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Cited by 609Antibiotic Use and ResistanceAntibiotic Resistance in BacteriaZoonotic diseases and public health

Antibiotic Resistance: One Health One World Outlook

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Aslam, Bilal, Khurshid, Mohsin, Arshad, Muhammad Imran, Muzammil, Saima, Rasool, Maria, Yasmeen, Nafeesa, Shah, Taif, Chaudhry, Tamoor Hamid +4 more·2021·Frontiers in Cellular and Infection Microbiology
DOI 10.3389/fcimb.2021.771510PMC PMC8656695
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Abstract

Antibiotic resistance (ABR) is a growing public health concern worldwide, and it is now regarded as a critical One Health issue. One Health's interconnected domains contribute to the emergence, evolution, and spread of antibiotic-resistant microorganisms on a local and global scale, which is a significant risk factor for global health. The persistence and spread of resistant microbial species, and the association of determinants at the human-animal-environment interface can alter microbial genomes, resulting in resistant superbugs in various niches. ABR is motivated by a well-established link between three domains: human, animal, and environmental health. As a result, addressing ABR through the One Health approach makes sense. Several countries have implemented national action plans based on the One Health approach to combat antibiotic-resistant microbes, following the Tripartite's Commitment Food and Agriculture Organization (FAO)-World Organization for Animal Health (OIE)-World Health Organization (WHO) guidelines. The ABR has been identified as a global health concern, and efforts are being made to mitigate this global health threat. To summarize, global interdisciplinary and unified approaches based on One Health principles are required to limit the ABR dissemination cycle, raise awareness and education about antibiotic use, and promote policy, advocacy, and antimicrobial stewardship.

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  • The One Health concept considers humans, animals, the environment, and the food chain as interconnected entities, owing to which resistance genes can be transferred from environmental bacteria to human pathogens.

    “This concept considers humans, animals, the environment, and the food chain as interconnected entities, owing to which resistance genes can be transferred from environmental bacteria to human pathogens [13].”

    From A Systematic Review on Antimicrobial Resistance in Ghana from a One Health Perspective (2024) · cites this paper as [13]

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  1. Aarestrup F. M. Seyfarth A. M. Emborg H. D. Pedersen K. Hendriksen R. S. Bager F. (2001). Effect of Abolishment of the Use of Antimicrobial Agents for Growth Promotion on Occurrence of Antimicrobial Resistance in Fecal Enterococci From Food Animals in Denmark. Antimicrob. Agents Chemother. 45 (7), 2054– 2059. doi: 10.1128/AAC.45.7.2054-2059.2001 11408222 PMC90599 · DOI
  2. Aarestrup F. M. Wegener H. C. Collignon P. (2008). Resistance in Bacteria of the Food Chain: Epidemiology and Control Strategies. Expert Rev. Anti Infect. Ther. 6 (5), 733– 750. doi: 10.1586/14787210.6.5.733 18847409 · DOI · Paper page
  3. Agramont J. Gutiérrez-Cortez S. Joffré E. Sjöling Å. Calderon Toledo C. (2020). Fecal Pollution Drives Antibiotic Resistance and Class 1 Integron Abundance in Aquatic Environments of the Bolivian Andes Impacted by Mining and Wastewater. Microorganisms 8 (8), 1122. doi: 10.3390/microorganisms8081122 32722600 PMC7464395 · DOI
  4. Aires-de-Sousa M. (2017). Methicillin-Resistant Staphylococcus Aureus Among Animals: Current Overview. Clin. Microbiol. Infect. 23 (6), 373– 380. doi: 10.1016/j.cmi.2016.11.002 27851997 · DOI
  5. Almeida G. M. F. Mäkelä K. Laanto E. Pulkkinen J. Vielma J. Sundberg L. R. (2019). The Fate of Bacteriophages in Recirculating Aquaculture Systems (RAS)-Towards Developing Phage Therapy for RAS. Antibiotics (Basel Switzerland) 8 (4), 192. doi: 10.3390/antibiotics8040192 31652887 PMC6963195 · DOI
  6. Al-Shahrani S. Naidoo V. (2015). Florfenicol Induces Early Embryonic Death in Eggs Collected From Treated Hens. BMC Vet. Res. 11, 213. doi: 10.1186/s12917-015-0536-0 26282556 PMC4538914 · DOI
  7. Angelakis E. (2017). Weight Gain by Gut Microbiota Manipulation in Productive Animals. Microb. Pathog. 106, 162– 170. doi: 10.1016/j.micpath.2016.11.002 27836763 · DOI
  8. Aslam B. Arshad M. I. Aslam M. A. Muzammil S. Siddique A. B. Yasmeen N.. (2021). Bacteriophage Proteome: Insights and Potentials of an Alternate to Antibiotics. Infect. Dis. Ther. 10 (3), 1171– 1193. doi: 10.1007/s40121-021-00446-2 34170506 PMC8322358 · DOI
  9. Aslam B. Wang W. Arshad M. I. Khurshid M. Muzammil S. Rasool M. H.. (2018). Antibiotic Resistance: A Rundown of a Global Crisis. Infect. Drug Resist. 11, 1645– 1658. doi: 10.2147/IDR.S173867 30349322 PMC6188119 · DOI
  10. Auta A. Hadi M. A. Oga E. Adewuyi E. O. Abdu-Aguye S. N. Adeloye D.. (2019). Global Access to Antibiotics Without Prescription in Community Pharmacies: A Systematic Review and Meta-Analysis. J. Infect. 78 (1), 8– 18. doi: 10.1016/j.jinf.2018.07.001 29981773 · DOI
  11. Badau E. (2021). A One Health Perspective on the Issue of the Antibiotic Resistance. Parasite (Paris France) 28, 16. doi: 10.1051/parasite/2021006 33739262 PMC7977273 · DOI
  12. Baer D. Azrad M. Saleh N. Peretz A. (2021). Detection of Carbapenem-Resistant Enterobacterales in Simulated Blood Culture in 15 Minutes. Life (Basel Switzerland) 11 (2), 145. doi: 10.3390/life11020145 33672877 PMC7917675 · DOI
  13. Baker S. Thomson N. Weill F. X. Holt K. E. (2018). Genomic Insights Into the Emergence and Spread of Antimicrobial-Resistant Bacterial Pathogens. Science (New York N.Y.) 360 (6390), 733– 738. doi: 10.1126/science.aar3777 29773743 PMC6510332 · DOI
  14. Banerji A. Jahne M. Herrmann M. Brinkman N. Keely S. (2019). Bringing Community Ecology to Bear on the Issue of Antimicrobial Resistance. Front. Microbiol. 10, 2626. doi: 10.3389/fmicb.2019.02626 31803161 PMC6872637 · DOI
  15. Bank T. W. (2010). People, Pathogens, and Our Planet Towards a One Health Approach for Controlling Zoonotic Diseases Vol. 1 (Washington, DC: The International Bank for Reconstruction and Development/The World Bank).
  16. Bengtsson B. Greko C. (2014). Antibiotic Resistance–Consequences for Animal Health, Welfare, and Food Production. Ups. J. Med. Sci. 119 (2), 96– 102. doi: 10.3109/03009734.2014.901445 24678738 PMC4034566 · DOI
  17. Berkner S. Konradi S. Schönfeld J. (2014). Antibiotic Resistance and the Environment–There and Back Again: Science & Society Series on Science and Drugs. EMBO Rep. 15 (7), 740– 744. doi: 10.15252/embr.201438978 24925529 PMC4196975 · DOI
  18. Blair J. M. Webber M. A. Baylay A. J. Ogbolu D. O. Piddock L. J. (2015). Molecular Mechanisms of Antibiotic Resistance. Nat. Rev. Microbiol. 13 (1), 42– 51. doi: 10.1038/nrmicro3380 25435309 · DOI · Paper page
  19. Bragg L. Tyson G. W. (2014). Metagenomics Using Next-Generation Sequencing. Methods Mol. Biol. (Clifton N.J.) 1096, 183– 201. doi: 10.1007/978-1-62703-712-9_15 24515370 · DOI
  20. Brugman S. Ikeda-Ohtsubo W. Braber S. Folkerts G. Pieterse C. M. J. Bakker P. (2018). A Comparative Review on Microbiota Manipulation: Lessons From Fish, Plants, Livestock, and Human Research. Front. Nutr. 5, 80. doi: 10.3389/fnut.2018.00080 30234124 PMC6134018 · DOI
  21. Burow E. Käsbohrer A. (2017). Risk Factors for Antimicrobial Resistance in Escherichia Coli in Pigs Receiving Oral Antimicrobial Treatment: A Systematic Review. Microb. Drug Resist. (Larchmont N.Y.) 23 (2), 194– 205. doi: 10.1089/mdr.2015.0318 27249658 · DOI
  22. Butcher H. Elson R. Chattaway M. A. Featherstone C. A. Willis C. Jorgensen F.. (2016). Whole Genome Sequencing Improved Case Ascertainment in an Outbreak of Shiga Toxin-Producing Escherichia Coli O157 Associated With Raw Drinking Milk. Epidemiol. Infect. 144 (13), 2812– 2823. doi: 10.1017/S0950268816000509 27338677 PMC9150458 · DOI
  23. Cabrera-Pardo J. R. Lood R. Udekwu K. Gonzalez-Rocha G. Munita J. M. Järhult J. D.. (2019). A One Health - One World Initiative to Control Antibiotic Resistance: A Chile - Sweden Collaboration. One Health (Amsterdam Netherlands) 8, 100100. doi: 10.1016/j.onehlt.2019.100100 31649993 PMC6804674 · DOI
  24. Chang Q. Wang W. Regev-Yochay G. Lipsitch M. Hanage W. P. (2015). Antibiotics in Agriculture and the Risk to Human Health: How Worried Should We be? Evol. Appl. 8 (3), 240– 247. doi: 10.1111/eva.12185 25861382 PMC4380918 · DOI
  25. Cheng G. Ning J. Ahmed S. Huang J. Ullah R. An B.. (2019). Selection and Dissemination of Antimicrobial Resistance in Agri-Food Production. Antimicrob. Resist. Infect. Control 8, 158. doi: 10.1186/s13756-019-0623-2 31649815 PMC6805589 · DOI
  26. Cheng A. C. Turnidge J. Collignon P. Looke D. Barton M. Gottlieb T. (2012). Control of Fluoroquinolone Resistance Through Successful Regulation, Australia. Emerg. Infect. Dis. 18 (9), 1453. doi: 10.3201/eid1809.111515 22932272 PMC3437704 · DOI
  27. Chen K. Pachter L. (2005). Bioinformatics for Whole-Genome Shotgun Sequencing of Microbial Communities. PloS Comput. Biol. 1 (2), 106– 112. doi: 10.1371/journal.pcbi.0010024 16110337 PMC1185649 · DOI
  28. Chin W. Zhong G. Pu Q. Yang C. Lou W. De Sessions P. F.. (2018). A Macromolecular Approach to Eradicate Multidrug Resistant Bacterial Infections While Mitigating Drug Resistance Onset. Nat. Commun. 9 (1), 917. doi: 10.1038/s41467-018-03325-6 29500445 PMC5834525 · DOI
  29. Chistoserdovai L. (2010). Functional Metagenomics: Recent Advances and Future Challenges. Biotechnol. Genet. Eng. Rev. 26, 335– 352. doi: 10.5661/bger-26-335 21415887 · DOI
  30. Chuanchuen R. Karkhoff-Schweizer R. R. Schweizer H. P. (2003). High-Level Triclosan Resistance in Pseudomonas Aeruginosa Is Solely a Result of Efflux. Am. J. Infect. Control 31 (2), 124– 127. doi: 10.1067/mic.2003.11 12665747 · DOI
  31. Cleaveland S. Sharp J. Abela-Ridder B. Allan K. J. Buza J. Crump J. A.. (2017). One Health Contributions Towards More Effective and Equitable Approaches to Health in Low- and Middle-Income Countries. Philos. Trans. R. Soc. B 372 (1725), 20160168. doi: 10.1098/rstb.2016.0168 PMC5468693 28584176 · DOI
  32. Collignon P. (2015). Antibiotic Resistance: Are We All Doomed? Intern. Med. J. 45 (11), 1109– 1115. doi: 10.1111/imj.12902 26563691 · DOI
  33. Collignon P. J. McEwen S. A. (2019). One Health-Its Importance in Helping to Better Control Antimicrobial Resistance. Trop. Med. Infect. Dis. 4 (1), 22. doi: 10.3390/tropicalmed4010022 30700019 PMC6473376 · DOI
  34. Cui Z. Guo X. Dong K. Zhang Y. Li Q. Zhu Y.. (2017). Safety Assessment of Staphylococcus Phages of the Family Myoviridae Based on Complete Genome Sequences. Sci. Rep. 7, 41259. doi: 10.1038/srep41259 28117392 PMC5259776 · DOI
  35. Cycoń M. Mrozik A. Piotrowska-Seget Z. (2019). Antibiotics in the Soil Environment-Degradation and Their Impact on Microbial Activity and Diversity. Front. Microbiol. 10, 338. doi: 10.3389/fmicb.2019.00338 30906284 PMC6418018 · DOI
  36. Dallman T. J. Byrne L. Ashton P. M. Cowley L. A. Perry N. T. Adak G.. (2015). Whole-Genome Sequencing for National Surveillance of Shiga Toxin-Producing Escherichia Coli O157. Clin. Infect. Dis. 61 (3), 305– 312. doi: 10.1093/cid/civ318 25888672 PMC4542925 · DOI
  37. Davies J. Davies D. (2010). Origins and Evolution of Antibiotic Resistance. Microbiol. Mol. Biol. Rev. 74 (3), 417– 433. doi: 10.1128/MMBR.00016-10 20805405 PMC2937522 · DOI · Paper page
  38. Davis M. F. Rankin S. C. Schurer J. M. Cole S. Conti L. Rabinowitz P. (2017). Checklist for One Health Epidemiological Reporting of Evidence (COHERE). One Health (Amsterdam Netherlands) 4, 14– 21. doi: 10.1016/j.onehlt.2017.07.001 28825424 PMC5536878 · DOI
  39. De R. (2019). Metagenomics: Aid to Combat Antimicrobial Resistance in Diarrhea. Gut Pathog. 11, 47. doi: 10.1186/s13099-019-0331-8 31636714 PMC6791012 · DOI
  40. de Abreu V. A. C. Perdigão J. Almeida S. (2020). Metagenomic Approaches to Analyze Antimicrobial Resistance: An Overview. Front. Genet. 11, 575592. doi: 10.3389/fgene.2020.575592 33537056 PMC7848172 · DOI
  41. de Been M. Lanza V. F. de Toro M. Scharringa J. Dohmen W. Du Y.. (2014). Dissemination of Cephalosporin Resistance Genes Between Escherichia Coli Strains From Farm Animals and Humans by Specific Plasmid Lineages. PloS Genet. 10 (12), e1004776. doi: 10.1371/journal.pgen.1004776 25522320 PMC4270446 · DOI
  42. Delahoy M. J. Wodnik B. McAliley L. Penakalapati G. Swarthout J. Freeman M. C.. (2018). Pathogens Transmitted in Animal Feces in Low- and Middle-Income Countries. Int. J. Hyg. Environ. Health 221 (4), 661– 676. doi: 10.1016/j.ijheh.2018.03.005 29729998 PMC6013280 · DOI
  43. Dibner J. J. Richards J. D. (2005). Antibiotic Growth Promoters in Agriculture: History and Mode of Action. Poult. Sci. 84 (4), 634– 643. doi: 10.1093/ps/84.4.634 15844822 · DOI
  44. Done H. Y. Venkatesan A. K. Halden R. U. (2015). Does the Recent Growth of Aquaculture Create Antibiotic Resistance Threats Different From Those Associated With Land Animal Production in Agriculture? AAPS J. 17 (3), 513– 524. doi: 10.1208/s12248-015-9722-z 25700799 PMC4406955 · DOI
  45. Donker T. Wallinga J. Slack R. Grundmann H. (2012). Hospital Networks and the Dispersal of Hospital-Acquired Pathogens by Patient Transfer. PloS One 7 (4), e35002. doi: 10.1371/journal.pone.0035002 22558106 PMC3338821 · DOI
  46. Dowling R. Caravanos J. Grigsby P. Rivera A. Ericson B. Amoyaw-Osei Y.. (2016). Estimating the Prevalence of Toxic Waste Sites in Low- and Middle-Income Countries. Ann. Global Health 82 (5), 700– 710. doi: 10.1016/j.aogh.2016.07.008 28283120 · DOI
  47. Dubuc J. DuTremblay D. Baril J. Bagg R. Brodeur M. Duffield T.. (2010). A Field Study on the Effects of Dietary Monensin on Milk Production and Milk Composition in Dairy Cows. Can. Vet. J. 51 (4), 375– 379. 20592825 PMC2839824
  48. Dumonceaux T. J. Hill J. E. Hemmingsen S. M. Van Kessel A. G. (2006). Characterization of Intestinal Microbiota and Response to Dietary Virginiamycin Supplementation in the Broiler Chicken. Appl. Environ. Microbiol. 72 (4), 2815– 2823. doi: 10.1128/AEM.72.4.2815-2823.2006 16597987 PMC1448984 · DOI
  49. Dutil L. Irwin R. Finley R. Ng L. K. Avery B. Boerlin P.. (2010). Ceftiofur Resistance in Salmonella Enterica Serovar Heidelberg From Chicken Meat and Humans, Canada. Emerg. Infect. Dis. 16 (1), 48. doi: 10.3201/eid1601.090729 20031042 PMC2874360 · DOI
  50. Edwards S. E. Morel C. M. Busse R. Harbarth S. (2018). Combatting Antibiotic Resistance Together: How Can We Enlist the Help of Industry? Antibiotics (Basel Switzerland) 7 (4), 111. doi: 10.3390/antibiotics7040111 30567308 PMC6315850 · DOI
  51. Escobar-Zepeda A. Godoy-Lozano E. E. Raggi L. Segovia L. Merino E. Gutiérrez-Rios R. M.. (2018). Analysis of Sequencing Strategies and Tools for Taxonomic Annotation: Defining Standards for Progressive Metagenomics. Sci. Rep. 8 (1), 12034. doi: 10.1038/s41598-018-30515-5 30104688 PMC6089906 · DOI
  52. Fang L. Li X. Li L. Li S. Liao X. Sun J.. (2016). Co-Spread of Metal and Antibiotic Resistance Within ST3-IncHI2 Plasmids From E. Coli Isolates of Food-Producing Animals. Sci. Rep. 6 (1), 25312. doi: 10.1038/srep25312 27143648 PMC4855149 · DOI
  53. Flandrois J. P. Lina G. Dumitrescu O. (2014). MUBII-TB-DB: A Database of Mutations Associated With Antibiotic Resistance in Mycobacterium Tuberculosis. BMC Bioinformatics 15, 107. doi: 10.1186/1471-2105-15-107 24731071 PMC4021062 · DOI
  54. Florio W. Baldeschi L. Rizzato C. Tavanti A. Ghelardi E. Lupetti A. (2020). Detection of Antibiotic-Resistance by MALDI-TOF Mass Spectrometry: An Expanding Area. Front. Cell. Infect. Microbiol. 10, 572909. doi: 10.3389/fcimb.2020.572909 33262954 PMC7686347 · DOI
  55. Forslund K. Sunagawa S. Kultima J. R. Mende D. R. Arumugam M. Typas A.. (2013). Country-Specific Antibiotic Use Practices Impact the Human Gut Resistome. Genome Res. 23 (7), 1163– 1169. doi: 10.1101/gr.155465.113 23568836 PMC3698509 · DOI
  56. Franklin A. M. Brinkman N. E. Jahne M. A. Keely S. P. (2021). Twenty-First Century Molecular Methods for Analyzing Antimicrobial Resistance in Surface Waters to Support One Health Assessments. J. Microbiol. Methods 184, 106174. doi: 10.1016/j.mimet.2021.106174 33774111 PMC8159016 · DOI
  57. Fuller T. Bensch S. Müller I. Novembre J. Pérez-Tris J. Ricklefs R. E.. (2012). The Ecology of Emerging Infectious Diseases in Migratory Birds: An Assessment of the Role of Climate Change and Priorities for Future Research. EcoHealth 9 (1), 80– 88. doi: 10.1007/s10393-012-0750-1 22366978 · DOI
  58. Fung S. Rempel H. Forgetta V. Dewar E. Diarra M. (2013). “ Ceca Microbiome of Mature Broiler Chickens Fed With or Without Salinomycin,” in The Gut Microbiome: The Effector/Regulatory Immune Network Conference (B3) Keystone Symposia Onmolecular and Cellular Biology, 2013.
  59. Fuzi M. (2016). Dissimilar Fitness Associated With Resistance to Fluoroquinolones Influences Clonal Dynamics of Various Multiresistant Bacteria. Front. Microbiol. 7, 1017. doi: 10.3389/fmicb.2016.01017 27458434 PMC4935693 · DOI
  60. Gaze W. H. Krone S. M. Larsson D. G. Li X. Z. Robinson J. A. Simonet P.. (2013). Influence of Humans on Evolution and Mobilization of Environmental Antibiotic Resistome. Emerg. Infect. Dis. 19 (7), e120871. doi: 10.3201/eid1907.120871 23764294 PMC3713965 · DOI
  61. Ghosh A. K. Paul S. Sood P. Rudramurthy S. M. Rajbanshi A. Jillwin T. J.. (2015). Matrix-Assisted Laser Desorption Ionization Time-of-Flight Mass Spectrometry for the Rapid Identification of Yeasts Causing Bloodstream Infections. Clin. Microbiol. Infect. 21 (4), 372– 378. doi: 10.1016/j.cmi.2014.11.009 25658527 · DOI
  62. Gitaka J. Kamita M. Mureithi D. Ndegwa D. Masika M. Omuse G.. (2020). Combating Antibiotic Resistance Using Guidelines and Enhanced Stewardship in Kenya: A Protocol for an Implementation Science Approach. BMJ Open 10 (3), e030823. doi: 10.1136/bmjopen-2019-030823 PMC7170570 32234736 · DOI
  63. Gouliouris T. Raven K. E. Ludden C. Blane B. Corander J. Horner C. S.. (2018). Genomic Surveillance of Enterococcus Faecium Reveals Limited Sharing of Strains and Resistance Genes Between Livestock and Humans in the United Kingdom. mBio 9 (6), e01780–18. doi: 10.1128/mBio.01780-18 PMC6222123 30401778 · DOI
  64. Gouvêa R. Dos Santos F. De Aquino M. (2015). Fluoroquinolones in Industrial Poultry Production, Bacterial Resistance and Food Residues: A Review. Braz. J. Poult. Sci. 17 (1), 1– 10.
  65. Graham D. W. Collignon P. Davies J. Larsson D. J. Snape J. (2014). Underappreciated Role of Regionally Poor Water Quality on Globally Increasing Antibiotic Resistance (ACS Publications;). 25330712
  66. Granados-Chinchilla F. Rodríguez C. (2017). Tetracyclines in Food and Feedingstuffs: From Regulation to Analytical Methods, Bacterial Resistance, and Environmental and Health Implications. J. Anal. Methods Chem. 2017, 1315497. doi: 10.1155/2017/1315497 28168081 PMC5266830 · DOI
  67. Gray G. C. Merchant J. A. (2018). Pigs, Pathogens, and Public Health. Lancet Infect. Dis. 18 (4), 372– 373. doi: 10.1016/S1473-3099(18)30158-0 29582757 · DOI
  68. Griffiths E. Dooley D. Graham M. Van Domselaar G. Brinkman F. S. L. Hsiao W. W. L. (2017). Context Is Everything: Harmonization of Critical Food Microbiology Descriptors and Metadata for Improved Food Safety and Surveillance. Front. Microbiol. 8, 1068. doi: 10.3389/fmicb.2017.01068 28694792 PMC5483436 · DOI
  69. Guitor A. K. Raphenya A. R. Klunk J. Kuch M. Alcock B. Surette M. G.. (2019). Capturing the Resistome: A Targeted Capture Method To Reveal Antibiotic Resistance Determinants in Metagenomes. Antimicrob. Agents Chemother. 64 (1), e01324–19. doi: 10.1128/AAC.01324-19 PMC7187591 31611361 · DOI
  70. Gurieva T. Dautzenberg M. J. D. Gniadkowski M. Derde L. P. G. Bonten M. J. M. Bootsma M. C. J. (2018). The Transmissibility of Antibiotic-Resistant Enterobacteriaceae in Intensive Care Units. Clin. Infect. Dis. 66 (4), 489– 493. doi: 10.1093/cid/cix825 29020273 PMC5850446 · DOI
  71. Han J. Perez J. T. Chen C. Li Y. Benitez A. Kandasamy M.. (2018). Genome-Wide CRISPR/Cas9 Screen Identifies Host Factors Essential for Influenza Virus Replication. Cell Rep. 23 (2), 596– 607. doi: 10.1016/j.celrep.2018.03.045 29642015 PMC5939577 · DOI
  72. Hao H. Cheng G. Iqbal Z. Ai X. Hussain H. I. Huang L.. (2014). Benefits and Risks of Antimicrobial Use in Food-Producing Animals. Front. Microbiol. 5, 288. doi: 10.3389/fmicb.2014.00288 24971079 PMC4054498 · DOI
  73. Hassell J. M. Begon M. Ward M. J. Fèvre E. M. (2017). Urbanization and Disease Emergence: Dynamics at the Wildlife-Livestock-Human Interface. Trends Ecol. Evol. 32 (1), 55– 67. doi: 10.1016/j.tree.2016.09.012 28029378 PMC5214842 · DOI
  74. Hedman H. D. Vasco K. A. Zhang L. (2020). A Review of Antimicrobial Resistance in Poultry Farming Within Low-Resource Settings. Animals 10 (8), 1264. doi: 10.3390/ani10081264 32722312 PMC7460429 · DOI
  75. Helms M. Simonsen J. Mølbak K. (2004). Quinolone Resistance Is Associated With Increased Risk of Invasive Illness or Death During Infection With Salmonella Serotype Typhimurium. J. Infect. Dis. 190 (9), 1652– 1654. doi: 10.1086/424570 15478071 · DOI
  76. Helms M. Simonsen J. Olsen K. E. Mølbak K. (2005). Adverse Health Events Associated With Antimicrobial Drug Resistance in Campylobacter Species: A Registry-Based Cohort Study. J. Infect. Dis. 191 (7), 1050– 1055. doi: 10.1086/428453 15747238 · DOI
  77. Hendriksen R. S. Munk P. Njage P. van Bunnik B. McNally L. Lukjancenko O.. (2019). Global Monitoring of Antimicrobial Resistance Based on Metagenomics Analyses of Urban Sewage. Nat. Commun. 10 (1), 1124. doi: 10.1038/s41467-019-08853-3 30850636 PMC6408512 · DOI · Paper page
  78. Hernando-Amado S. Coque T. M. Baquero F. Martínez J. L. (2019). Defining and Combating Antibiotic Resistance From One Health and Global Health Perspectives. Nat. Microbiol. 4 (9), 1432– 1442. doi: 10.1038/s41564-019-0503-9 31439928 · DOI
  79. He Y. Yuan Q. Mathieu J. Stadler L. Senehi N. Sun R.. (2020). Antibiotic Resistance Genes From Livestock Waste: Occurrence, Dissemination, and Treatment. NPJ Clean Water 3 (1), 4. doi: 10.1038/s41545-020-0051-0 · DOI
  80. Hoelzer K. Wong N. Thomas J. Talkington K. Jngman E. Coukell A. (2017). Antimicrobial Drug Use in Food-Producing Animals and Associated Human Health Risks: What, and How Strong, Is the Evidence? BMC Vet. Res. 13 (1), 211. doi: 10.1186/s12917-017-1131-3 28676125 PMC5496648 · DOI
  81. Holmes A. H. Moore L. S. Sundsfjord A. Steinbakk M. Regmi S. Karkey A.. (2016). Understanding the Mechanisms and Drivers of Antimicrobial Resistance. Lancet (London England) 387 (10014), 176– 187. doi: 10.1016/S0140-6736(15)00473-0 26603922 · DOI
  82. Hornish R. E. Kotarski S. F. (2002). Cephalosporins in Veterinary Medicine - Ceftiofur Use in Food Animals. Curr. Top. Med. Chem. 2 (7), 717– 731. doi: 10.2174/1568026023393679 12052187 · DOI
  83. Hughes D. Andersson D. I. (2017). Environmental and Genetic Modulation of the Phenotypic Expression of Antibiotic Resistance. FEMS Microbiol. Rev. 41 (3), 374– 391. doi: 10.1093/femsre/fux004 28333270 PMC5435765 · DOI
  84. Huijbers P. M. Blaak H. de Jong M. C. Graat E. A. Vandenbroucke-Grauls C. M. de Roda Husman A. M. (2015). Role of the Environment in the Transmission of Antimicrobial Resistance to Humans: A Review. Environ. Sci. Technol. 49 (20), 11993– 12004. doi: 10.1021/acs.est.5b02566 26355462 · DOI · Paper page
  85. Hung D. T. Shakhnovich E. A. Pierson E. Mekalanos J. J. (2005). Small-Molecule Inhibitor of Vibrio Cholerae Virulence and Intestinal Colonization. Science (New York N.Y.) 310 (5748), 670– 674. doi: 10.1126/science.1116739 16223984 · DOI
  86. Iskandar K. Molinier L. Hallit S. Sartelli M. Catena F. Coccolini F.. (2020). Drivers of Antibiotic Resistance Transmissionin Low- and Middle-Income Countriesfrom a "One Health" Perspective-A Review. Antibiotics (Basel Switzerland) 9 (7), 372. doi: 10.3390/antibiotics9070372 32630353 PMC7400606 · DOI
  87. Jagielski T. Bakuła Z. Roeske K. Kamiński M. Napiórkowska A. Augustynowicz-Kopeć E.. (2014). Detection of Mutations Associated With Isoniazid Resistance in Multidrug-Resistant Mycobacterium Tuberculosis Clinical Isolates. J. Antimicrob. Chemother. 69 (9), 2369– 2375. doi: 10.1093/jac/dku161 24855126 · DOI
  88. Jault P. Leclerc T. Jennes S. Pirnay J. P. Que Y. A. Resch G.. (2019). Efficacy and Tolerability of a Cocktail of Bacteriophages to Treat Burn Wounds Infected by Pseudomonas Aeruginosa (PhagoBurn): A Randomised, Controlled, Double-Blind Phase 1/2 Trial. Lancet Infect. Dis. 19 (1), 35– 45. doi: 10.1016/S1473-3099(18)30482-1 30292481 · DOI
  89. Jutkina J. Marathe N. P. Flach C. F. Larsson D. G. J. (2018). Antibiotics and Common Antibacterial Biocides Stimulate Horizontal Transfer of Resistance at Low Concentrations. Sci. Total Environ. 616-617, 172– 178. doi: 10.1016/j.scitotenv.2017.10.312 29112840 · DOI · Paper page
  90. Kailasa S. K. Koduru J. R. Park T. J. Wu H. F. Lin Y. C. (2019). Progress of Electrospray Ionization and Rapid Evaporative Ionization Mass Spectrometric Techniques for the Broad-Range Identification of Microorganisms. Analyst 144 (4), 1073– 1103. doi: 10.1039/C8AN02034E 30698588 · DOI
  91. Kakoullis L. Papachristodoulou E. Chra P. Panos G. (2021). Mechanisms of Antibiotic Resistance in Important Gram-Positive and Gram-Negative Pathogens and Novel Antibiotic Solutions. Antibiotics (Basel Switzerland) 10 (4), 415. doi: 10.3390/antibiotics10040415 33920199 PMC8069106 · DOI
  92. Keenan J. D. Bailey R. L. West S. K. Arzika A. M. Hart J. Weaver J.. (2018). Azithromycin to Reduce Childhood Mortality in Sub-Saharan Africa. N. Engl. J. Med. 378 (17), 1583– 1592. doi: 10.1056/NEJMoa1715474 29694816 PMC5849140 · DOI
  93. Kim S. J. Chang J. Singh M. (2015). Peptidoglycan Architecture of Gram-Positive Bacteria by Solid-State NMR. Biochim. Biophys. Acta 1848 (1 Pt B), 350– 362. doi: 10.1016/j.bbamem.2014.05.031 24915020 PMC4258515 · DOI
  94. Kirchhelle C. (2018). Pharming Animals: A Global History of Antibiotics in Food Production (1935–2017). Palgrave Commun. 4 (1), 96. doi: 10.1057/s41599-018-0152-2 · DOI
  95. Klemm E. J. Shakoor S. Page A. J. Qamar F. N. Judge K. Saeed D. K.. (2018). Emergence of an Extensively Drug-Resistant Salmonella Enterica Serovar Typhi Clone Harboring a Promiscuous Plasmid Encoding Resistance to Fluoroquinolones and Third-Generation Cephalosporins. mBio 9 (1), e00105–18. doi: 10.1128/mBio.00105-18 PMC5821095 29463654 · DOI
  96. Kraemer S. A. Ramachandran A. Perron G. G. (2019). Antibiotic Pollution in the Environment: From Microbial Ecology to Public Policy. Microorganisms 7 (6), 180. doi: 10.3390/microorganisms7060180 31234491 PMC6616856 · DOI
  97. Lakhundi S. Zhang K. (2018). Methicillin-Resistant Staphylococcus Aureus: Molecular Characterization, Evolution, and Epidemiology. Clin. Microbiol. Rev. 31 (4), e00020–18. doi: 10.1128/CMR.00020-18 PMC6148192 30209034 · DOI
  98. Lam K. N. Cheng J. Engel K. Neufeld J. D. Charles T. C. (2015). Current and Future Resources for Functional Metagenomics. Front. Microbiol. 6, 1196. doi: 10.3389/fmicb.2015.01196 26579102 PMC4625089 · DOI
  99. Landers T. F. Cohen B. Wittum T. E. Larson E. L. (2012). A Review of Antibiotic Use in Food Animals: Perspective, Policy, and Potential. Public Health Rep. (Washington D.C. 1974) 127 (1), 4– 22. doi: 10.1177/003335491212700103 PMC3234384 22298919 · DOI
  100. Lanza V. F. Baquero F. Martínez J. L. Ramos-Ruíz R. González-Zorn B. Andremont A.. (2018). In-Depth Resistome Analysis by Targeted Metagenomics. Microbiome 6 (1), 11. doi: 10.1186/s40168-017-0387-y 29335005 PMC5769438 · DOI
  101. Larsson D. G. J. Andremont A. Bengtsson-Palme J. Brandt K. K. de Roda Husman A. M. Fagerstedt P.. (2018). Critical Knowledge Gaps and Research Needs Related to the Environmental Dimensions of Antibiotic Resistance. Environ. Int. 117, 132– 138. doi: 10.1016/j.envint.2018.04.041 29747082 · DOI
  102. Lau A. F. Wang H. Weingarten R. A. Drake S. K. Suffredini A. F. Garfield M. K.. (2014). A Rapid Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry-Based Method for Single-Plasmid Tracking in an Outbreak of Carbapenem-Resistant Enterobacteriaceae. J. Clin. Microbiol. 52 (8), 2804– 2812. doi: 10.1128/JCM.00694-14 24850353 PMC4136129 · DOI
  103. Laxminarayan R. Duse A. Wattal C. Zaidi A. K. Wertheim H. F. Sumpradit N.. (2013). Antibiotic Resistance-the Need for Global Solutions. Lancet Infect. Dis. 13 (12), 1057– 1098. doi: 10.1016/S1473-3099(13)70318-9 24252483 · DOI · Paper page
  104. Lazarus B. Paterson D. L. Mollinger J. L. Rogers B. A. (2015). Do Human Extraintestinal Escherichia Coli Infections Resistant to Expanded-Spectrum Cephalosporins Originate From Food-Producing Animals? A Systematic Review. Clin. Infect. Dis. 60 (3), 439– 452. doi: 10.1093/cid/ciu785 25301206 · DOI
  105. Leekitcharoenphon P. Hendriksen R. S. Le Hello S. Weill F. X. Baggesen D. L. Jun S. R.. (2016). Global Genomic Epidemiology of Salmonella Enterica Serovar Typhimurium DT104. Appl. Environ. Microbiol. 82 (8), 2516– 2526. doi: 10.1128/AEM.03821-15 26944846 PMC4959494 · DOI
  106. Leonard A. F. C. Zhang L. Balfour A. J. Garside R. Hawkey P. M. Murray A. K. (2018). Exposure to and Colonisation by Antibiotic-Resistant E. Coli in UK Coastal Water Users: Environmental Surveillance, Exposure Assessment, and Epidemiological Study (Beach Bum Survey). Environ. Int. 114, 326– 333. doi: 10.1016/j.envint.2017.11.003 29343413 · DOI
  107. Lin J. Hunkapiller A. A. Layton A. C. Chang Y. J. Robbins K. R. (2013). Response of Intestinal Microbiota to Antibiotic Growth Promoters in Chickens. Foodborne Pathog. Dis. 10 (4), 331– 337. doi: 10.1089/fpd.2012.1348 23461609 · DOI
  108. Lipsitch M. Siber G. R. (2016). How Can Vaccines Contribute to Solving the Antimicrobial Resistance Problem? mBio 7 (3), e00428–16. doi: 10.1128/mBio.00428-16 PMC4959668 27273824 · DOI
  109. Liu Y. Y. Wang Y. Walsh T. R. Yi L. X. Zhang R. Spencer J.. (2016). Emergence of Plasmid-Mediated Colistin Resistance Mechanism MCR-1 in Animals and Human Beings in China: A Microbiological and Molecular Biological Study. Lancet Infect. Dis. 16 (2), 161– 168. doi: 10.1016/S1473-3099(15)00424-7 26603172 · DOI
  110. Liu C. Wang S. J. Zhang Q. Shao Y. X. (2015). Influence of Three Coccidiostats on the Pharmacokinetics of Florfenicol in Rabbits. Exp. Anim. 64 (1), 73– 79. doi: 10.1538/expanim.14-0064 25319758 PMC4329518 · DOI
  111. Ludden C. Raven K. E. Jamrozy D. Gouliouris T. Blane B. Coll F.. (2019). One Health Genomic Surveillance of Escherichia Coli Demonstrates Distinct Lineages and Mobile Genetic Elements in Isolates From Humans Versus Livestock. mBio 10 (1), e02693–18. doi: 10.1128/mBio.02693-18 PMC6343043 30670621 · DOI
  112. Lv J. Mohsin M. Lei S. Srinivas S. Wiqar R. T. Lin J.. (2018). Discovery of a Mcr-1-Bearing Plasmid in Commensal Colistin-Resistant Escherichia Coli From Healthy Broilers in Faisalabad, Pakistan. Virulence 9 (1), 994– 999. doi: 10.1080/21505594.2018.1462060 29667494 PMC6037438 · DOI
  113. Lynch M. D. Neufeld J. D. (2015). Ecology and Exploration of the Rare Biosphere. Nat. Rev. Microbiol. 13 (4), 217– 229. doi: 10.1038/nrmicro3400 25730701 · DOI
  114. Mackenzie J. S. Jeggo M. (2019). The One Health Approach-Why Is It So Important? Trop. Med. Infect. Dis. 4 (2), 88. doi: 10.3390/tropicalmed4020088 31159338 PMC6630404 · DOI
  115. Ma L. Li B. Jiang X. T. Wang Y. L. Xia Y. Li A. D.. (2017). Catalogue of Antibiotic Resistome and Host-Tracking in Drinking Water Deciphered by a Large Scale Survey. Microbiome 5 (1), 154. doi: 10.1186/s40168-017-0369-0 29179769 PMC5704573 · DOI
  116. Malik A. A. Hussain H. Creswell J. Siddiqui S. FA J. Madhani F.. (2019). Amanullah F: The Impact of Funding on Childhood TB Case Detection in Pakistan. Trop. Med. Infect. Dis. 4 (4), 146. doi: 10.3390/tropicalmed4040146 31847497 PMC6958435 · DOI
  117. Manaia C. M. (2017). Assessing the Risk of Antibiotic Resistance Transmission From the Environment to Humans: Non-Direct Proportionality Between Abundance and Risk. Trends Microbiol. 25 (3), 173– 181. doi: 10.1016/j.tim.2016.11.014 28012687 · DOI
  118. Manyi-Loh C. Mamphweli S. Meyer E. Okoh A. (2018). Antibiotic Use in Agriculture and Its Consequential Resistance in Environmental Sources: Potential Public Health Implications. Molecules (Basel Switzerland) 23 (4), 795. doi: 10.3390/molecules23040795 29601469 PMC6017557 · DOI · Paper page
  119. Marshall B. M. Levy S. B. (2011). Food Animals and Antimicrobials: Impacts on Human Health. Clin. Microbiol. Rev. 24 (4), 718– 733. doi: 10.1128/CMR.00002-11 21976606 PMC3194830 · DOI · Paper page
  120. Martínez J. L. (2011). Bottlenecks in the Transferability of Antibiotic Resistance From Natural Ecosystems to Human Bacterial Pathogens. Front. Microbiol. 2, 265. doi: 10.3389/fmicb.2011.00265 22319513 PMC3249888 · DOI
  121. Martinez-Urtaza J. Trinanes J. Gonzalez-Escalona N. Baker-Austin C. (2016). Is El Niño a Long-Distance Corridor for Waterborne Disease? Nat. Microbiol. 1, 16018. doi: 10.1038/nmicrobiol.2016.18 27572176 · DOI
  122. Marti E. Variatza E. Balcazar J. L. (2014). The Role of Aquatic Ecosystems as Reservoirs of Antibiotic Resistance. Trends Microbiol. 22 (1), 36– 41. doi: 10.1016/j.tim.2013.11.001 24289955 · DOI
  123. Maurer F. P. Christner M. Hentschke M. Rohde H. (2017). Advances in Rapid Identification and Susceptibility Testing of Bacteria in the Clinical Microbiology Laboratory: Implications for Patient Care and Antimicrobial Stewardship Programs. Infect. Dis. Rep. 9 (1), 6839. doi: 10.4081/idr.2017.6839 28458798 PMC5391540 · DOI · Paper page
  124. McCormick D. Lin Y. T. Grey F. (2018). Identification of Host Factors Involved in Human Cytomegalovirus Replication, Assembly, and Egress Using a Two-Step Small Interfering RNA Screen. mBio 9 (3), e00716–18. doi: 10.1128/mBio.00716-18 PMC6020295 29946045 · DOI
  125. McDermott P. F. Davis J. J. (2021). Predicting Antimicrobial Susceptibility From the Bacterial Genome: A New Paradigm for One Health Resistance Monitoring. J. Vet. Pharmacol. Ther. 44 (2), 223– 237. doi: 10.1111/jvp.12913 33010049 · DOI
  126. McEwen S. A. Collignon P. J. (2018). Antimicrobial Resistance: A One Health Perspective. Microbiol. Spectr. 6 (2). doi: 10.1128/9781555819804.ch25 PMC11633550 29600770 · DOI
  127. McEwen S. A. Fedorka-Cray P. J. (2002). Antimicrobial Use and Resistance in Animals. Clin. Infect. Dis. 34 (Suppl 3), S93– s106. doi: 10.1086/340246 11988879 · DOI
  128. McGlinchey T. A. Rafter P. A. Regan F. McMahon G. P. (2008). A Review of Analytical Methods for the Determination of Aminoglycoside and Macrolide Residues in Food Matrices. Anal. Chim. Acta 624 (1), 1– 15. doi: 10.1016/j.aca.2008.05.054 18706307 · DOI
  129. McMichael C. (2015). Climate Change-Related Migration and Infectious Disease. Virulence 6 (6), 548– 553. doi: 10.1080/21505594.2015.1021539 26151221 PMC4720222 · DOI
  130. Mehndiratta P. L. Bhalla P. (2014). Use of Antibiotics in Animal Agriculture & Emergence of Methicillin-Resistant Staphylococcus Aureus (MRSA) Clones: Need to Assess the Impact on Public Health. Indian J. Med. Res. 140 (3), 339– 344. 25366200 PMC4248379
  131. Mellata M. (2013). Human and Avian Extraintestinal Pathogenic Escherichia Coli: Infections, Zoonotic Risks, and Antibiotic Resistance Trends. Foodborne Pathog. Dis. 10 (11), 916– 932. doi: 10.1089/fpd.2013.1533 23962019 PMC3865812 · DOI
  132. Mendes L. W. Braga L. P. P. Navarrete A. A. Souza D. G. Silva G. G. Z. Tsai S. M. (2017). Using Metagenomics to Connect Microbial Community Biodiversity and Functions. Curr. Issues Mol. Biol. 24, 103– 118. doi: 10.21775/cimb.024.103 28686570 · DOI
  133. Miller W. R. Bayer A. S. Arias C. A. (2016). Mechanism of Action and Resistance to Daptomycin in Staphylococcus Aureus and Enterococci. Cold Spring Harb. Perspect. Med. 6 (11), a026997. doi: 10.1101/cshperspect.a026997 27580748 PMC5088507 · DOI
  134. Moura A. Henriques I. Smalla K. Correia A. (2010). Wastewater Bacterial Communities Bring Together Broad-Host Range Plasmids, Integrons and a Wide Diversity of Uncharacterized Gene Cassettes. Res. Microbiol. 161 (1), 58– 66. doi: 10.1016/j.resmic.2009.11.004 20004718 · DOI
  135. Murphy C. P. Reid-Smith R. J. Weese J. S. McEwen S. A. (2010). Evaluation of Specific Infection Control Practices Used by Companion Animal Veterinarians in Community Veterinary Practices in Southern Ontario. Zoonoses Public Health 57 (6), 429– 438. doi: 10.1111/j.1863-2378.2009.01244.x 19638166 · DOI
  136. Nash J. H. Villegas A. Kropinski A. M. Aguilar-Valenzuela R. Konczy P. Mascarenhas M.. (2010). Genome Sequence of Adherent-Invasive Escherichia Coli and Comparative Genomic Analysis With Other E. Coli Pathotypes. BMC Genomics 11, 667. doi: 10.1186/1471-2164-11-667 21108814 PMC3091784 · DOI
  137. National Research Council Committee on Drug Use in Food a (1999). The Use of Drugs in Food Animals: Benefits and Risks (Washington (DC: National Academies Press (US). ©1999 by the National Academy of Sciences. All rights reserved.
  138. Nielsen L. R. Alban L. Ellis-Iversen J. Mintiens K. Sandberg M. (2020). Evaluating Integrated Surveillance of Antimicrobial Resistance: Experiences From Use of Three Evaluation Tools. Clin. Microbiol. Infect. 26 (12), 1606– 1611. doi: 10.1016/j.cmi.2020.03.015 32213319 · DOI
  139. Nielsen P. Gyrd-Hansen N. (1998). Bioavailability of Spiramycin and Lincomycin After Oral Administration to Fed and Fasted Pigs. J. Vet. Pharmacol. Ther. 21 (4), 251– 256. doi: 10.1046/j.1365-2885.1998.00131.x 9731946 · DOI
  140. Oliver S. P. Jayarao B. M. Almeida R. A. (2005). Foodborne Pathogens in Milk and the Dairy Farm Environment: Food Safety and Public Health Implications. Foodborne Pathog. Dis. 2 (2), 115– 129. doi: 10.1089/fpd.2005.2.115 15992306 · DOI
  141. Oniciuc E. A. Likotrafiti E. Alvarez-Molina A. Prieto M. Santos J. A. Alvarez-Ordóñez A. (2018). The Present and Future of Whole Genome Sequencing (WGS) and Whole Metagenome Sequencing (WMS) for Surveillance of Antimicrobial Resistant Microorganisms and Antimicrobial Resistance Genes Across the Food Chain. Genes 9 (5), 268. doi: 10.3390/genes9050268 29789467 PMC5977208 · DOI
  142. Organization WH (2004) in Joint FAO/OIE/WHO Expert Workshop on Non-Human Antimicrobial Usage and Antimicrobial Resistance: Scientific Assessment, December 1-5, 2003 (Geneva: World Health Organization).
  143. Page S. W. Gautier P. (2012). Use of Antimicrobial Agents in Livestock. Rev. Sci. Tech. (Int. Off. Epizoot.) 31 (1), 145– 188. doi: 10.20506/rst.31.1.2106 22849274 · DOI
  144. Papich M. G. (2015). Saunders Handbook of Veterinary Drugs-E-Book: Small and Large Animal (Elsevier Health Sciences).
  145. Pärnänen K. M. M. Narciso-da-Rocha C. Kneis D. Berendonk T. U. Cacace D. Do T. T.. (2019). Antibiotic Resistance in European Wastewater Treatment Plants Mirrors the Pattern of Clinical Antibiotic Resistance Prevalence. Sci. Adv. 5 (3), eaau9124. doi: 10.1126/sciadv.aau9124 30944853 PMC6436925 · DOI
  146. Partridge S. R. Kwong S. M. Firth N. Jensen S. O. (2018). Mobile Genetic Elements Associated With Antimicrobial Resistance. Clin. Microbiol. Rev. 31 (4), e00088–17. doi: 10.1128/CMR.00088-17 PMC6148190 30068738 · DOI · Paper page
  147. Patel D. R. Bhartiya S. K. Kumar R. Shukla V. K. Nath G. (2021). Use of Customized Bacteriophages in the Treatment of Chronic Nonhealing Wounds: A Prospective Study. Int. J. Lower Extrem. Wounds 20 (1), 37– 46. doi: 10.1177/1534734619881076 31752578 · DOI
  148. Paulus G. K. Hornstra L. M. Alygizakis N. Slobodnik J. Thomaidis N. Medema G. (2019). The Impact of on-Site Hospital Wastewater Treatment on the Downstream Communal Wastewater System in Terms of Antibiotics and Antibiotic Resistance Genes. Int. J. Hyg. Environ. Health 222 (4), 635– 644. doi: 10.1016/j.ijheh.2019.01.004 30737165 · DOI
  149. Pehrsson E. C. Tsukayama P. Patel S. Mejía-Bautista M. Sosa-Soto G. Navarrete K. M.. (2016). Interconnected Microbiomes and Resistomes in Low-Income Human Habitats. Nature 533 (7602), 212– 216. doi: 10.1038/nature17672 27172044 PMC4869995 · DOI · Paper page
  150. Perry J. A. Wright G. D. (2014). Forces Shaping the Antibiotic Resistome. BioEssays 36 (12), 1179– 1184. doi: 10.1002/bies.201400128 25213620 · DOI
  151. Plumb D. C. (2018). Plumb's Veterinary Drug Handbook: Desk (John Wiley & Sons).
  152. Proudfoot C. Lillico S. Tait-Burkard C. (2019). Genome Editing for Disease Resistance in Pigs and Chickens. Anim. Front. 9 (3), 6– 12. doi: 10.1093/af/vfz013 PMC6951997 32002257 · DOI
  153. Pruden A. Larsson D. G. Amézquita A. Collignon P. Brandt K. K. Graham D. W.. (2013). Management Options for Reducing the Release of Antibiotics and Antibiotic Resistance Genes to the Environment. Environ. Health Perspect. 121 (8), 878– 885. doi: 10.1289/ehp.1206446 23735422 PMC3734499 · DOI
  154. Relman D. A. Lipsitch M. (2018). Microbiome as a Tool and a Target in the Effort to Address Antimicrobial Resistance. Proc. Natl. Acad. Sci. U. S. A. 115 (51), 12902– 12910. doi: 10.1073/pnas.1717163115 30559176 PMC6304941 · DOI
  155. Robinson T. P. Bu D. P. Carrique-Mas J. Fèvre E. M. Gilbert M. Grace D.. (2016). Antibiotic Resistance Is the Quintessential One Health Issue. Trans. R. Soc. Trop. Med. Hyg. 110 (7), 377– 380. doi: 10.1093/trstmh/trw048 27475987 PMC4975175 · DOI
  156. Rodríguez-Chueca J. Varella Della Giustina S. Rocha J. Fernandes T. Pablos C. Encinas Á.. (2019). Assessment of Full-Scale Tertiary Wastewater Treatment by UV-C Based-AOPs: Removal or Persistence of Antibiotics and Antibiotic Resistance Genes? Sci. Total Environ. 652, 1051– 1061. doi: 10.1016/j.scitotenv.2018.10.223 30586792 · DOI
  157. Rowell S. King C. Jenkins C. Dallman T. J. Decraene V. Lamden K.. (2016). An Outbreak of Shiga Toxin-Producing Escherichia Coli Serogroup O157 Linked to a Lamb-Feeding Event. Epidemiol. Infect. 144 (12), 2494– 2500. doi: 10.1017/S0950268816001229 27297133 PMC9150456 · DOI
  158. Ruppé E. Chappuis F. (2017). What and How Should We Tell Travellers About Antimicrobial Resistance? J. Travel Med. 24 (2). doi: 10.1093/jtm/taw089 28395100 · DOI
  159. Ruppé E. Ghozlane A. Tap J. Pons N. Alvarez A. S. Maziers N.. (2019). Prediction of the Intestinal Resistome by a Three-Dimensional Structure-Based Method. Nat. Microbiol. 4 (1), 112– 123. doi: 10.1038/s41564-018-0292-6 30478291 · DOI
  160. Sabouri S. Sepehrizadeh Z. Amirpour-Rostami S. Skurnik M. (2017). A Minireview on the In Vitro and In Vivo Experiments With Anti-Escherichia Coli O157:H7 Phages as Potential Biocontrol and Phage Therapy Agents. Int. J. Food Microbiol. 243, 52– 57. doi: 10.1016/j.ijfoodmicro.2016.12.004 27978506 · DOI
  161. Scott H. M. Acuff G. Bergeron G. Bourassa M. W. Gill J. Graham D. W.. (2019). Critically Important Antibiotics: Criteria and Approaches for Measuring and Reducing Their Use in Food Animal Agriculture. Ann. N. Y. Acad. Sci. 1441 (1), 8– 16. doi: 10.1111/nyas.14058 30924540 PMC6850619 · DOI
  162. Seib K. L. Zhao X. Rappuoli R. (2012). Developing Vaccines in the Era of Genomics: A Decade of Reverse Vaccinology. Clin. Microbiol. Infect. 18 (Suppl 5), 109– 116. doi: 10.1111/j.1469-0691.2012.03939.x 22882709 · DOI
  163. Singer A. C. Shaw H. Rhodes V. Hart A. (2016). Review of Antimicrobial Resistance in the Environment and Its Relevance to Environmental Regulators. Front. Microbiol. 7, 1728. doi: 10.3389/fmicb.2016.01728 27847505 PMC5088501 · DOI
  164. Singhal N. Kumar M. Kanaujia P. K. Virdi J. S. (2015). MALDI-TOF Mass Spectrometry: An Emerging Technology for Microbial Identification and Diagnosis. Front. Microbiol. 6, 791. doi: 10.3389/fmicb.2015.00791 26300860 PMC4525378 · DOI
  165. So A. D. Shah T. A. Roach S. Ling Chee Y. Nachman K. E. (2015). An Integrated Systems Approach Is Needed to Ensure the Sustainability of Antibiotic Effectiveness for Both Humans and Animals. J. Law Med. Ethics 43 Suppl 3, 38– 45. doi: 10.1111/jlme.12273 26243242 · DOI
  166. Stalder T. Press M. O. Sullivan S. Liachko I. Top E. M. (2019). Linking the Resistome and Plasmidome to the Microbiome. ISME J. 13 (10), 2437– 2446. doi: 10.1038/s41396-019-0446-4 31147603 PMC6776055 · DOI
  167. Su M. Satola S. W. Read T. D. (2019). Genome-Based Prediction of Bacterial Antibiotic Resistance. J. Clin. Microbiol. 57 (3), e01405–18. doi: 10.1128/JCM.01405-18 PMC6425178 30381421 · DOI
  168. Tacconelli E. Carrara E. Savoldi A. Harbarth S. Mendelson M. Monnet D. L.. (2018). Discovery, Research, and Development of New Antibiotics: The WHO Priority List of Antibiotic-Resistant Bacteria and Tuberculosis. Lancet Infect. Dis. 18 (3), 318– 327. doi: 10.1016/S1473-3099(17)30753-3 29276051 · DOI · Paper page
  169. Theilen U. Wilson L. Wilson G. Beattie J. O. Qureshi S. Simpson D. (2008). Management of Invasive Meningococcal Disease in Children and Young People: Summary of SIGN Guidelines. BMJ (Clinical research ed.) 336 (7657), 1367– 1370. doi: 10.1136/bmj.a129 PMC2427067 18556318 · DOI
  170. Tzouvelekis L. S. Markogiannakis A. Psichogiou M. Tassios P. T. Daikos G. L. (2012). Carbapenemases in Klebsiella Pneumoniae and Other Enterobacteriaceae: An Evolving Crisis of Global Dimensions. Clin. Microbiol. Rev. 25 (4), 682– 707. doi: 10.1128/CMR.05035-11 23034326 PMC3485753 · DOI
  171. Van Boeckel T. P. Brower C. Gilbert M. Grenfell B. T. Levin S. A. Robinson T. P.. (2015). Global Trends in Antimicrobial Use in Food Animals. Proc. Natl. Acad. Sci. U. S. A. 112 (18), 5649– 5654. doi: 10.1073/pnas.1503141112 25792457 PMC4426470 · DOI
  172. Van Boeckel T. P. Glennon E. E. Chen D. Gilbert M. Robinson T. P. Grenfell B. T.. (2017). Reducing Antimicrobial Use in Food Animals. Science (New York N.Y.) 357 (6358), 1350– 1352. doi: 10.1126/science.aao1495 28963240 PMC6510296 · DOI
  173. Van Camp P. J. Haslam D. B. Porollo A. (2020). Prediction of Antimicrobial Resistance in Gram-Negative Bacteria From Whole-Genome Sequencing Data. Front. Microbiol. 11, 1013. doi: 10.3389/fmicb.2020.01013 32528441 PMC7262952 · DOI
  174. Vidaver A. K. (2002). Uses of Antimicrobials in Plant Agriculture. Clin. Infect. Dis. 34 (Suppl 3), S107– S110. doi: 10.1086/340247 11988880 · DOI
  175. Wales A. Davies R. (2015). Co-Selection of Resistance to Antibiotics, Biocides and Heavy Metals, and its Relevance to Foodborne Pathogens. Antibiotics (Basel) 4, 567– 604. doi: 10.3390/antibiotics4040567 27025641 PMC4790313 · DOI
  176. Walsh T. R. Weeks J. Livermore D. M. Toleman M. A. (2011). Dissemination of NDM-1 Positive Bacteria in the New Delhi Environment and its Implications for Human Health: An Environmental Point Prevalence Study. Lancet Infect. Dis. 11 (5), 355– 362. doi: 10.1016/S1473-3099(11)70059-7 21478057 · DOI
  177. Waltz E. (2017). First Genetically Engineered Salmon Sold in Canada. Nature 548 (7666), 148. doi: 10.1038/nature.2017.22116 28796219 · DOI
  178. Ward M. J. Goncheva M. Richardson E. McAdam P. R. Raftis E. Kearns A.. (2016). Identification of Source and Sink Populations for the Emergence and Global Spread of the East-Asia Clone of Community-Associated MRSA. Genome Biol. 17 (1), 160. doi: 10.1186/s13059-016-1022-0 27459968 PMC4962458 · DOI
  179. Wee B. A. Muloi D. M. van Bunnik B. A. D. (2020). Quantifying the Transmission of Antimicrobial Resistance at the Human and Livestock Interface With Genomics. Clin. Microbiol. Infect. 26 (12), 1612–1616. doi: 10.1016/j.cmi.2020.09.019 PMC7721588 32979568 · DOI
  180. White A. Hughes J. M. (2019). Critical Importance of a One Health Approach to Antimicrobial Resistance. EcoHealth 16 (3), 404– 409. doi: 10.1007/s10393-019-01415-5 31250160 · DOI
  181. Wolk D. M. Kaleta E. J. Wysocki V. H. (2012). PCR-Electrospray Ionization Mass Spectrometry: The Potential to Change Infectious Disease Diagnostics in Clinical and Public Health Laboratories. J. Mol. Diagn. 14 (4), 295– 304. doi: 10.1016/j.jmoldx.2012.02.005 22584138 PMC7106027 · DOI
  182. Woolhouse M. E. Ward M. J. (2013). Microbiology. Sources of Antimicrobial Resistance. Science (New York N.Y.) 341 (6153), 1460– 1461. doi: 10.1126/science.1243444 24030495 · DOI
  183. Yang Y. Xu C. Cao X. Lin H. Wang J. (2017). Antibiotic Resistance Genes in Surface Water of Eutrophic Urban Lakes are Related to Heavy Metals, Antibiotics, Lake Morphology and Anthropic Impact. Ecotoxicology (London England) 26 (6), 831– 840. doi: 10.1007/s10646-017-1814-3 28516210 · DOI
  184. Yong Kim J. Shakow A. Mate K. Vanderwarker C. Gupta R. Farmer P. (2005). Limited Good and Limited Vision: Multidrug-Resistant Tuberculosis and Global Health Policy. Soc. Sci. Med. (1982) 61 (4), 847– 859. doi: 10.1016/j.socscimed.2004.08.046 15896895 · DOI
  185. Young V. B. (2016). Therapeutic Manipulation of the Microbiota: Past, Present, and Considerations for the Future. Clin. Microbiol. Infect. 22 (11), 905– 909. doi: 10.1016/j.cmi.2016.09.001 27619640 PMC5125820 · DOI
  186. Yu P. Zaleski A. Li Q. He Y. Mapili K. Pruden A.. (2018). Elevated Levels of Pathogenic Indicator Bacteria and Antibiotic Resistance Genes After Hurricane Harvey’s Flooding in Houston. Environ. Sci. Technol. Lett. 5 (8), 481– 486. doi: 10.1021/acs.estlett.8b00329 · DOI · Paper page
  187. Zhou Z. He S. Liu Y. Cao Y. Meng K. Yao B.. (2011). Gut Microbial Status Induced by Antibiotic Growth Promoter Alters the Prebiotic Effects of Dietary DVAQUA® on Aeromonas Hydrophila-Infected Tilapia: Production, Intestinal Bacterial Community and Non-Specific Immunity. Vet. Microbiol. 149 (3-4), 399– 405. doi: 10.1016/j.vetmic.2010.11.022 21146333 · DOI
  188. Ziv G. Nouws J. F. van Ginneken C. A. (1982). The Pharmacokinetics and Tissue Levels of Polymyxin B, Colistin and Gentamicin in Calves. J. Vet. Pharmacol. Ther. 5 (1), 45– 58. doi: 10.1111/j.1365-2885.1982.tb00497.x 6284955 · DOI

Cited by

Sorted by citations

Authors
Aslam, B., Khurshid, M., Arshad, M. I., Muzammil, S., Rasool, M., Yasmeen, N., Shah, T., Chaudhry, T. H., Rasool, M. H., Shahid, A., Xueshan, X., & Baloch, Z.
Affiliations
  • Government College University, Faisalabad (PK)
  • University of Agriculture Faisalabad (PK)
  • South China Agricultural University (CN)
  • Kunming University (CN)
  • Riphah International University (PK)
Corresponding author
Baloch, Zulqarnain
ORCID
Venue
Frontiers in Cellular and Infection Microbiology
Publisher
Frontiers Media SA
Published
2021-11-25
Volume
11
Pages
771510-771510
ISSN
2235-2988 (ISSN-L)
DOI
10.3389/fcimb.2021.771510
PMC
PMC8656695
OpenAlex
W3216351184
Cited by
609
References
5
Citations by year
2026: 118 · 2025: 161 · 2024: 161 · 2023: 118 · 2022: 51
FWCI
9.20
Type
journal article
Language
en
Update notices
corrigendum (2024-09-25)
Open access
Licence
Locations
  • Frontiers in Cellular and Infection Microbiology (publishedVersion, cc-by)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
Funders
National Natural Science Foundation of China
Topics
  • Life Sciences › Immunology and Microbiology › Applied Microbiology and Biotechnology › Antibiotic Use and Resistance
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Medicine › Antibiotic Resistance in Bacteria
  • Health Sciences › Medicine › Public Health, Environmental and Occupational Health › Zoonotic diseases and public health
Keywords
antibiotic resistance, One Health, antimicrobial resistance, superbugs, human-animal-environment interface, national action plans, antimicrobial stewardship, global health threats
MeSH terms
One Health, Animals, Anti-Bacterial Agents, Drug Resistance, Microbial, Humans, Public Health, Global Health

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