Cited by 90

The DOI matches its Crossref record; 4 of the 4 references it cites were found in a registry or an index.

Generation of an ICF Syndrome Model by Efficient Genome Editing of Human Induced Pluripotent Stem Cells Using the CRISPR System

Horii, Takuro, Tamura, Daiki, Morita, Sumiyo, Kimura, Mika, Hatada, Izuho·2013·International Journal of Molecular Sciences

Abstract

Genome manipulation of human induced pluripotent stem (iPS) cells is essential to achieve their full potential as tools for regenerative medicine. To date, however, gene targeting in human pluripotent stem cells (hPSCs) has proven to be extremely difficult. Recently, an efficient genome manipulation technology using the RNA-guided DNase Cas9, the clustered regularly interspaced short palindromic repeats (CRISPR) system, has been developed. Here we report the efficient generation of an iPS cell model for immunodeficiency, centromeric region instability, facial anomalies syndrome (ICF) syndrome using the CRISPR system. We obtained iPS cells with mutations in both alleles of DNA methyltransferase 3B (DNMT3B) in 63% of transfected clones. Our data suggest that the CRISPR system is highly efficient and useful for genome engineering of human iPS cells.

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.3390/ijms141019774

Cites

4 of 4 references verified0 citation errors · 0 not checkable

Statistics

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

Cites

Flagged first, then by citations

Show all 4 references

Research works printed but not linked: 21

  1. Takahashi, 2007, Induction of pluripotent stem cells from adult human fibroblasts by defined factors, Cell, 131, 861, 10.1016/j.cell.2007.11.019 · DOI · Paper page
  2. Zwaka, 2003, Homologous recombination in human embryonic stem cells, Nat. Biotechnol, 21, 319, 10.1038/nbt788 · DOI
  3. Hockemeyer, 2009, Efficient targeting of expressed and silent genes in human escs and ipscs using zinc-finger nucleases, Nat. Biotechnol, 27, 851, 10.1038/nbt.1562 · DOI
  4. Hockemeyer, 2011, Genetic engineering of human pluripotent cells using tale nucleases, Nat. Biotechnol, 29, 731, 10.1038/nbt.1927 · DOI
  5. Zou, 2009, Gene targeting of a disease-related gene in human induced pluripotent stem and embryonic stem cells, Cell Stem Cell, 5, 97, 10.1016/j.stem.2009.05.023 · DOI
  6. Cho, 2013, Targeted genome engineering in human cells with the Cas9 RNA-guided endonuclease, Nat. Biotechnol, 31, 230, 10.1038/nbt.2507 · DOI · Paper page
  7. Cong, 2013, Multiplex genome engineering using CRISPR/Cas systems, Science, 339, 819, 10.1126/science.1231143 · DOI · Paper page
  8. Jinek, M., East, A., Cheng, A., Lin, S., Ma, E., and Doudna, J (2013). RNA-programmed genome editing in human cells. Elife, 2. · DOI · Paper page
  9. Mali, 2013, RNA-guided human genome engineering via Cas9, Science, 339, 823, 10.1126/science.1232033 · DOI · Paper page
  10. Jinek, 2012, A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity, Science, 337, 816, 10.1126/science.1225829 · DOI · Paper page
  11. Marraffini, 2010, Self versus non-self discrimination during CRISPR RNA-directed immunity, Nature, 463, 568, 10.1038/nature08703 · DOI
  12. Hansen, 1999, The DNMT3B DNA methyltransferase gene is mutated in the ICF immunodeficiency syndrome, Proc. Natl. Acad. Sci USA, 96, 14412, 10.1073/pnas.96.25.14412 · DOI
  13. Okano, 1999, DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development, Cell, 99, 247, 10.1016/S0092-8674(00)81656-6 · DOI · Paper page
  14. Xu, 1999, Chromosome instability and immunodeficiency syndrome caused by mutations in a DNA methyltransferase gene, Nature, 402, 187, 10.1038/46052 · DOI
  15. Jeanpierre, 1993, An embryonic-like methylation pattern of classical satellite DNA is observed in ICF syndrome, Hum. Mol. Genet, 2, 731, 10.1093/hmg/2.6.731 · DOI
  16. Narayan, 2000, DNA hypomethylation and unusual chromosome instability in cell lines from ICF syndrome patients, Cytogenet. Cell Genet, 89, 121, 10.1159/000015590 · DOI
  17. Ding, 2013, Enhanced efficiency of human pluripotent stem cell genome editing through replacing TALENs with CRISPRs, Cell Stem Cell, 12, 393, 10.1016/j.stem.2013.03.006 · DOI · Paper page
  18. Hou, Z., Zhang, Y., Propson, N.E., Howden, S.E., Chu, L.F., Sontheimer, E.J., and Thomson, J.A. (2013). Efficient genome engineering in human pluripotent stem cells using Cas9 from neisseria meningitidis. Proc. Natl. Acad. Sci. USA. · DOI · Paper page
  19. Yang, L., Guell, M., Byrne, S., Yang, J.L., de Los Angeles, A., Mali, P., Aach, J., Kim-Kiselak, C., Briggs, A.W., and Rios, X. (2013). Optimization of scarless human stem cell genome editing. Nucleic Acids Res. · DOI
  20. Yang, 2013, One-step generation of mice carrying reporter and conditional alleles by CRISPR/Cas-mediated genome engineering, Cell, 154, 1370, 10.1016/j.cell.2013.08.022 · DOI · Paper page
  21. Gopalakrishnan, 2009, A novel DNMT3B splice variant expressed in tumor and pluripotent cells modulates genomic DNA methylation patterns and displays altered DNA binding, Mol. Cancer Res, 7, 1622, 10.1158/1541-7786.MCR-09-0018 · DOI

Cited by

Sorted by citations

See all 90

Metadata

Authors
Horii, T., Tamura, D., Morita, S., Kimura, M., & Hatada, I.
Affiliations
Laboratory of Genome Science, Biosignal Genome Resource Center, Institute for Molecular and Cellular Regulation, Gunma University, Gunma 371-8512, Japan
Venue
International Journal of Molecular Sciences
Publisher
MDPI AG
Published
2013-09-30
Volume
14
Issue
10
Pages
19774-19781
ISSN
1422-0067
Cited by
90
References
4
Language
en

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review