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Research progress on the role of microbiota in the pathogenesis of gallstone disease

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Gut microbiome dysbiosis in hepatocellular carcinoma patients with persistent HCV viremia versus viral clearance: a cross-sectional study

Hashem, H. R., Yehia, T., Azab, M., Abdellah, A., Amin, I. A., Salah, M., & Ramadan, M. (2025) · Gut Pathogens · doi:10.1186/s13099-025-00761-w · Cited by 7 · see citing works

Microbiota metabolism and immune regulation: From mechanisms to immunotherapeutic applications in cancer

Yuan, S., Bremmer, A., Yang, X., & Hu, Q. (2025) · Seminars in Cancer Biology · doi:10.1016/j.semcancer.2025.11.023 · Cited by 6 · see citing works

Prolonged storage reduces viability of Peptacetobacter (Clostridium) hiranonis and core intestinal bacteria in fecal microbiota transplantation preparations for dogs

Lopes, B. C., Turck, J. L., Tolbert, M. K., Giaretta, P. R., Suchodolski, J. S., & Pilla, R. (2025) · Frontiers in Microbiology · doi:10.3389/fmicb.2024.1502452 · Cited by 5 · see citing works

Biomarker Quantification of Gut Dysbiosis-Derived Inflammation: A Review

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Gut microbial bile salt hydrolase as a metabolic gatekeeper in digestive homeostasis and disease

Chu, H., Song, X., Liu, C., Ma, T., & Cui, W. (2026) · Frontiers in Immunology · doi:10.3389/fimmu.2026.1870619 · Cited by 5 · see citing works

A native bacterial consortium degrades estriol in domestic sewage and activated sludge via the 4,5- seco pathway and requires estriol to retain its biodegradation phenotype

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Clostridium scindens exacerbates experimental necrotizing enterocolitis via upregulation of the apical sodium-dependent bile acid transporter

Calton, C. M., Carothers, K. E., Ramamurthy, S., Jagadish, N., Phanindra, B., Garcia, A., Viswanathan, V. K., & Halpern, M. D. (2023) · American Journal of Physiology-Gastrointestinal and Liver Physiology · doi:10.1152/ajpgi.00102.2023 · Cited by 5 · see citing works

Magnesium and LongevityPreprint

Chambers, P. W. (2024) · Qeios · doi:10.32388/n1scbr.2 · Cited by 5 · see citing works

Disruption of the gut bile acid-microbiota axis precedes severe bronchopulmonary dysplasia in preterm infants

Yu, H., Guo, Y., Li, J., Fu, R., Zhang, Y., & Guo, W. (2025) · Frontiers in Microbiology · doi:10.3389/fmicb.2025.1705965 · Cited by 4 · see citing works

Common Features of Environmental Mycobacterium chelonae from Colorado Using Partial and Whole Genomic Sequence Analyses

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Cooked Bean (Phaseolus vulgaris L.) Consumption Alters Bile Acid Metabolism in a Mouse Model of Diet-Induced Metabolic Dysfunction: Proof-of-Concept Investigation

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The impact of diet and gut microbiota on development, treatment, and prognosis in prostate cancer

Liu, G., Yang, F., Song, W., & Hou, R. (2025) · Frontiers in Nutrition · doi:10.3389/fnut.2025.1621389 · Cited by 3 · see citing works

Modulating the gut-reproductive tract axis: microbial influence on gynaecological cancer pathogenesis and treatment

Chen, X., Zuo, Z., Xiao, B., & Zhao, F. (2026) · Gut · doi:10.1136/gutjnl-2025-337778 · Cited by 4 · see citing works

Gut Microbiota–Bile Acid Axis in Type 2 Diabetes–Associated Gallbladder Diseases: Mechanisms and Therapeutic Potential

Zhang, Q., & Jin, Z. (2026) · Metabolites · doi:10.3390/metabo16030212 · Cited by 3 · see citing works

Alcohol-related liver disease disrupts bile acid homeostasis and gut microbial bile acid metabolism

Keller, M. I., de Zawadzki, A., Thiele, M. S., Suvitaival, T., Sulek, K., Kuhn, M., Schudoma, C., Podlesny, D., Nishijima, S., Fullam, A., et al. (2026) · JHEP Reports · doi:10.1016/j.jhepr.2026.101848 · Cited by 3 · see citing works

Oxysterols and bile acids - From intertwined biosynthesis to combined quantification

Roumain, M., & Muccioli, G. G. (2026) · Progress in Lipid Research · doi:10.1016/j.plipres.2026.101385 · Cited by 3 · see citing works

Mechanisms by which complex carbohydrates influence immune imbalance in COPD via the gut–lung axis: from colonic fermentation to pulmonary immune responses

Chen, G., Chen, Y., Chu, C., & Zhu, X. (2026) · Frontiers in Nutrition · doi:10.3389/fnut.2026.1833070 · Cited by 3 · see citing works

Single-cell encapsulation of Agathobacter rectalis in aloe vera gel alleviates DSS-induced colitis by remodeling the gut microbiota-metabolite axis

Li, J., Fang, X., Chen, J., Xu, Y.-G., Li, Z.-S., Du, Y.-Q., & Hou, W. (2026) · TransMed · doi:10.1016/j.tmed.2026.100018 · Cited by 3 · see citing works

A Screening Assay for Bile Acid-Transforming Microorganisms Using Engineered Bacterial Biosensors

Dallera, D., Pastorelli, D., Bellato, M., Chiacchiera, A. F., Usai, F., Angelis, M. G. C. D., Brun, P., Magni, P., & Pasotti, L. (2025) · Biosensors · doi:10.3390/bios15110716 · Cited by 2 · see citing works

Gut microbiota and metabolite profiles in thyroid cancer lymph node metastasis: a multi-omics analysis

Xu, D., Chen, J., Shi, Y., & Jiang, X. (2025) · Scientific Reports · doi:10.1038/s41598-025-24397-7 · Cited by 2 · see citing works

L. acidophilus prevents cholesterol gallstones in mice by regulating gut microbiota-mediated BAs metabolism and cholesterol homeostasis

Du, M., Ye, L., Wang, C., Jiang, T., & Liu, F. (2026) · Journal of Functional Foods · doi:10.1016/j.jff.2026.107194 · Cited by 2 · see citing works

Multi‐Target Mechanisms of Whey Protein Against NAFLD : Integrating Bile Acid Metabolism, Gut Microbiota and Hepatic Inflammation

Xu, D., Qiu, B., Dong, X., Tan, J., Xie, Y., Wan, Y., Chu, C., Miao, C., Ali, A. M. M., Chen, M., et al. (2026) · Food Science & Nutrition · doi:10.1002/fsn3.71655 · Cited by 2 · see citing works

Gut microbiota shifts in spaceflight: a case study evidence and countermeasures for microbial homeostasis

Seenivasan, R., Pachiyappan, J. K., Marimuthu, A., Halagali, P., Kuppusamy, G., Nayak, P. G., & Tippavajhala, V. K. (2026) · 3 Biotech · doi:10.1007/s13205-026-04760-9 · Cited by 2 · see citing works

Molecular Mechanisms of Gut Microbiota–Immune System Crosstalk: From Mucosal Architecture to Adaptive Immunity Programming

Ciaușu-Sliwa, D., Capotă, R., Bostănaru, A.-C., Năstasă, V., & Mareș, M. (2026) · International Journal of Molecular Sciences · doi:10.3390/ijms27146246 · Cited by 2 · see citing works

Gut microbiota and iron homeostasis: implications for glycemic control

Rodrigues, I. G., Moreno‐Navarrete, J. M., & Fernández‐Real, J. M. (2025) · Minerva Medica · doi:10.23736/s0026-4806.25.09706-x · Cited by 1 · see citing works

Host-microbe co-metabolism system as potential targets: the promising way for natural medicine to treat atherosclerosis

Wang, Y., Zhou, Z., Hao, H., & Cao, L. (2025) · Chinese Journal of Natural Medicines · doi:10.1016/s1875-5364(25)60909-5 · Cited by 1 · see citing works

Fluazinam Caused Liver Metabolism Disorders and Intestinal Inflammation by Affecting Gut–Liver Axis in Mice

He, B., Xiong, Y., Sun, M., Xiao, S., Cao, Y., Yang, J., Shi, X., Liu, X., Liu, D., & Pu, W. A. N. G. (2026) · Journal of Agricultural and Food Chemistry · doi:10.1021/acs.jafc.5c14080 · Cited by 1 · see citing works

Bioconversion of cholic acid into deoxycholic acid by a multi-enzyme catalytic system

Ma, X., Du, Z., Zhang, T., Chen, Y., Tang, W., Yi, D., & Liu, Y. (2026) · Bioorganic Chemistry · doi:10.1016/j.bioorg.2026.109824 · Cited by 1 · see citing works

The emerging role of the Hippo signaling pathway in interorgan crosstalk

Song, G., Lee, C., & Jho, E. (2026) · The FEBS Journal · doi:10.1111/febs.70587 · Cited by 1 · see citing works

Extracellular vesicles as indicators of environmental stress response in Lactiplantibacillus plantarum

Razim, A., Laimer-Digruber, A., Schmid, A. M., Edelbacher, T. V., Paschall, M. E., Weinmayer, T., Thaler, M., Kebreab, R., Skalska, M., Migdał, P., et al. (2026) · Extracellular Vesicles and Circulating Nucleic Acids · doi:10.20517/evcna.2026.26 · Cited by 1 · see citing works

Gut–bone axis in rheumatoid arthritis: microbiota-driven barrier dysfunction, immune crosstalk, and therapeutic strategies

Hu, Z., Yan, J., Wang, X., & Liu, Z. (2026) · Antonie van Leeuwenhoek · doi:10.1007/s10482-026-02353-3 · Cited by 1 · see citing works

6:2 Chlorinated Polyfluoroalkyl Ether Sulfonate Exposure Disrupts the Gut-Liver Axis and Induces Inflammatory-Dominant Hepatotoxicity via Bile Acid-Farnesoid X Receptor Signaling

Zhang, J., Tang, J., Xie, W., Zhang, Y., He, Y., Lin, Z., & Cai, Z. (2026) · Environmental Science & Technology · doi:10.1021/acs.est.6c09647 · Cited by 1 · see citing works

Extracellular vesicles as indicators of environmental stress response in Lactiplantibacillus plantarum : a multi-platform studyPreprint

Razim, A., Laimer-Digruber, A., Schmid, A. M., Edelbacher, T. V., Paschal, M. E., Weinmayer, T., Thaler, M., Skalska, M., Migdał, P., Morandi, M. I., et al. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.11.21.689665 · Cited by 1 · see citing works

Magnesium and LongevityPreprint

Chambers, P. W. (2024) · Qeios · doi:10.32388/n1scbr · Cited by 4 · see citing works

Intestinal microbiota of indigenous peoples of the North: a systematic review

Sivtseva, T. M., Stepanova, M. A., Николаевна, З. Р., Semenov, S., & Осаковский, В. Л. (2025) · Экология человека · doi:10.17816/humeco634678

Probiotics: Immune Responses and Gut Microbiome

Ajay, M., Navaneethan, A., Ramachandran, V., Gnanasampanthapandian, D., & Palaniyandi, K. (2024) · Springer eBooks · doi:10.1007/978-981-96-0297-1_9

Alcohol-related liver disease disrupts bile acid synthesis and is associated with compensatory gut microbiota changesPreprint

Keller, M. I., de Zawadzki, A., Thiele, M. S., Suvitaival, T., Sulek, K., Kuhn, M., Schudoma, C., Podlesny, D., Nishijima, S., Fullam, A., et al. (2025) · medRxiv · doi:10.1101/2025.07.23.25332046

Investigating the mechanism of Jiawei Xiaoyao San in treating metabolic associated fatty liver disease (MAFLD) based on the ileal microbiota-bile acid-FXR axis

Wei, T., Dai, G., Liu, T., & Tian, Y. (2025) · Advances in Integrative Medicine · doi:10.1016/j.aimed.2025.100567

Unravelling three-way interactions between Clostridioides difficile, microbiota and the host

Bywater-Brenna, K. K., & Unnikrishnan, M. (2025) · Journal of Medical Microbiology · doi:10.1099/jmm.0.002067

Early-Life Demographic Factors Shape Gut Microbiome Patterns Associated with Rotavirus Gastroenteritis Severity

Abdelbary, E. R., Ramadan, M., Amin, I. A., Abd-Elsamea, F. S., Elsaghier, A. M., Abd-Alrahman, E., Ozbak, H. A., Hemeg, H. A., Almutawif, Y. A., Zakai, S. A., et al. (2025) · Viruses · doi:10.3390/v17121542 · Cited by 1 · see citing works

Yacon ( Smallanthus sonchifoliu s) Root Increases Bowel Movement Frequency in Healthy Adults via Modulating Gut Microbiota and Intestinal Metabolites: A Pilot Study

Pan, L., Hu, W.-F., Fu, Z., Yu, X., Li, Z., Guo, M., Wu, J., & Zhu, H. (2025) · Molecular Nutrition & Food Research · doi:10.1002/mnfr.70358

Microbiome and metabolome patterns centered on cancer cachexia link skeletal muscle and adipose tissue depletion to clinical outcomes in locally advanced rectal cancer

Kuang, Z., Zhan, Q., Tu, J., Li, A., Guo, W., Zheng, R., Jiang, H., & Xu, B. (2026) · BMC Microbiology · doi:10.1186/s12866-026-05171-9

Ultrasound-assisted pectin extraction from ‘Lane Late’ navel orange: RSM optimization, structural identification and anti-alcoholic liver injury potential

Gao, R., Han, B., Ma, J., Fu, H., Liu, Y., Liu, Y., Pang, Y., Liao, M., 杨光忠, 鞠, 熀., et al. (2026) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2026.153381

Metabolic and endocrine modulation of the gut-adipose tissue axis via pro-, pre-, and postbiotics in overweight dogs: A systematic review

Southwell, M., Faraco, M., Ruiz, M. J., Romanelli, A., & Sagües, M. F. (2026) · Domestic Animal Endocrinology · doi:10.1016/j.domaniend.2026.107044

Bile acid-axis dysregulation in MASLD/MASH progression: from metabolic mismatch to inflammatory-fibrotic remodeling

Du, Y., Qi, L., Shi, Y., Huang, X., Shi, X., Liu, M., Fang, Y., & Hu, X. (2026) · Frontiers in Medicine · doi:10.3389/fmed.2026.1912000

Potential mechanisms by which microbiota-accessible carbohydrates regulate hepatic lipid metabolism in MAFLD via the gut-liver axis

Peng, J., Gao, X., Chen, G., Yan, A., Yu, Q., Tian, W., & Cai, K. (2026) · Frontiers in Microbiology · doi:10.3389/fmicb.2026.1898227

Impact of Infant Feeding Mode on Gut Microbiome Composition in Early Life: Evidence from an Egyptian Cohort

ELHindi, S., Abdalla, S., Azab, M., & Bendary, M. M. (2026) · Scientific Reports · doi:10.1038/s41598-026-66403-6

Microbial remodeling of bile acids: emerging engineering strategies for precision fermentation and functional food innovation

Lee, G. W., Song, H. Y., Kim, B. M., Hwang, I. Y., & Lee, J. W. (2026) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2026.103572

Antibiotic-induced gut microbiota dysbiosis and bile acid metabolism: implications for intestinal health, immune regulation, and disease susceptibility

AlRamadneh, T. N., Rizaev, J., Hanumanthayya, M., Al-Hussein, M. A., Mutee, A. F., Buriev, M., Jumaniyazova, N., & Shefali (2026) · Frontiers in Microbiology · doi:10.3389/fmicb.2026.1918510

The Bile Acid–Diet–Microbiome Axis in Clostridioides difficile Infection

Trofin, F., Buzilă, E. R., Iancu, I. R., Tuchiluş, C., Temneanu, O. R., Iancu, L. S., Vlad, M. A., Anton-Păduraru, D.-T., Armașu, I., Bădescu, A. C., et al. (2026) · Nutrients · doi:10.3390/nu18172872

Ketogenic diet combined with probiotics for polyendocrine metabolic ovarian syndrome: research progress from the perspective of the gut microbiota–host metabolic axis

Yang, Y., Dai, F., He, X., Zhao, P., & Chen, Q. (2026) · Frontiers in Nutrition · doi:10.3389/fnut.2026.1945464

The role of lysine acylation in metabolic dysregulation and inflammatory responses within the hepatic immune microenvironment of MASLD

Peng, J., Yan, A., Chen, G., Gao, X., Yu, Q., Tian, W., & Cai, K. (2026) · Frontiers in Immunology · doi:10.3389/fimmu.2026.1933792

Toxoplasma gondii infection disrupts secondary bile acid transformation in feline gut microbiota

Tang, L.-Y., Zhang, H., Zhao, J., Gao, Y., Zhang, X., Xie, S.-C., Zheng, Z., Zhu, X., Zhang, X., Xia, C., et al. (2026) · Applied and Environmental Microbiology · doi:10.1128/aem.00674-26

Chronic arsenic–fluoride co-exposure impairs spermatogenesis with gut microbiota–associated bile acid and lipid metabolic remodeling

Chen, J., Cui, Y., Wang, Y., Kong, R., Liu, P., Su, Q., Li, Y., Guo, H., Fu, Y., Zhao, Q., et al. (2026) · Environment International · doi:10.1016/j.envint.2026.110520

Mesenchymal Stem Cells and their Exosomes: Targeting Gut Microbiota Inflammation to Reverse Insulin Resistance

Cai, Z., Wen, X., Wu, H., & Luo, Y. (2026) · Clinical & Translational Metabolism · doi:10.1007/s12018-026-09337-x

Alcalase-hydrolyzed casein peptides after simulated gastrointestinal digestion alleviate high-fat diet-induced metabolic dysfunction in mice

Mo, L., Zhao, C., Wang, T., Xu, W., Deng, Y., Yu, Y., & Zeng, X. (2026) · Frontiers in Nutrition · doi:10.3389/fnut.2026.1960914

Molecular Mechanisms of the Gut–Liver–Placenta Axis in Intrahepatic Cholestasis of Pregnancy: Microbiota-Associated Pathogenesis and Next-Generation Therapeutic Strategies

Liu, N., Zhang, S., & Li, Y. (2026) · International Journal of Molecular Sciences · doi:10.3390/ijms27198481

Expanding bile acid diversity via host and microbial conjugation pathways

Won, T. H., & Schroeder, F. C. (2026) · Natural Product Reports · doi:10.1039/d6np00058d

Nutrition as a Keystone of Balanced Physiology—Harnessing Human and Microbial Metabolic Synergy

Kumar, S., & Spiteri, C. (2026) · Advances in predictive, preventive and personalised medicine · doi:10.1007/978-3-032-32838-0_10

Lactobacillus gasseri LG-G12 Alleviates High-Fat Diet-induced Obesity through Gut Microbiota-Bile Acid Axis

Luo, Y., Wu, S., Li, J., Ren, L., Jia, W., Mingxin, Y., Ouyang, D., Yun, L., He, F., & Cheng, R. (2026) · Journal of Agricultural and Food Chemistry · doi:10.1021/acs.jafc.6c03437

Immunomodulatory mechanisms of gut microbiota-derived metabolites in non-small cell lung cancer: a gut–lung axis perspective

Ye, S., Tian, T., Huangfu, J., Liu, H., Liu, P., & Zhou, J. (2026) · Frontiers in Immunology · doi:10.3389/fimmu.2026.1999117

Identification and Characterization of Major Bile Acid 7α-Dehydroxylating Bacteria in the Human Gut

Kim, K. H., Park, D., Jia, B., Baek, J. H., Hahn, Y., & Jeon, C. O. (2022) · mSystems · doi:10.1128/msystems.00455-22 · Cited by 60 · see citing works

Biogeography and biochemistry of bile acid 7-dehydroxylation in the mammalian gut

Marion, S. (2020) · Infoscience (Ecole Polytechnique Fédérale de Lausanne) · doi:10.5075/epfl-thesis-7350

268-LB: Dietary Resistant Starch Supplementation Upregulates Deoxycholic Acid Production in Mice

Reuter, M. A., Tucker, M., Marfori, Z., Shishani, R., Bustamante, J. M., Moreno, R., & Cummings, B. P. (2023) · Diabetes · doi:10.2337/db23-268-lb

The bile acid-gut microbiota axis: A central hub for physiological regulation and a novel therapeutic target for metabolic diseases

Zhao, M., Jiafeng, Z., Yang, H., Ouyang, Z., Lv, C., Geng, Z., & Zhao, J. (2025) · Biomedicine & Pharmacotherapy · doi:10.1016/j.biopha.2025.118182 · Cited by 62 · see citing works

Novel Approaches in Glucose and Lipid Metabolism Disorder Therapy: Targeting the Gut Microbiota–Bile Acid Axis

Jiang, J., Zhang, H., Hussain, M., Abdullah, Feng, F., Guan, R., & Zhong, H. (2025) · Biology · doi:10.3390/biology14070802 · Cited by 26 · see citing works