The DOI matches its Crossref record; 110 of the 112 references it cites were found in a registry or an index.
Manipulating rumen microbiome and fermentation through interventions during early life: a review
Open accessAbstract
The nutritional manipulations of the rumen microbiome to enhance productivity and health are rather limited by the resilience of the ecosystem once established in the mature rumen. Based on recent studies, it has been suggested that the microbial colonization that occurs soon after birth opens a possibility of manipulation with potential to produce lasting effects into adult life. This paper presents the state-of-the-art in relation to early life nutritional interventions by addressing three areas: the development of the rumen as an organ in regards to the nutrition of the new-born, the main factors that determine the microbial population that first colonizes and establishes in the rumen, and the key immunity players that contribute to shaping the commensal microbiota in the early stage of life to understand host-microbiome specificity. The development of the rumen epithelium and muscularization are differently affected by the nature of the diet and special care should be taken with regards to transition from liquid (milk) to solid feed. The rumen is quickly colonized by all type of microorganisms straight after birth and the colonization pattern may be influenced by several factors such as presence/absence of adult animals, the first solid diet provided, and the inclusion of compounds that prevent/facilitate the establishment of some microorganisms or the direct inoculation of specific strains. The results presented show how early life events may be related to the microbial community structure and/or the rumen activity in the animals post-weaning. This would create differences in adaptive capacity due to different early life experiences and leads to the idea of microbial programming. However, many elements need to be further studied such as: the most sensitive window of time for interventions, the best means to test long term effectiveness, the role of key microbial groups and host-immune regulations.
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“A better understanding of the roles played by the constituent microbes is central to the development of advanced methods to manipulate the rumen microbiome in a manner that improves ruminant production whilst reducing environmental impact (Yáñez-Ruiz et al., 2015).”
From Addressing global ruminant agricultural challenges through understanding the rumen microbiome: past, present, and future (2018) · cites this paper as Yáñez-Ruiz et al., 2015
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“It is important to note that although the rumen microbiome establishes before intake of solid feeds, the type of feed consumed plays a significant role in shaping the established rumen microbiome.”
From Addressing global ruminant agricultural challenges through understanding the rumen microbiome: past, present, and future (2018) · cites this paper as Yáñez-Ruiz et al., 2015
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“The instability occurring during this period potentially allows for manipulation to assemble a specific community composition that persist later in life for better health and productivity within a given production system (Yáñez-Ruiz et al., 2015).”
From Addressing global ruminant agricultural challenges through understanding the rumen microbiome: past, present, and future (2018) · cites this paper as Yáñez-Ruiz et al., 2015
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Cites
Interactions Between the Microbiota and the Immune System
Hooper, L. V., Littman, D. R., & Macpherson, A. J. (2012) · Science · doi:10.1126/science.1223490 · Cited by 4,173
The impact of the gut microbiota on human health: an integrative view
Clemente, J. C., Ursell, L. K., Parfrey, L. W., & Knight, R. (2012) · Cell · doi:10.1016/j.cell.2012.01.035 · Cited by 3,710
The Long-Term Stability of the Human Gut Microbiota
Faith, J. J., Guruge, J. L., Charbonneau, M., Subramanian, S., Seedorf, H., Goodman, A. L., Clemente, J. C., Knight, R., Heath, A. C., Leibel, R. L., et al. (2013) · Science · doi:10.1126/science.1237439 · Cited by 2,058
The role of gut microbiota in immune homeostasis and autoimmunity
Wu, H.-J., & Wu, E. (2012) · Gut Microbes · doi:10.4161/gmic.19320 · Cited by 1,426
The Ruminant Animal: Digestive Physiology and Nutrition
Church, D. C. (1988) · Medical Entomology and Zoology · Cited by 1,386
BOARD-INVITED REVIEW: Intrauterine growth retardation: Implications for the animal sciences1
Wu, G., Bazer, F. W., Wallace, J. M., & Spencer, T. E. (2006) · Journal of Animal Science · doi:10.2527/jas.2006-156 · Cited by 1,224
Exploring the bovine rumen bacterial community from birth to adulthood
Jami, E., Israel, A., Kotser, A., & Mizrahi, I. (2013) · The ISME Journal · doi:10.1038/ismej.2013.2 · Cited by 963
Social influences on foraging in vertebrates: causal mechanisms and adaptive functions
Galef, B. G., & Giraldeau, L. (2001) · Animal Behaviour · doi:10.1006/anbe.2000.1557 · Cited by 743
Williams, A. G., & Coleman, G. S. (1991) · Cited by 677
Rumen Development, Intestinal Growth and Hepatic Metabolism In The Pre- and Postweaning Ruminant
Baldwin, R. L., McLeod, K. R., Klotz, J. L., & Heitmann, R. N. (2004) · Journal of Dairy Science · doi:10.3168/jds.s0022-0302(04)70061-2 · Cited by 654
Flagged first, then by citations
2 of the 112 references couldn’t be matched to a known paper.
Research works printed but not linked: 6
- Davis, 1998, The Development, Nutrition, and Management of the Young Calf.
- Dehority, 2003, Rumen Microbiology.
- Landy, 1964, Natural antibodies against gram negative bacteria, Bacterial Endotoxins
- Nakanishi, 1993, Effects of feeding Lactobacillus acidophilus yogurt on performance and behavior of dairy calves., J. Dairy Sci., 76, 244
- Strelkov, 1933, Uber die infektionswege der im pansen und in der haube der Wiederkauer befindlichen insorien., Arch. Tierernahr. Tierz., 9, 679
- Theodorou, 1990, The effect of a fungal probiotic on intake and performance in early weaned lambs., Anim. Prod., 53
Cited by
Sorted by citations
Items 301–343 of 343
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Mariadassou, M., Nouvel, L., Constant, F., Morgavi, D., Rault, L., Barbey, S., Helloin, E., Rué, O., Schbath, S., Launay, F., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26596745
Mariadassou, M., Nouvel, L., Constant, F., Morgavi, D., Rault, L., Barbey, S., Helloin, E., Rué, O., Schbath, S., Launay, F., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26596715
Mariadassou, M., Nouvel, L., Constant, F., Morgavi, D., Rault, L., Barbey, S., Helloin, E., Rué, O., Schbath, S., Launay, F., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26596739
Wang, D., Chen, L., Tang, G., Yu, J., Chen, J., Li, Z., Cao, Y., Lei, X., Deng, L., Wu, S., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26620876
Peña‐Cearra, A., Belanche, A., González-Lopez, M., Lavín, J. L., Pascual-Itoiz, M. Á., Jiménez, E., Rodrı́guez, H., Aransay, A. M., Anguíta, J., Yáñez-Ruiz, D. R., et al. (2021) · Figshare · doi:10.6084/m9.figshare.14418270
Self-citationMariadassou, M., Nouvel, L., Constant, F., Morgavi, D., Rault, L., Barbey, S., Helloin, E., Rué, O., Schbath, S., Launay, F., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26596733
Mariadassou, M., Nouvel, L., Constant, F., Morgavi, D., Rault, L., Barbey, S., Helloin, E., Rué, O., Schbath, S., Launay, F., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26596736
Wang, D., Chen, L., Tang, G., Yu, J., Chen, J., Li, Z., Cao, Y., Lei, X., Deng, L., Wu, S., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26620873
Peña‐Cearra, A., Belanche, A., González-Lopez, M., Lavín, J. L., Pascual-Itoiz, M. Á., Jiménez, E., Rodrı́guez, H., Aransay, A. M., Anguíta, J., Yáñez-Ruiz, D. R., et al. (2021) · Figshare · doi:10.6084/m9.figshare.14418273
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Mariadassou, M., Nouvel, L., Constant, F., Morgavi, D., Rault, L., Barbey, S., Helloin, E., Rué, O., Schbath, S., Launay, F., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26596742
Mariadassou, M., Nouvel, L., Constant, F., Morgavi, D., Rault, L., Barbey, S., Helloin, E., Rué, O., Schbath, S., Launay, F., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26596727
Sun, D., Yin, Y., Guo, C., Liu, L., Mao, S., Zhu, W., & Liu, J. (2021) · Figshare · doi:10.6084/m9.figshare.14190120
Dunière, L., Ruiz, P., Lebbaoui, Y., Guillot, L., Bernard, M., Forano, É., & Chaucheyras-Durand, F. (2023) · Figshare · doi:10.6084/m9.figshare.23700591
Mariadassou, M., Nouvel, L., Constant, F., Morgavi, D., Rault, L., Barbey, S., Helloin, E., Rué, O., Schbath, S., Launay, F., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26596724
Palma‐Hidalgo, J. M., Jiménez, E., Popova, M., Morgavi, D., Martín-García, A. I., Yáñez-Ruiz, D. R., & Belanche, A. (2021) · Figshare · doi:10.6084/m9.figshare.13612239
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Mariadassou, M., Nouvel, L., Constant, F., Morgavi, D., Rault, L., Barbey, S., Helloin, E., Rué, O., Schbath, S., Launay, F., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26596718
Kumar, S., Khan, M. A., Beijer, E., Liu, J., Lowe, K. K., Young, W., Mills, D. A., & Moon, C. D. (2021) · Figshare · doi:10.6084/m9.figshare.14361446
Mariadassou, M., Nouvel, L., Constant, F., Morgavi, D., Rault, L., Barbey, S., Helloin, E., Rué, O., Schbath, S., Launay, F., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26596721
Mammeri, M., Obregon, D., Chevillot, A., Abuin‐Denis, L., Skičková, Š., Kratou, M., Chuang, A. W., Maître, A., Julien, C., Polack, B., et al. (2026) · Veterinary Parasitology · doi:10.1016/j.vetpar.2026.110729
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Gravouil, K. (2019) · theses.fr (ABES) · doi:10.70675/d91a3321z646fz4691zb1f5z1e5039b15385
Corrigan, A., Stockdale, S. R., Mackenzie, A. M., WILKINSON, R. G., Warren, H. E., Taylor-Pickard, J. A., & Murphy, R. A. (2026) · Animals · doi:10.3390/ani16081137
Tang, W., Wang, P., Jiang, T., Chen, N., Xue, M., Chen, Y., Pang, R., Zhang, J., Wang, R., Wang, Q., et al. (2026) · BMC Microbiology · doi:10.1186/s12866-026-05109-1
Zhu, L., Wang, M., Zhang, X., Dou, T., Hua, H., Tang, X., Niu, X., Kou, Q., Chen, Y., Pan, M., et al. (2026) · Applied and Environmental Microbiology · doi:10.1128/aem.02421-25
Wei, W., Ouyang, K., Qu, M., & Qiu, Q. (2026) · Animal Feed Science and Technology · doi:10.1016/j.anifeedsci.2026.116870
Xu, Q., Zhang, X., Tian, H., Yang, X., Zhang, J. X., Li, H., Ma, Z., Zhang, D., Huang, K., Zhang, Y., et al. (2026) · Animal Bioscience · doi:10.5713/ab.260317
Tang, Z., Zhang, S., Xu, P., Tang, H., Gao, W., Cao, Y., Zhai, R., & Chen, K. (2026) · Animals · doi:10.3390/ani16111728
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Muñoz‐Grein, J., Chekikene, A. H., Graikini, D., Sánchez, L., Fondevila, M., & Belanche, A. (2026) · Animals · doi:10.3390/ani16121761
Adam, C., Berkhout, M., Neachtain, A. S. Ó., Kour, H., Williams, S. R. O., Jacobs, J. L., & Marett, L. C. (2026) · Animal Production Science · doi:10.1071/an26013
Zhou, Y., Yuan, J., Bie, X., Wang, D. B., Zhang, Z., Liu, S., & Cui, Z. (2026) · BMC Veterinary Research · doi:10.1186/s12917-026-05757-5
Vourlaki, I., Furman, O., Tapio, I., Guan, L. L., Waters, S. M., Kenny, D. A., Smith, P., Kirwan, S. F., Kelly, D. N., Evans, R., et al. (2026) · The ISME Journal · doi:10.1093/ismejo/wrag185
Sato, Y., Uda, Y., & Nagao, Y. (2026) · Microbiology Spectrum · doi:10.1128/spectrum.01677-26
Atalla, A. G., & Abdelmalek, S. (2026) · Environmental Sciences Europe · doi:10.1186/s12302-026-01476-8
Zhang, X., Wang, Y., & Ren, Q. (2026) · Animal Feed Science and Technology · doi:10.1016/j.anifeedsci.2026.116974
Zhang, S., Tang, Z., Ding, Y., Xu, P., Yimamu, M., & Chen, K.-X. (2026) · Frontiers in Microbiology · doi:10.3389/fmicb.2026.1899537
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Petri, R. M., Ricci, S., Jelinski, M. D., & Hund, A. (2026) · Veterinary Research Communications · doi:10.1007/s11259-026-11526-4
Metadata
- Authors
- Yáñez-Ruiz, D. R., Abecia, L., & Newbold, C. J.
- Affiliations
- Consejo Superior de Investigaciones Científicas (ES)
- Aberystwyth University (GB)
- Venue
- Frontiers in Microbiology
- Publisher
- Frontiers Media SA
- Published
- 2015-10-14
- Volume
- 6
- Pages
- 1133-1133
- ISSN
- 1664-302X (ISSN-L)
- PMC
- PMC4604304
- OpenAlex
- W1894193924
- Cited by
- 336
- References
- 112
- Citations by year
- 2026: 25 · 2025: 36 · 2024: 38 · 2023: 30 · 2022: 36 · 2021: 46 · 2020: 38 · 2019: 35 · 2018: 27 · 2017: 18 · 2016: 6 · 2015: 1
- FWCI
- 3.02
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- cc-by
- Locations
- Frontiers in Microbiology (publishedVersion, cc-by)
- Europe PMC (PubMed Central) (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- DIGITAL.CSIC (Spanish National Research Council (CSIC)) (submittedVersion, cc-by)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion)
- Funders
- Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria
- Department for Environment, Food and Rural Affairs, UK Government
- Directorate for Biological Sciences
- Biotechnology and Biological Sciences Research Council (BBS/E/W/10964A01B, BB/J0013/1, grant number BB/J0013/1)
- Topics
- Life Sciences › Agricultural and Biological Sciences › Animal Science and Zoology › Ruminant Nutrition and Digestive Physiology
- Life Sciences › Agricultural and Biological Sciences › Animal Science and Zoology › Animal Nutrition and Physiology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Keywords
- rumen microbiome, rumen development, rumen epithelium, microbial colonization, host-microbiome interactions, immunity, weaning, direct inoculation, ruminant nutrition
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