Stress-induced accumulation of DcAOX1 and DcAOX2a transcripts coincides with critical time point for structural biomass prediction in carrot primary cultures (Daucus carota L.).

Campos, M. Doroteia; Nogales, Amaia; Cardoso, Hélia G.; Kumar, Sarma R.; Nobre, Tânia; Sathishkumar, Ramalingam; Arnholdt-Schmitt, Birgit

doi:10.3389/fgene.2016.00001

Cited by 152Plant tissue culture and regenerationPlant Stress Responses and TolerancePlant nutrient uptake and metabolism

Stress-induced accumulation of DcAOX1 and DcAOX2a transcripts coincides with critical time point for structural biomass prediction in carrot primary cultures (Daucus carota L.).

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Campos, M. Doroteia, Nogales, Amaia, Cardoso, Hélia G., Kumar, Sarma R., Nobre, Tânia, Sathishkumar, Ramalingam, Arnholdt-Schmitt, Birgit·2016·Frontiers in Genetics

DOI 10.3389/fgene.2016.00001PMC PMC4731517

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Abstract

Stress-adaptive cell plasticity in target tissues and cells for plant biomass growth is important for yield stability. In vitro systems with reproducible cell plasticity can help to identify relevant metabolic and molecular events during early cell reprogramming. In carrot, regulation of the central root meristem is a critical target for yield-determining secondary growth. Calorespirometry, a tool previously identified as promising for predictive growth phenotyping has been applied to measure the respiration rate in carrot meristem. In a carrot primary culture system (PCS), this tool allowed identifying an early peak related with structural biomass formation during lag phase of growth, around the 4th day of culture. In the present study, we report a dynamic and correlated expression of carrot AOX genes (DcAOX1 and DcAOX2a) during PCS lag phase and during exponential growth. Both genes showed an increase in transcript levels until 36 h after explant inoculation, and a subsequent down-regulation, before the initiation of exponential growth. In PCS growing at two different temperatures (21°C and 28°C), DcAOX1 was also found to be more expressed in the highest temperature. DcAOX genes' were further explored in a plant pot experiment in response to chilling, which confirmed the early AOX transcript increase prior to the induction of a specific anti-freezing gene. Our findings point to DcAOX1 and DcAOX2a as being reasonable candidates for functional marker development related to early cell reprogramming. While the genomic sequence of DcAOX2a was previously described, we characterize here the complete genomic sequence of DcAOX1.

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Calorespirometry has usually been applied to predict growth responses as a function of temperature in various plant tissues.
“Calorespirometry has usually been applied to predict growth responses as a function of temperature in various plant tissues (Nogales et al., 2013, 2015, 2020; Campos et al., 2016).”
From Exploring the Applicability of Calorespirometry to Assess Seed Metabolic Stability Upon Temperature Stress Conditions—Pisum sativum L. Used as a Case Study (2022) · cites this paper as Campos et al., 2016
The Introduction says calorespirometry has been used to monitor temperature-dependent growth in carrot in vitro cultures, and the Materials and Methods describe measurements at 21°C and 28°C. Our copy supports that application in carrot cultures, but does not establish that calorespirometry has usually been applied this way across various plant tissues. Page numbers were not provided in the passages. (LLM, conf=0.84)
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Calorespirometry has been used as a screening tool to assess metabolic and respiratory changes associated with cell reprogramming events, including plant plasticity towards different growing temperatures.
“This approach has been used as a screening tool to assess metabolic and respiratory changes associated with cell reprogramming events (ArnholdtSchmitt et al., 2018) that include plant plasticity towards different growing temperatures (Nogales et al., 2013, 2015, 2020; Campos et al., 2016).”
From Exploring the Applicability of Calorespirometry to Assess Seed Metabolic Stability Upon Temperature Stress Conditions—Pisum sativum L. Used as a Case Study (2022) · cites this paper as Campos et al., 2016
The link between the alternative oxidase (AOX) and structural biomass formation was previously highlighted by Campos et al. (2016) in a carrot primary culture system.
“The link between the alternative oxidase (AOX), the key enzyme in the alternative respiratory pathway, and structural biomass formation was previously highlighted by Campos et al. (2016) in a carrot primary culture system.”
From Exploring the Applicability of Calorespirometry to Assess Seed Metabolic Stability Upon Temperature Stress Conditions—Pisum sativum L. Used as a Case Study (2022) · cites this paper as Campos et al. (2016)

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Livak, K. J., & Schmittgen, T. D. (2001) · Methods · doi:10.1006/meth.2001.1262 · Cited by 180,860 · see citing works
A Revised Medium for Rapid Growth and Bio Assays with Tobacco Tissue Cultures
Murashige, T., & Skoog, F. K. (1962) · Physiologia Plantarum · doi:10.1111/j.1399-3054.1962.tb08052.x · Cited by 67,420 · see citing works
NIH Image to ImageJ: 25 years of image analysis
Schneider, C. A., Rasband, W. S., & Eliceiri, K. W. (2012) · Nature Methods · doi:10.1038/nmeth.2089 · Cited by 64,638 · see citing works
Biostatistical Analysis
Baltosser, W. H., & Zar, J. H. (1996) · Ecology · doi:10.2307/2265725 · Cited by 35,166 · see citing works
A rapid alkaline extraction procedure for screening recombinant plasmid DNA
Birnboim, H. C., & Doly, J. (1979) · Nucleic Acids Research · doi:10.1093/nar/7.6.1513 · Cited by 14,686 · see citing works
The rapid generation of mutation data matrices from protein sequences
Jones, D. T., Taylor, W. R., & Thornton, J. M. (1992) · Computer applications in the biosciences · doi:10.1093/bioinformatics/8.3.275 · Cited by 6,916 · see citing works
Mutation of the mouse klotho gene leads to a syndrome resembling ageing
Kuro-o, M., Matsumura, Y., Aizawa, H., Kawaguchi, H., Suga, T., Utsugi, T., Ohyama, Y., Kurabayashi, M., Kaname, T., Kume, E., et al. (1997) · Nature · doi:10.1038/36285 · Cited by 3,837 · see citing works
ProtTest: selection of best-fit models of protein evolution
Abascal, F., Zardoya, R., & Posada, D. (2005) · Bioinformatics · doi:10.1093/bioinformatics/bti263 · Cited by 3,063 · see citing works
Plant phenotypic plasticity in a changing climate
Nicotra, A. B., Atkin, O. K., Bonser, S. P., Davidson, A. M., Finnegan, E. J., Mathesius, U., Poot, P., Purugganan, M. D., Richards, C. L., Valladares, F., et al. (2010) · Trends in Plant Science · doi:10.1016/j.tplants.2010.09.008 · Cited by 2,207 · see citing works
Computational method to predict mitochondrially imported proteins and their targeting sequences.
Claros, M. G., & Vincens, P. (1996) · European Journal of Biochemistry · doi:10.1111/j.1432-1033.1996.00779.x · Cited by 1,736 · see citing works
ProtTest-HPC: Fast Selection of Best-Fit Models of Protein Evolution
Darriba, D., Taboada, G. L., Doallo, R., & Posada, D. (2011) · Lecture notes in computer science · doi:10.1007/978-3-642-21878-1_22 · Cited by 811 · see citing works
Alternative Oxidase: A Mitochondrial Respiratory Pathway to Maintain Metabolic and Signaling Homeostasis during Abiotic and Biotic Stress in Plants
Vanlerberghe, G. C. (2013) · International Journal of Molecular Sciences · doi:10.3390/ijms14046805 · Cited by 722 · see citing works
Quantitative Trait Loci and Crop Performance under Abiotic Stress: Where Do We Stand?: Table I.
Collins, N. C., Tardieu, F., & Tuberosa, R. (2008) · PLANT PHYSIOLOGY · doi:10.1104/pp.108.118117 · Cited by 559 · see citing works
Somatic embryogenesis — Stress-induced remodeling of plant cell fate
Fehér, A. (2014) · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · doi:10.1016/j.bbagrm.2014.07.005 · Cited by 480 · see citing works
Applications and statistics for multiple high-scoring segments in molecular sequences.
Karlin, S., & Altschul, S. F. (1993) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.90.12.5873 · Cited by 372 · see citing works
Stress-induced co-expression of alternative respiratory chain components in Arabidopsis thaliana
Clifton, R., Lister, R., Parker, K. L., Sappl, P. G., Elhafez, D., Millar, A. H., Day, D. A., & Whelan, J. (2005) · Plant Molecular Biology · doi:10.1007/s11103-005-5514-7 · Cited by 339 · see citing works
Covalent and Noncovalent Dimers of the Cyanide-Resistant Alternative Oxidase Protein in Higher Plant Mitochondria and Their Relationship to Enzyme Activity
Umbach, A. L., & Siedow, J. N. (1993) · PLANT PHYSIOLOGY · doi:10.1104/pp.103.3.845 · Cited by 316 · see citing works
Alternative oxidase: a target and regulator of stress responses
Aken, O. V., Giraud, E., Clifton, R., & Whelan, J. (2009) · Physiologia Plantarum · doi:10.1111/j.1399-3054.2009.01240.x · Cited by 247 · see citing works
Plant resistance to cold stress: Mechanisms and environmental signals triggering frost hardening and dehardening
Beck, E. H., Heim, R., & Hansen, J. (2004) · Journal of Biosciences · doi:10.1007/bf02712118 · Cited by 245 · see citing works
Compilation of mRNA Polyadenylation Signals in Arabidopsis Revealed a New Signal Element and Potential Secondary Structures
Loke, J. C., Stahlberg, E. A., Strenski, D. G., Haas, B. J., Wood, P. C., & Li, Q. Q. (2005) · PLANT PHYSIOLOGY · doi:10.1104/pp.105.060541 · Cited by 242 · see citing works
The Alternative Oxidase of Plant Mitochondria Is Involved in the Acclimation of Shoot Growth at Low Temperature. A Study of Arabidopsis AOX1a Transgenic Plants
Fiorani, F., Umbach, A. L., & Siedow, J. N. (2005) · PLANT PHYSIOLOGY · doi:10.1104/pp.105.070789 · Cited by 207 · see citing works
AOX – a functional marker for efficient cell reprogramming under stress?
Arnholdt‐Schmitt, B., Costa, J. H., & de Melo, D. F. (2006) · Trends in Plant Science · doi:10.1016/j.tplants.2006.05.001 · Cited by 201 · see citing works
Self-citation
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Saisho, D., Nambara, E., Naito, S., Tsutsumi, N., Hirai, A., & Nakazono, M. (1997) · Plant Molecular Biology · doi:10.1023/a:1005818507743 · Cited by 196 · see citing works
New insight into the structure and function of the alternative oxidase
Berthold, D. A., Andersson, M. E., & Nordlund, P. (2000) · Biochimica et Biophysica Acta (BBA) - Bioenergetics · doi:10.1016/s0005-2728(00)00149-3 · Cited by 195 · see citing works
Molecular Distinction between Alternative Oxidase from Monocots and Dicots
Considine, M. J., Holtzapffel, R., Day, D. A., Whelan, J., & Millar, A. H. (2002) · PLANT PHYSIOLOGY · doi:10.1104/pp.004150 · Cited by 194 · see citing works
Recent Advances in Plant in vitro Culture
Leva, A. R., & Rinaldi, L. M. R. (2012) · InTech eBooks · doi:10.5772/52760 · Cited by 189 · see citing works
Induction of somatic embryogenesis as an example of stress-related plant reactions
Zavattieri, M. A., Frederico, A. M., Lima, M., Sabino, R., & Arnholdt‐Schmitt, B. (2010) · Electronic Journal of Biotechnology · doi:10.2225/vol13-issue1-fulltext-4 · Cited by 179 · see citing works
Self-citation
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Sieger, S. M., Kristensen, B. K., Robson, C. A., Amirsadeghi, S., Eng, E. W. Y., Abdel-Mesih, A., Møller, I. M., & Vanlerberghe, G. C. (2005) · Journal of Experimental Botany · doi:10.1093/jxb/eri146 · Cited by 173 · see citing works
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Shen, Y., Ji, G., Haas, B. J., Wu, X., Zheng, J., Reese, G. J., & Li, Q. Q. (2008) · Nucleic Acids Research · doi:10.1093/nar/gkn158 · Cited by 166 · see citing works
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Vanlerberghe, G. C., Cvetkovska, M., & Wang, J. (2009) · Physiologia Plantarum · doi:10.1111/j.1399-3054.2009.01254.x · Cited by 158 · see citing works
Somatic embryogenesis: life and death processes during apical–basal patterning
Smertenko, A., & Bozhkov, P. V. (2014) · Journal of Experimental Botany · doi:10.1093/jxb/eru005 · Cited by 158 · see citing works
Regulation of the Cyanide-resistant Alternative Oxidase of Plant Mitochondria
Rhoads, D. M., Umbach, A. L., Sweet, C. R., Lennon, A. M., Rauch, G. S., & Siedow, J. N. (1998) · Journal of Biological Chemistry · doi:10.1074/jbc.273.46.30750 · Cited by 157 · see citing works
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Andersson, M. E., & Nordlund, P. (1999) · FEBS Letters · doi:10.1016/s0014-5793(99)00376-2 · Cited by 154 · see citing works
Alternative oxidase: a defence against metabolic fluctuations?
Rasmusson, A. G., Fernie, A. R., & van Dongen, J. T. (2009) · Physiologia Plantarum · doi:10.1111/j.1399-3054.2009.01252.x · Cited by 150 · see citing works
Membrane-Bound Diiron Carboxylate Proteins
Berthold, D. A., & Stenmark, P. (2003) · Annual Review of Plant Biology · doi:10.1146/annurev.arplant.54.031902.134915 · Cited by 150 · see citing works
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Moore, A. L., Shiba, T., Young, L., Harada, S., Kita, K., & Ito, K. (2013) · Annual Review of Plant Biology · doi:10.1146/annurev-arplant-042811-105432 · Cited by 140 · see citing works
The active site of the cyanide‐resistant oxidase from plant mitochondria contains a binuclear iron center
Siedow, J. N., Umbach, A. L., & Moore, A. L. (1995) · FEBS Letters · doi:10.1016/0014-5793(95)00196-g · Cited by 139 · see citing works
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Finnegan, P. M., Whelan, J., Millar, A. H., Zhang, Q., Smith, M. K., Wiskich, J. T., & Day, D. A. (1997) · PLANT PHYSIOLOGY · doi:10.1104/pp.114.2.455 · Cited by 138 · see citing works
Induction of somatic embryogenesis as an example of stress-related plant reactions
Zavattieri, M. A., Frederico, A. M., Lima, M., Sabino, R., & Arnholdt‐Schmitt, B. (2010) · Americanae (AECID Library) · doi:10.4067/s0717-34582010000100012 · Cited by 137 · see citing works
Self-citation
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Linke, B., Nothnagel, T., & Börner, T. (2003) · The Plant Journal · doi:10.1046/j.1365-313x.2003.01703.x · Cited by 126 · see citing works
Stress-Induced Cell Reprogramming. A Role for Global Genome Regulation?
Arnholdt‐Schmitt, B. (2004) · PLANT PHYSIOLOGY · doi:10.1104/pp.104.042531 · Cited by 125 · see citing works
Self-citation
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Montealegre, J., Valderrama, L., Sánchez, S., Herrera, R., Besoain, X. A., & Pérez, L. M. (2010) · Electronic Journal of Biotechnology · doi:10.2225/vol13-issue2-fulltext-6 · Cited by 118 · see citing works
Alternative polyadenylation and gene expression regulation in plants
Xing, D., & Li, Q. Q. (2010) · Wiley Interdisciplinary Reviews - RNA · doi:10.1002/wrna.59 · Cited by 110 · see citing works
Investigations on Growth and Metabolism of Plant Cells
Steward, F. C., Caplin, S. M., & Millar, F. K. (1952) · Annals of Botany · doi:10.1093/oxfordjournals.aob.a083303 · Cited by 100 · see citing works
FancyGene: dynamic visualization of gene structures and protein domain architectures on genomic loci
Rambaldi, D., & Ciccarelli, F. D. (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp381 · Cited by 99 · see citing works
Researches on Coprophilous Fungi. II.1
Massee, G., & Salmon, E. S. (1902) · Annals of Botany · doi:10.1093/oxfordjournals.aob.a088871 · Cited by 93 · see citing works
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Polidoros, A. N., Mylona, P. V., & Arnholdt‐Schmitt, B. (2009) · Physiologia Plantarum · doi:10.1111/j.1399-3054.2009.01284.x · Cited by 88 · see citing works
Self-citation
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Holtzapffel, R., Castelli, J. M., Finnegan, P. M., Millar, A. H., Whelan, J., & Day, D. A. (2003) · Biochimica et Biophysica Acta (BBA) - Bioenergetics · doi:10.1016/s0005-2728(03)00112-9 · Cited by 88 · see citing works
EPR Studies of the Mitochondrial Alternative Oxidase
Berthold, D. A., Voevodskaya, N. V., Stenmark, P., Gräslund, A., & Nordlund, P. (2002) · Journal of Biological Chemistry · doi:10.1074/jbc.m206724200 · Cited by 78 · see citing works
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Albury, M. S., Affourtit, C., Crichton, P. G., & Moore, A. L. (2002) · Journal of Biological Chemistry · doi:10.1074/jbc.m109853200 · Cited by 73 · see citing works
Stress induces cell dedifferentiation in plants
Grafi, G., & Barak, S. (2014) · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · doi:10.1016/j.bbagrm.2014.07.015 · Cited by 72 · see citing works
QUANTITATIVE VARIATIONS OF NUCLEAR DNA DURING PLANT DEVELOPMENT: A CRITICAL ANALYSIS
Bassi, P. (1990) · Biological reviews/Biological reviews of the Cambridge Philosophical Society · doi:10.1111/j.1469-185x.1990.tb01424.x · Cited by 69 · see citing works
The Stem Cell State in Plant Development and in Response to Stress
Grafi, G., Florentin, A., Ransbotyn, V., & Morgenstern, Y. (2011) · Frontiers in Plant Science · doi:10.3389/fpls.2011.00053 · Cited by 67 · see citing works
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Costa, J. H., McDonald, A. E., Arnholdt‐Schmitt, B., & de Melo, D. F. (2014) · Mitochondrion · doi:10.1016/j.mito.2014.04.007 · Cited by 66 · see citing works
Self-citation
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Macedo, E. S., Cardoso, H. G., Hernández, A., Peixe, A., Polidoros, A. N., Ferreira, A. O., Cordeiro, A. M., & Arnholdt‐Schmitt, B. (2009) · Physiologia Plantarum · doi:10.1111/j.1399-3054.2009.01302.x · Cited by 60 · see citing works
Self-citation
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Costa, J. H., Mota, É. F., Cambursano, M. V., Lauxmann, M. A., de Oliveira, L. M. N., Lima, M. D. G. S., Orellano, E. G., & de Melo, D. F. (2009) · Journal of Plant Physiology · doi:10.1016/j.jplph.2009.11.001 · Cited by 59 · see citing works
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Polidoros, A. N., Mylona, P. V., Pasentsis, K., Scandalios, J. G., & Tsaftaris, A. S. (2005) · Redox Report · doi:10.1179/135100005x21688 · Cited by 59 · see citing works
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Ajayi, W. U., Chaudhuri, M., & Hill, G. C. (2002) · Journal of Biological Chemistry · doi:10.1074/jbc.m111477200 · Cited by 58 · see citing works
In vitro Tissue Culture, a Tool for the Study and Breeding of Plants Subjected to Abiotic Stress Conditions
Ma, R., & Gómez‐Cadenas, ‪. (2012) · InTech eBooks · doi:10.5772/50671 · Cited by 56 · see citing works
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Moore, A. L., Carré, J. E., Affourtit, C., Albury, M. S., Crichton, P. G., Kita, K., & Heathcote, P. (2008) · Biochimica et Biophysica Acta (BBA) - Bioenergetics · doi:10.1016/j.bbabio.2008.01.004 · Cited by 54 · see citing works
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Grant, N. M., Onda, Y., Kakizaki, Y., Ito, K., Watling, J. R., & Robinson, S. A. (2009) · PLANT PHYSIOLOGY · doi:10.1104/pp.109.139394 · Cited by 53 · see citing works
Rapid changes in amplification and methylation pattern of genomic DNA in cultured carrot root explants (Daucus carota L.)
Arnholdt‐Schmitt, B. (1993) · Theoretical and Applied Genetics · doi:10.1007/bf00225021 · Cited by 51 · see citing works
Self-citation
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Arnholdt‐Schmitt, B., Herterich, S., & Neumann, K. ‐. (1995) · Theoretical and Applied Genetics · doi:10.1007/bf00220964 · Cited by 46 · see citing works
Self-citation
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Macedo, E. S., Sircar, D., Cardoso, H. G., Peixe, A., & Arnholdt‐Schmitt, B. (2012) · Plant Cell Reports · doi:10.1007/s00299-012-1272-6 · Cited by 42 · see citing works
Self-citation
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Wajid, B., & Serpedin, E. (2014) · Briefings in Functional Genomics · doi:10.1093/bfgp/elu042 · Cited by 40 · see citing works
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Petrussa, E., Bertolini, A. M., Casolo, V., Krajňáková, J., Macrı̀, F., & Vianello, A. (2009) · Planta · doi:10.1007/s00425-009-1028-x · Cited by 39 · see citing works
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Albury, M. S., Dudley, P., Watts, F. Z., & Moore, A. L. (1996) · Journal of Biological Chemistry · doi:10.1074/jbc.271.29.17062 · Cited by 38 · see citing works
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Nakamura, K., Sakamoto, K., Kido, Y., Fujimoto, Y., Suzuki, T., Suzuki, M., Yabu, Y., Ohta, N., Tsuda, A., Onuma, M., et al. (2005) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2005.06.131 · Cited by 35 · see citing works
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Self-citation
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Self-citation
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Self-citation
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Frederico, A. M., Zavattieri, M. A., Campos, M. D., Cardoso, H. G., McDonald, A. E., & Arnholdt‐Schmitt, B. (2009) · Physiologia Plantarum · doi:10.1111/j.1399-3054.2009.01279.x · Cited by 23 · see citing works
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Efficient cell reprogramming as a target for functional‐marker strategies? Towards new perspectives in applied plant‐nutrition research
Arnholdt‐Schmitt, B. (2005) · Journal of Plant Nutrition and Soil Science · doi:10.1002/jpln.200420493 · Cited by 23 · see citing works
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Ultrastructural and biochemical development of the photosynthetic apparatus during callus induction in carrot root explants
Kumar, A., Bender, L., Pauler, B., Neumann, K. ‐., Senger, H., & Jeske, C. W. (1983) · Plant Cell Tissue and Organ Culture (PCTOC) · doi:10.1007/bf00043361 · Cited by 23 · see citing works
Specific Localization of the Respiratory Alternative Oxidase in Meristematic and Xylematic Tissues from Developing Soybean Roots and Hypocotyls
Hilal, M., Castagnaro, A. P., Moreno, H., & Massa, E. M. (1997) · PLANT PHYSIOLOGY · doi:10.1104/pp.115.4.1499 · Cited by 20 · see citing works
Calorespirometry, oxygen isotope analysis and functional-marker-assisted selection ('CalOxy-FMAS') for genotype screening: A novel concept and tool kit for predicting stable plant growth performance and functional marker identification
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Use of morphometric parameters for tracking ovule and microspore evolution in grapevine (Vitis vinifera L., cv. “Aragonez”) and evaluation of their potential to improve in vitro somatic embryogenesis efficiency from gametophyte tissues
Cardoso, H. G., Campos, M. C., Pais, M. S., & Peixe, A. (2010) · In Vitro Cellular & Developmental Biology - Plant · doi:10.1007/s11627-010-9295-6 · Cited by 18 · see citing works
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Do Mitochondria Play a Central Role in Stress-Induced Somatic Embryogenesis?
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Functional marker development is challenged by the ubiquity of endophytes--a practical perspective
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Calorespirometry as a tool for studying temperature response in carrot (Daucus carota L.)
Nogales, A., Muñoz‐Sanhueza, L., Hansen, L. D., & Arnholdt‐Schmitt, B. (2013) · Engineering in Life Sciences · doi:10.1002/elsc.201200197 · Cited by 12 · see citing works
Self-citation
Replication
Nagl, W. (1987) · Springer eBooks · doi:10.1007/978-3-642-73023-8_11 · Cited by 11 · see citing works
Sequential synthesis of some proteins in cultured carrot explant (Daucus carota) cells during callus induction
Gartenbach-Scharrer, U., Habib, S., & Neumann, K. ‐. (1990) · Plant Cell Tissue and Organ Culture (PCTOC) · doi:10.1007/bf00043695 · Cited by 9 · see citing works
On the physiology of yield production in carrots. - Implications for breeding towards nutrient efficiency
Arnholdt‐Schmitt, B. (1999) · European Journal of Horticultural Science · doi:10.1079/ejhs.1999/7099 · Cited by 7 · see citing works
Self-citation
From AOX diversity to functional marker development
Arnholdt‐Schmitt, B. (2015) · doi:10.1002/9781118789971.part2 · Cited by 6 · see citing works
Self-citation
Replication
Nagl, W. (1992) · Springer eBooks · doi:10.1007/978-3-642-77047-0_9 · Cited by 5 · see citing works
Metabolic heat and CO2 evolution rates measured by calorimetry during different in vitro induction processes of cineraria
Kim, G. H., Burger, D. W., Lieth, H., Choi, N. H., & Jeong, B. R. (2006) · Thermochimica Acta · doi:10.1016/j.tca.2006.04.015 · Cited by 3 · see citing works
Replication
Nagl, W. (1989) · Springer eBooks · doi:10.1007/978-3-642-75154-7_11 · Cited by 2 · see citing works
Functional marker development from AOX genes requires deep phenotyping and individualized diagnosis
Nogales, A., Noceda, C., Ragonezi, C., Cardoso, H., Campos, M. D., Frederico, A. M., Sircar, D., Kumar, S. R., Polidoros, A. N., Peixe, A., et al. (2015) · Portuguese National Funding Agency for Science, Research and Technology (RCAAP Project by FCT) · Cited by 2 · see citing works
Self-citation
Functional marker development from AOX genes requires deep phenotyping and individualized diagnosis
Nogales, A., Noceda, C., Ragonezi, C., Cardoso, H. G., Campos, M. D., Frederico, A. M., Sircar, D., Kumar, S. R., Polidoros, A. N., Peixe, A., et al. (2015) · doi:10.1002/9781118789971.ch16 · Cited by 2 · see citing works
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3 of the 97 references couldn’t be matched to a known paper.

Research works printed but not linked: 2

Arnholdt-Schmitt B. (1993b). Hormonsensitivitaet und Genomische DNS - Variabilitaet in Ihrem Bezug zur Ertragsbildung bei Daucus carota L. ssp. sativus: ein Beitrag zur Zellbiologie pflanzlichen Wachstums. Ph.D. thesis, Justus-Liebig-University Giessen Gießen.
Cardoso H. G. Nogales A. Frederico A. M. Svensson J. T. Macedo E. S. Valadas V. (2015). “Natural AOX gene diversity,” in Alternative Respiratory Pathways in Higher Plants eds Gupta K. J. Mur L. A. J. Neelwarne B. (Oxford: John Wiley) 241– 254.

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Guo, C., & Zhao, Y. (2020) · Genome Instability & Disease · doi:10.1007/s42764-020-00016-9 · Cited by 21 · see citing works
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Transcription of alternative oxidase (AOX) and plastid terminal oxidase (PTOX) during stress-regulated root tissue growth in Daucus carota L. - An approach to identify functional marker candidates for breeding on carrot yield stability
Campos, M. D. (2016) · Portuguese National Funding Agency for Science, Research and Technology (RCAAP Project by FCT)
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Alternative oxidase involvement in Daucus carota somatic embryogenesis
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Authors: Campos, M. D., Nogales, A., Cardoso, H. G., Kumar, S. R., Nobre, T., Sathishkumar, R., & Arnholdt-Schmitt, B.
Affiliations: University of Évora (PT)
Corresponding author: Cardoso, Hélia G.
ORCID: Campos, M. Doroteia
Nogales, Amaia
Cardoso, Hélia G.
Nobre, Tânia
Venue: Frontiers in Genetics
Publisher: Frontiers Media SA
Published: 2016-01-29
Volume: 7
Pages: 1-1
ISSN: 1664-8021 (ISSN-L)
DOI: 10.3389/fgene.2016.00001
PMC: PMC4731517
OpenAlex: W2253486968
Cited by: 152
References: 97
Citations by year: 2026: 1 · 2024: 1 · 2023: 1 · 2022: 6 · 2021: 27 · 2020: 30 · 2019: 28 · 2018: 23 · 2017: 31 · 2016: 4
FWCI: 14.90
Type: journal article
Language: en
Open access: gold
doi.org
Licence: cc-by
Locations: Frontiers in Genetics (publishedVersion, cc-by)
PubMed Central (publishedVersion, cc-by)
PubMed (publishedVersion)
DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
Funders: Fundação para a Ciência e a Tecnologia (SFRH/BD/65354/2009, Ciência 2007, Ciência 2008 (C2008-UE/ICAM/06), SFRH/BCC/52187/2013)
Topics: Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Plant tissue culture and regeneration
Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Stress Responses and Tolerance
Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant nutrient uptake and metabolism
Keywords: ascorbate oxidase, carrot, respiration rate, cellular reprogramming, lag phase, temperature effects, chilling stress, gene expression, genome sequence, root meristem, yield stability

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Stress-induced accumulation of DcAOX1 and DcAOX2a transcripts coincides with critical time point for structural biomass prediction in carrot primary cultures (Daucus carota L.).

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