina AP, Misra RC. Chemo-divergence in essential oil composition among germplasm collection of five Ocimum species from eastern coastal plains of India. Journal of Essential oil Research. 2018 Jan 2;30(1):47-55. source
    • cites [15] 15. Verma S. Chemical constituents and pharmacological action of Ocimum sanctum (Indian holy basil-Tulsi). The Journal of Phytopharmacology. 2016;5(5):205-7.

      Couldn’t be matched to a paper in Crossref, so it can’t be checked.

  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Interpretationcitation

    The Caryophyllene content in O. citriodorum oil (17.87-17.93%) was higher than previously reported for this species.

    “Major Caryophyllene content found in the range of 17.87-17.93% in O. Citriodorum oil which was on the higher side as compared to the previous literature report on this species [14].”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites [14] 14. Raina AP, Misra RC. Chemo-divergence in essential oil composition among germplasm collection of five Ocimum species from eastern coastal plains of India. Journal of Essential oil Research. 2018 Jan 2;30(1):47-55. source
  • May combine two claims.

    Study design and conductnone given

    The analytical method was developed in accordance with ICH guidelines, addressing calibration parameters, specificity, sensitivity, and LOD/LOQ determined via a signal-to-noise ratio approach.

    “The analytical method was developed in accordance with ICH guidelines, addressing calibration parameters such as linear range, correlation coefficient (R²), slope, and interface, as well as specificity, sensitivity, and limits of detection and quantification (LOD and LOQ), determined via a signal-to-noise ratio approach.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductcitation

    The mass selection criteria for identification and quantification using GC-MS were guided by the SANTE 11312/2021 framework.

    “The mass selection criteria for identification and quantification using GC-MS were guided by the SANTE 11312/2021 [16] framework (Fig. 1).”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites [16] 16. European Commission. Method Validation and Quality Control Procedures for Pesticide Residues Analysis in Food and Feed; Document N• SANTE/11312/2021; European Commission: Brussels, Belgium, 2021.

      Couldn’t be matched to a paper in Crossref, so it can’t be checked.

  • Classified as probably not a substantial claim.

    Study design and conductcitation

    Compounds were identified by comparison of their retention indices and mass spectra with those of authentic compounds or with databases retention index, using the HP-5MS column and literature retention indices.

    “Compounds were identified by comparison of their Retention indices (RI) and mass spectra with those of authentic compounds or with databases retention index, RI Exp.indicates retention indices determined on the HP-5MS column, RI Lit.indicates retention indices from literature (Raina et al., 2017) and NIST Library.”
    Quote in the paperSubstantial claim0 of 1 sources checked
    • cites Raina et al., 2017

      Couldn’t be matched to a paper in Crossref, so it can’t be checked.

  • Probably not a substantial claim: may not pass S2 (checkable).

    Interpretationown data

    The variability in chemical properties identified in this study underscores the necessity for precise botanical identification and an understanding of the plant's origin utilized in traditional medicine.

    “The variability in the chemical properties identified in this study underscores the necessity for precise botanical identification and an understanding of the plant's origin utilized in traditional medicine.”
    Quote in the paperNot a substantial claim
    • Rests on an assumption: The chemical profiles obtained from the analyzed samples are representative of the respective Ocimum species and are not substantially influenced by environmental or processing factors.
16 of 16
  • The paper relies on this without support.

    The five Ocimum species studied (O. basilicum, O. canum, O. citriodorum, O. gratissimum, and O. sanctum) are closely related.

    “The goal of this study was to use chemometrics to distinguish between five closely related species of Ocimum, viz., O. basilicum Linn., O. canum Sims., O. citriodorum, O. gratissimum Linn.and O. sanctum Linn.”
  • The paper relies on this without support.

    The chemical profiles obtained from the analyzed samples are representative of the respective Ocimum species and are not substantially influenced by environmental or processing factors.

    “The variability in the chemical properties identified in this study underscores the necessity for precise botanical identification and an understanding of the plant's origin utilized in traditional medicine.”
2 of 2

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

Each contradiction between two passages listed here was confirmed by an independent check.

  • The reported total of volatile compounds changes from 119 to 150

    Major

    The abstract reports 119 metabolites from GC-MS screening, while the results report 150 volatile constituents in the oils. Both are presented as totals for the study's chemical profiling.

  • Constituents said to occur in every variety exceed one variety's entire profile

    Minor

    The results say that 150 constituents occur in all five varieties, but later identify only 21 compounds in O. gratissimum. Both statements cannot describe the same species profiles.

2 of 2

Cites

The publisher hasn’t deposited this paper’s reference list.

Research works printed but not linked: 5

  1. [15]15. Verma S. Chemical constituents and pharmacological action of Ocimum sanctum (Indian holy basil-Tulsi). The Journal of Phytopharmacology. 2016;5(5):205-7.
  2. [30]30. Tangpao T, Chung HH, Sommano SR. Aromatic profiles of essential oils from five commonly used Thai basils. Foods. 2018 Oct 24;7(11):175.
  3. [31]31. Khosla MK, Aggarwal SG, Kaul MK. Biogenesis of essential oil of Clocimum (Ocimum gratissimum Linn.). Indian Perfumer. 2005; 49:67-71.
  4. [32]32. Lawrence BM. Progress in essential oils. Perfumer and Flavorist. 2000 Aug 2;25(1):33-.
  5. [36]36. Vieira RF, Simon JE. Chemical characterization of basil (Ocimum spp.) based on volatile oils. Flavour and Fragrance Journal. 2006 Mar;21(2):214-21.

Cited by

Sorted by citations

Authors
Jaiswal, R. P., Pasrija, A., Mishra, B., Gupta, P. K., & Mitra, R.
Affiliations
Dabur (India) (IN)
Venue
The Journal of Phytopharmacology
Published
2024-12-31
Volume
13
Issue
6
Pages
424-436
ISSN
2320-480X (ISSN-L)
OpenAlex
W4406297455
Cited by
2
References
0
Citations by year
2026: 1 · 2025: 1
FWCI
0.43
Type
journal article
Language
en
Open access
Locations
The Journal of Phytopharmacology (publishedVersion)
Topics
  • Life Sciences › Agricultural and Biological Sciences › Food Science › Essential Oils and Antimicrobial Activity
  • Health Sciences › Medicine › Complementary and alternative medicine › Traditional Chinese Medicine Analysis
  • Physical Sciences › Chemistry › Analytical Chemistry › Spectroscopy and Chemometric Analyses
Keywords
Ocimum basilicum, Ocimum canum, Ocimum gratissimum, Ocimum sanctum, volatile organic compounds, linalool, caryophyllene, estragole, eugenol, selected ion monitoring, chemometrics, species identification, quality control, medicinal plants, batch-to-batch variation

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