The Emerging Role of Non-Coding RNAs (ncRNAs) in Plant Growth, Development, and Stress Response Signaling

Origins and Mechanisms of miRNAs and siRNAs

Carthew, R. W., & Sontheimer, E. J. (2009) · Cell · doi:10.1016/j.cell.2009.01.035 · Cited by 5,161

circRNA biogenesis competes with pre-mRNA splicing

Ashwal-Fluss, R., Meyer, M., Pamudurti, N. R., Ivanov, A., Bartok, O., Hanan, M., Evantal, N., Memczak, S., Rajewsky, N., & Kadener, S. (2014) · Molecular Cell · doi:10.1016/j.molcel.2014.08.019 · Cited by 3,083

Long non-coding RNAs: definitions, functions, challenges and recommendations

Mattick, J. S., Amaral, P., Carninci, P., Carpenter, S. B., Chang, H. Y., Chen, L., Chen, R., Dean, C., Dinger, M. E., Fitzgerald, K. A., et al. (2023) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-022-00566-8 · Cited by 2,509

Origin, Biogenesis, and Activity of Plant MicroRNAs

Voinnet, O. (2009) · Cell · doi:10.1016/j.cell.2009.01.046 · Cited by 2,251

Control of leaf morphogenesis by microRNAs

Palatnik, J. F., Allen, E. M., Wu, X., Schommer, C., Schwab, R., Carrington, J. C., & Weigel, D. (2003) · Nature · doi:10.1038/nature01958 · Cited by 1,857

Past, present, and future of circRNAs

Patop, I. L., Wüst, S., & Kadener, S. (2019) · The EMBO Journal · doi:10.15252/embj.2018100836 · Cited by 1,237

Vernalization-Mediated Epigenetic Silencing by a Long Intronic Noncoding RNA

Heo, J. B., & Sung, S. (2010) · Science · doi:10.1126/science.1197349 · Cited by 1,230

Radial Patterning of Arabidopsis Shoots by Class III HD-ZIP and KANADI Genes

Emery, J. F., Floyd, S. K., Alvarez, J., Eshed, Y., Hawker, N. P., Izhaki, A., Baum, S. F., & Bowman, J. L. (2003) · Current Biology · doi:10.1016/j.cub.2003.09.035 · Cited by 1,143

Endogenous siRNAs Derived from a Pair of Natural cis-Antisense Transcripts Regulate Salt Tolerance in Arabidopsis

Borsani, O., Zhu, J., Verslues, P. E., Sunkar, R., & Zhu, J. (2005) · Cell · doi:10.1016/j.cell.2005.11.035 · Cited by 1,125

Getting to the Root of miRNA-Mediated Gene Silencing

Eulálio, A., Huntzinger, E., & Izaurralde, E. (2008) · Cell · doi:10.1016/j.cell.2007.12.024 · Cited by 1,071

The Arabidopsis NFYA5 Transcription Factor Is Regulated Transcriptionally and Posttranscriptionally to Promote Drought Resistance

Li, W., Oono, Y., Zhu, J., He, X., Wu, J., Iida, K., Lu, X., Cui, X., Jin, H., & Zhu, J. (2008) · The Plant Cell · doi:10.1105/tpc.108.059444 · Cited by 917

Cell Signalling by MicroRNA165/6 Directs Gene Dose-Dependent Root Cell Fate

Carlsbecker, A., Lee, J.-Y., Roberts, C. J., Dettmer, J., Lehesranta, S., Zhou, J., Lindgren, O., Moreno-Risueno, M. A., Vatén, A., Thitamadee, S., et al. (2010) · Nature · doi:10.1038/nature08977 · Cited by 861

Functions of microRNAs and related small RNAs in plants

Mallory, A. C., & Vaucheret, H. (2006) · Nature Genetics · doi:10.1038/ng1791 · Cited by 828

Circular RNA Expression: Its Potential Regulation and Function

Salzman, J. (2016) · Trends in Genetics · doi:10.1016/j.tig.2016.03.002 · Cited by 805

Non-Coding RNAs and their Integrated Networks

Zhang, P., Wu, W., Chen, Q., & Chen, M. (2019) · Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics · doi:10.1515/jib-2019-0027 · Cited by 722

Arabidopsis miR156 Regulates Tolerance to Recurring Environmental Stress through SPL Transcription Factors

Stief, A., Altmann, S., Hoffmann, K., Pant, B. D., Scheible, W., & Bäurle, I. (2014) · The Plant Cell · doi:10.1105/tpc.114.123851 · Cited by 640

Circular RNA (circRNA) in Alzheimer’s disease (AD)

Lukiw, W. J. (2013) · Frontiers in Genetics · doi:10.3389/fgene.2013.00307 · Cited by 636 · cited 1×

Posttranscriptional Gene Regulation by Long Noncoding RNA

Yoon, J., Abdelmohsen, K., & Gorospe, M. (2012) · Journal of Molecular Biology · doi:10.1016/j.jmb.2012.11.024 · Cited by 632

The Balance between the MIR164A and CUC2 Genes Controls Leaf Margin Serration in Arabidopsis

Nikovics, K., Blein, T., Peaucelle, A., Ishida, T., Morin, H., Aida, M., & Laufs, P. (2006) · The Plant Cell · doi:10.1105/tpc.106.045617 · Cited by 624

miR390, Arabidopsis TAS3 tasiRNAs, and Their AUXIN RESPONSE FACTOR Targets Define an Autoregulatory Network Quantitatively Regulating Lateral Root Growth

Marín, E., Jouannet, V., Herz, A., Lokerse, A. S., Weijers, D., Vaucheret, H., Nussaume, L., Crespi, M. D., & Maizel, A. (2010) · The Plant Cell · doi:10.1105/tpc.109.072553 · Cited by 597

Isolation and characterization of novel nodulin cDNAs representing genes expressed at early stages of soybean nodule development

Kouchi, H., & Hata, S. (1993) · Molecular and General Genetics MGG · doi:10.1007/bf00279537 · Cited by 557

Genome-wide screening and functional analysis identify a large number of long noncoding RNAs involved in the sexual reproduction of rice

Zhang, Y., Liao, J., Li, Z.-Y., Yu, Y., Zhang, J., Li, Q., Qu, L., Shu, W., & Chen, Y. (2014) · Genome biology · doi:10.1186/s13059-014-0512-1 · Cited by 553

Identification of drought-induced microRNAs in rice

Zhao, B., Liang, R., Ge, L., Li, W., Xiao, H., Lin, H., Ruan, K., & Jin, Y. (2007) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2007.01.022 · Cited by 525

Primary transcripts of microRNAs encode regulatory peptides

Lauressergues, D., Couzigou, J., Clemente, H. S., Martinez, Y., Dunand, C., Bécard, G., & Combier, J. (2015) · Nature · doi:10.1038/nature14346 · Cited by 477

Growth-Regulating Factors (GRFs): A Small Transcription Factor Family with Important Functions in Plant Biology

Omidbakhshfard, M. A., Proost, S., Fujikura, U., & Mueller‐Roeber, B. (2015) · Molecular Plant · doi:10.1016/j.molp.2015.01.013 · Cited by 459

Is junk DNA bunk? A critique of ENCODE

Doolittle, W. F. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1221376110 · Cited by 452

Submergence and Waterlogging Stress in Plants: A Review Highlighting Research Opportunities and Understudied Aspects

Fukao, T., Barrera-Figueroa, B. E., Juntawong, P., & Peña-Castro, J. M. (2019) · Frontiers in Plant Science · doi:10.3389/fpls.2019.00340 · Cited by 427

Pattern formation via small RNA mobilityPreprint

Chitwood, D. H., Nogueira, F. T. S., Howell, M. D., Montgomery, T. A., Carrington, J. C., & Timmermans, M. C. P. (2009) · Genes & Development · doi:10.1101/gad.1770009 · Cited by 399

Identification and characterization of wheat long non-protein coding RNAs responsive to powdery mildew infection and heat stress by using microarray analysis and SBS sequencing

Xin, M., Wang, Y., Yao, Y., Song, N., Hu, Z., Qin, D., Xie, C., Peng, H., Ni, Z., & Sun, Q. (2011) · BMC Plant Biology · doi:10.1186/1471-2229-11-61 · Cited by 398

A Nucleus-Localized Long Non-Coding RNA Enhances Drought and Salt Stress Tolerance

Qin, T., Zhao, H., Cui, P., Albesher, N., & Xiong, L. (2017) · PLANT PHYSIOLOGY · doi:10.1104/pp.17.00574 · Cited by 393

Long Noncoding RNA Modulates Alternative Splicing Regulators in Arabidopsis

Bardou, F., Ariel, F., Simpson, C. G., Romero-Barrios, N., Laporte, P., Balzergue, S., Brown, J. W. S., & Crespi, M. D. (2014) · Developmental Cell · doi:10.1016/j.devcel.2014.06.017 · Cited by 391

Ectopic expression of miR396 suppresses GRF target gene expression and alters leaf growth in Arabidopsis

Liu, D., Song, Y., Chen, Z., & Yu, D. (2009) · Physiologia Plantarum · doi:10.1111/j.1399-3054.2009.01229.x · Cited by 381

Global identification of Arabidopsis lncRNAs reveals the regulation of MAF4 by a natural antisense RNA

Zhao, X., Li, J., Lian, B., Gu, H., Li, Y., & Qi, Y. (2018) · Nature Communications · doi:10.1038/s41467-018-07500-7 · Cited by 372

Redundancy and specialization among plant microRNAs: role of the MIR164 family in developmental robustness

Sieber, P., Wellmer, F., Gheyselinck, J., Riechmann, J. L., & Meyerowitz, E. M. (2007) · Development · doi:10.1242/dev.02817 · Cited by 355

A Protracted and Dynamic Maturation Schedule Underlies Arabidopsis Leaf Development

Efroni, I., Blum, E., Goldshmidt, A., & Eshed, Y. (2008) · The Plant Cell · doi:10.1105/tpc.107.057521 · Cited by 343

A novel class of bacteria-induced small RNAs in ArabidopsisPreprint

Katiyar‐Agarwal, S., Gao, S., Vivian‐Smith, A., & Jin, H. (2007) · Genes & Development · doi:10.1101/gad.1595107 · Cited by 342

GORK, a delayed outward rectifier expressed in guard cells of Arabidopsis thaliana, is a K+‐selective, K+‐sensing ion channel

Ache, P., Becker, D., Ivashikina, N., Dietrich, P., Roelfsema, M. R. G., & Hedrich, R. (2000) · FEBS Letters · doi:10.1016/s0014-5793(00)02248-1 · Cited by 338

Post‐transcriptional control of GRF transcription factors by micro RNA miR396 and GIF co‐activator affects leaf size and longevity

Debernardi, J. M., Mecchia, M. A., Vercruyssen, L., Smaczniak, C., Kaufmann, K., Inzé, D., Rodríguez, R. E., & Palatnik, J. F. (2014) · The Plant Journal · doi:10.1111/tpj.12567 · Cited by 337

Characterization of stress‐responsive lnc RNA s in A rabidopsis thaliana by integrating expression, epigenetic and structural features

Di, C., Yuan, J., Wu, Y., Li, J., Lin, H., Hu, L., Zhang, T., Qi, Y., Gerstein, M., Guo, Y., et al. (2014) · The Plant Journal · doi:10.1111/tpj.12679 · Cited by 334

GmNFYA3, a target gene of miR169, is a positive regulator of plant tolerance to drought stress

Ni, Z., Hu, Z., Jiang, Q., & Zhang, H. (2013) · Plant Molecular Biology · doi:10.1007/s11103-013-0040-5 · Cited by 333

Vernalization-Triggered Intragenic Chromatin Loop Formation by Long Noncoding RNAs

Kim, D., & Sung, S. (2017) · Developmental Cell · doi:10.1016/j.devcel.2016.12.021 · Cited by 332

Rhizobial tRNA-derived small RNAs are signal molecules regulating plant nodulation

Ren, B., Wang, X., Duan, J., & Ma, J. (2019) · Science · doi:10.1126/science.aav8907 · Cited by 327

mi R 408 is involved in abiotic stress responses in A rabidopsis

Ma, C., Burd, S., & Lers, A. (2015) · The Plant Journal · doi:10.1111/tpj.12999 · Cited by 321

MicroRNAs and developmental timing

Ambros, V. (2011) · Current Opinion in Genetics & Development · doi:10.1016/j.gde.2011.04.003 · Cited by 314

R-Loop Mediated trans Action of the APOLO Long Noncoding RNA

Ariel, F., Lucero, L. E., Christ, A., Mammarella, M. F., Jégu, T., Veluchamy, A., Mariappan, K. G., Latrasse, D., Blein, T., Liu, C., et al. (2020) · Molecular Cell · doi:10.1016/j.molcel.2019.12.015 · Cited by 291

Repression of Cell Proliferation by miR319-Regulated TCP4

Schommer, C., Debernardi, J. M., Bresso, E. G., Rodríguez, R. E., & Palatnik, J. F. (2014) · Molecular Plant · doi:10.1093/mp/ssu084 · Cited by 290

Identification of soybean microRNAs and their targets

Zhang, B., Pan, X., & Stellwag, E. J. (2008) · Planta · doi:10.1007/s00425-008-0818-x · Cited by 287

Wheat quality: A review on chemical composition, nutritional attributes, grain anatomy, types, classification, and function of seed storage proteins in bread making quality

Khalid, A., Hameed, A., & Tahir, M. F. (2023) · Frontiers in Nutrition · doi:10.3389/fnut.2023.1053196 · Cited by 281

tRNA-derived small RNAs target transposable element transcripts

Martinez, G., Choudury, S. G., & Slotkin, R. K. (2017) · Nucleic Acids Research · doi:10.1093/nar/gkx103 · Cited by 274

MicroRNA156 improves drought stress tolerance in alfalfa ( Medicago sativa ) by silencing SPL13

Arshad, M. A., Feyissa, B. A., Amyot, L., Aung, B., & Hannoufa, A. (2017) · Plant Science · doi:10.1016/j.plantsci.2017.01.018 · Cited by 268

Non-coding RNA: a new frontier in regulatory biology

Fu, X. (2014) · National Science Review · doi:10.1093/nsr/nwu008 · Cited by 265

Overexpressing lncRNA LAIR increases grain yield and regulates neighbouring gene cluster expression in rice

Wang, Y., Luo, X., Sun, F., Hu, J., Zha, X., Su, W., & Yang, J. (2018) · Nature Communications · doi:10.1038/s41467-018-05829-7 · Cited by 262

Genome-Wide Analysis of Alternative Splicing during Development and Drought Stress in Maize

Thatcher, S., Danilevskaya, O. N., Meng, X., Beatty, M. K., Zastrow‐Hayes, G., Harris, C., Allen, B. V., Habben, J. E., & Li, B. (2015) · PLANT PHYSIOLOGY · doi:10.1104/pp.15.01267 · Cited by 258

Transcriptional read-through of the long non-coding RNA SVALKA governs plant cold acclimation

Kindgren, P., Ard, R., Ivanov, M., & Marquardt, S. (2018) · Nature Communications · doi:10.1038/s41467-018-07010-6 · Cited by 257

Roles of miR319 and TCP Transcription Factors in Leaf Development

Koyama, T., Sato, F., & Ohme‐Takagi, M. (2017) · PLANT PHYSIOLOGY · doi:10.1104/pp.17.00732 · Cited by 250

Identification and characterization of long non-coding RNAs involved in osmotic and salt stress in Medicago truncatula using genome-wide high-throughput sequencing

Wang, T., Liu, M., Zhao, M., Chen, R., & Zhang, W. (2015) · BMC Plant Biology · doi:10.1186/s12870-015-0530-5 · Cited by 240

microRNAs and Their Roles in Plant Development

Dong, Q., Hu, B., & Zhang, C. (2022) · Frontiers in Plant Science · doi:10.3389/fpls.2022.824240 · Cited by 238

PhasiRNAs in Plants: Their Biogenesis, Genic Sources, and Roles in Stress Responses, Development, and Reproduction

Liu, Y., Teng, C., Xia, R., & Meyers, B. C. (2020) · The Plant Cell · doi:10.1105/tpc.20.00335 · Cited by 233

Overexpression of miR165 Affects Apical Meristem Formation, Organ Polarity Establishment and Vascular Development in Arabidopsis

Zhou, G., Kubo, M., Zhong, R., Demura, T., & Ye, Z. (2007) · Plant and Cell Physiology · doi:10.1093/pcp/pcm008 · Cited by 232

MicroRNA319 Positively Regulates Cold Tolerance by Targeting OsPCF6 and OsTCP21 in Rice (Oryza sativa L.)

Wang, S., Sun, X., Hoshino, Y., Yu, Y., Jia, B., Sun, Z.-W., Sun, M.-Z., Duan, X., & Zhu, Y. (2014) · PLoS ONE · doi:10.1371/journal.pone.0091357 · Cited by 231

Signals and prepatterns: new insights into organ polarity in plantsPreprint

Husbands, A. Y., Chitwood, D. H., Plavskin, Y., & Timmermans, M. C. P. (2009) · Genes & Development · doi:10.1101/gad.1819909 · Cited by 225

Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis

Moldovan, D., Spriggs, A., Yang, J., Pogson, B. J., Dennis, E. S., & Wilson, I. W. (2009) · Journal of Experimental Botany · doi:10.1093/jxb/erp296 · Cited by 222

Plant Responses and Tolerance to Salt Stress: Physiological and Molecular Interventions

Hasanuzzaman, M., & Fujita, M. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms23094810 · Cited by 222

Experimental approaches to identify non-coding RNAs

Hüttenhofer, A. (2006) · Nucleic Acids Research · doi:10.1093/nar/gkj469 · Cited by 221

TamiR159 Directed Wheat TaGAMYB Cleavage and Its Involvement in Anther Development and Heat Response

Wang, Y., Sun, F., Cao, H., Peng, H., Ni, Z., Sun, Q., & Yao, Y. (2012) · PLoS ONE · doi:10.1371/journal.pone.0048445 · Cited by 218

Distinctive expression patterns and roles of the miRNA393/TIR1 homolog module in regulating flag leaf inclination and primary and crown root growth in rice (Oryza sativa)

Bian, H., Xie, Y., Guo, F., Han, N., Ma, S., Zeng, Z., Wang, J., Yang, Y., & Zhu, M. (2012) · New Phytologist · doi:10.1111/j.1469-8137.2012.04248.x · Cited by 215

Regulatory Functions of SnRK1 in Stress-Responsive Gene Expression and in Plant Growth and Development

Cho, Y.-H., Hong, J.-W., Kim, E., & Yoo, S.-D. (2012) · PLANT PHYSIOLOGY · doi:10.1104/pp.111.189829 · Cited by 214

Gene regulation by non-coding RNAs

Patil, V. S., Zhou, R., & Rana, T. M. (2013) · Critical Reviews in Biochemistry and Molecular Biology · doi:10.3109/10409238.2013.844092 · Cited by 210

miR394 and LCR are involved in Arabidopsis salt and drought stress responses in an abscisic acid-dependent manner

Song, J., Gao, S., Sun, D., Li, H., Shu, X., & Yang, Z. M. (2013) · BMC Plant Biology · doi:10.1186/1471-2229-13-210 · Cited by 204

Primary transcript of miR858 encodes regulatory peptide and controls flavonoid biosynthesis and development in Arabidopsis

Sharma, A., Badola, P. K., Bhatia, C., Sharma, D., & Trivedi, P. K. (2020) · Nature Plants · doi:10.1038/s41477-020-00769-x · Cited by 202

The grain yield modulator miR156 regulates seed dormancy through the gibberellin pathway in rice

Miao, C., Wang, Z., Zhang, L., Yao, J., Hua, K., Liu, X., Shi, H., & Zhu, J. (2019) · Nature Communications · doi:10.1038/s41467-019-11830-5 · Cited by 201

Comprehensive landscape and future perspectives of circular RNAs in colorectal cancer

Long, F., Lin, Z., Li, L., Ma, M., Lu, Z., Jing, L., Li, X., & Lin, C. (2021) · Molecular Cancer · doi:10.1186/s12943-021-01318-6 · Cited by 198

HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a–Directed Pathways in Arabidopsis

Li, S., Liu, J., Liu, Z., Li, X., Wu, F., & He, Y. (2014) · The Plant Cell · doi:10.1105/tpc.114.124883 · Cited by 194

Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development

Bresso, E. G., Chorostecki, U., Rodríguez, R. E., Palatnik, J. F., & Schommer, C. (2017) · PLANT PHYSIOLOGY · doi:10.1104/pp.17.00823 · Cited by 194

Long Noncoding RNAs in Plants

Wierzbicki, A. T., Blevins, T., & Świeżewski, S. (2021) · Annual Review of Plant Biology · doi:10.1146/annurev-arplant-093020-035446 · Cited by 191

Overexpression of a novel small peptide ROTUNDIFOLIA4 decreases cell proliferation and alters leaf shape in Arabidopsis thaliana

Narita, N. N., Moore, S. G., Horiguchi, G., Kubo, M., Demura, T., Fukuda, H., Goodrich, J., & Tsukaya, H. (2004) · The Plant Journal · doi:10.1111/j.1365-313x.2004.02078.x · Cited by 187

The Role of lncRNAs in Gene Expression Regulation through mRNA Stabilization

Sebastian‐delaCruz, M., González‐Moro, I., Olazagoitia‐Garmendia, A., Castellanos–Rubio, A., & Santín, I. (2021) · Non-Coding RNA · doi:10.3390/ncrna7010003 · Cited by 187

Regulation of miR319 during cold stress in sugarcane

Thiebaut, F., Rojas, C. A., Almeida, K. L., Grativol, C., Domiciano, G. C., Lamb, C. R. C., Engler, J. D. A., Hemerly, A. S., & Ferreira, P. C. G. (2011) · Plant Cell & Environment · doi:10.1111/j.1365-3040.2011.02430.x · Cited by 177

MiR393 Regulation of Auxin Signaling and Redox-Related Components during Acclimation to Salinity in Arabidopsis

Iglesias, M. J., Terrile, M. C., Windels, D., Lombardo, M. C., Bartoli, C. G., Vazquez, F., Estelle, M. A., & Casalongué, C. A. (2014) · PLoS ONE · doi:10.1371/journal.pone.0107678 · Cited by 175

Long Noncoding RNAs in Plants

Wang, H. V., & Chekanova, J. A. (2017) · Advances in experimental medicine and biology · doi:10.1007/978-981-10-5203-3_5 · Cited by 173

Heat shock factor HSFB2a involved in gametophyte development of Arabidopsis thaliana and its expression is controlled by a heat-inducible long non-coding antisense RNA

Wunderlich, M., Groß‐Hardt, R., & Schöffl, F. (2014) · Plant Molecular Biology · doi:10.1007/s11103-014-0202-0 · Cited by 168

Deciphering the roles of circRNAs on chilling injury in tomato

Zuo, J., Wang, Q., Zhu, B., Luo, Y., & Gao, L. (2016) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2016.07.032 · Cited by 166

Regulation of the ABA‐sensitive Arabidopsis potassium channel gene GORK in response to water stress

Becker, D., Hoth, S., Ache, P., Wenkel, S., Roelfsema, M. R. G., Meyerhoff, O., Hartung, W., & Hedrich, R. (2003) · FEBS Letters · doi:10.1016/s0014-5793(03)01118-9 · Cited by 164

COOLAIR Antisense RNAs Form Evolutionarily Conserved Elaborate Secondary Structures

Hawkes, E., Hennelly, S. P., Novikova, I. V., Irwin, J. A., Dean, C., & Sanbonmatsu, K. Y. (2016) · Cell Reports · doi:10.1016/j.celrep.2016.08.045 · Cited by 163

Control of seed dormancy in Arabidopsis by a cis -acting noncoding antisense transcript

Fedak, H., Palusińska, M., Krzyczmonik, K., Brzezniak, L. K., Yatusevich, R., Pietras, Z., Kaczanowski, S., & Świeżewski, S. (2016) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1608827113 · Cited by 159

Updates on the Role of ABSCISIC ACID INSENSITIVE 5 (ABI5) and ABSCISIC ACID-RESPONSIVE ELEMENT BINDING FACTORs (ABFs) in ABA Signaling in Different Developmental Stages in Plants

Collin, A., Daszkowska‐Golec, A., & Szarejko, I. (2021) · Cells · doi:10.3390/cells10081996 · Cited by 158

Active suppression of a leaf meristem orchestrates determinate leaf growth

Alvarez, J. P., Furumizu, C., Efroni, I., Eshed, Y., & Bowman, J. L. (2016) · eLife · doi:10.7554/elife.15023 · Cited by 155

MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis

Lin, J., Kuo, C.-C., Yang, I.-C., Tsai, W., Shen, Y.-H., Lin, C.-C., Liang, Y.-C., Li, Y., Kuo, Y., King, Y., et al. (2018) · Frontiers in Plant Science · doi:10.3389/fpls.2018.00068 · Cited by 155

Repeat associated small RNAs vary among parents and following hybridization in maize

Barber, W. T., Zhang, W., Win, H., Varala, K., Dorweiler, J. E., Hudson, M. E., & Moose, S. P. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1202073109 · Cited by 151

A large‐scale circular RNA profiling reveals universal molecular mechanisms responsive to drought stress in maize and Arabidopsis

Zhang, P., Fan, Y., Sun, X., Chen, L., Terzaghi, W., Bucher, E., Li, L., & Dai, M. (2019) · The Plant Journal · doi:10.1111/tpj.14267 · Cited by 150

The lncRNA APOLO interacts with the transcription factor WRKY42 to trigger root hair cell expansion in response to cold

Moison, M., Pacheco, J. M., Lucero, L. E., Fonouni‐Farde, C., Rodríguez-Melo, J., Mansilla, N., Christ, A., Bazin, J., Benhamed, M., Ibáñez, F., et al. (2021) · Molecular Plant · doi:10.1016/j.molp.2021.03.008 · Cited by 150

Characterizing the Role of the miR156-SPL Network in Plant Development and Stress Response

Jeyakumar, J. M. J., Ali, A., Wang, W., & Thiruvengadam, M. (2020) · Plants · doi:10.3390/plants9091206 · Cited by 149

The POLARIS Peptide of Arabidopsis Regulates Auxin Transport and Root Growth via Effects on Ethylene Signaling

Chilley, P. M., Casson, S. A., Tarkowski, P., Hawkins, N. D., Wang, K. L.-C., Hussey, P. J., Beale, M., Ecker, J. R., Sandberg, G., & Lindsey, K. (2006) · The Plant Cell · doi:10.1105/tpc.106.040790 · Cited by 148

Genome-wide analysis of plant nat-siRNAs reveals insights into their distribution, biogenesis and function

Zhang, X., Xia, J., Lii, Y., Barrera-Figueroa, B. E., Zhou, X., Gao, S., Lu, L., Niu, D., Chen, Z., Leung, C., et al. (2012) · Genome biology · doi:10.1186/gb-2012-13-3-r20 · Cited by 147

Maternal siRNAs as regulators of parental genome imbalance and gene expression in endosperm of Arabidopsis seeds

Lu, J., Zhang, C., Baulcombe, D. C., & Chen, Z. J. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1203094109 · Cited by 145

Transgenic creeping bentgrass overexpressing Osa‐miR393a exhibits altered plant development and improved multiple stress tolerance

Zhao, J., Yuan, S., Zhou, M., Yuan, N. Y., Li, Z., Hu, Q., Bethea, F. G., Liu, H., Li, S., & Luo, H. (2018) · Plant Biotechnology Journal · doi:10.1111/pbi.12960 · Cited by 143

Full-length sequence assembly reveals circular RNAs with diverse non-GT/AG splicing signals in rice

Ye, C., Zhang, X., Chu, Q., Liu, C., Yu, Y., Jiang, W., Zhu, Q., Fan, L., & Guo, L. (2016) · RNA Biology · doi:10.1080/15476286.2016.1245268 · Cited by 141

A novel antisense long noncoding RNA , TWISTED LEAF , maintains leaf blade flattening by regulating its associated sense R2R3‐ MYB gene in rice

Liu, X., Li, D., Zhang, D., Yin, D., Zhao, Y. C., Ji, C., Zhao, X. F., Li, X., He, Q., Chen, R., et al. (2018) · New Phytologist · doi:10.1111/nph.15023 · Cited by 140

Emerging Functions for snoRNAs and snoRNA-Derived Fragments

Wajahat, M., Bracken, C. P., & Orang, A. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms221910193 · Cited by 139

DVL, a novel class of small polypeptides: overexpression alters Arabidopsis development

Wen, J., Lease, K. A., & Walker, J. C. (2004) · The Plant Journal · doi:10.1111/j.1365-313x.2003.01994.x · Cited by 135

A miRNA-Encoded Small Peptide, vvi-miPEP171d1, Regulates Adventitious Root Formation

Chen, Q., Deng, B.-H., Gao, J., Zhao, Z.-Y., Chen, Z., Song, S., Wang, L., Zhao, L., Xu, W., Zhang, C., et al. (2020) · PLANT PHYSIOLOGY · doi:10.1104/pp.20.00197 · Cited by 135

The interaction between miR160 and miR165/166 in the control of leaf development and drought tolerance in Arabidopsis

Yang, T., Wang, Y., Teotia, S., Wang, Z., Shi, C., Sun, H., Gu, Y., Zhang, Z., & Tang, G. (2019) · Scientific Reports · doi:10.1038/s41598-019-39397-7 · Cited by 134

Genome-wide analysis of long non-coding RNAs unveils the regulatory roles in the heat tolerance of Chinese cabbage (Brassica rapa ssp.chinensis)

Wang, A., Hu, J., Gao, C., Chen, G., Wang, B., Lin, C., Song, L., Ding, Y., & Zhou, G. (2019) · Scientific Reports · doi:10.1038/s41598-019-41428-2 · Cited by 133

Regulation of MIR165/166 by class II and class III homeodomain leucine zipper proteins establishes leaf polarity

Merelo, P., Ram, H., Caggiano, M. P., Ohno, C. K., Ott, F., Straub, D., Graeff, M., Cho, S. K., Yang, S. W., Wenkel, S., et al. (2016) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1516110113 · Cited by 132

Cell-to-cell and long-distance siRNA movement in plants: mechanisms and biological implications

Brosnan, C. A., & Voinnet, O. (2011) · Current Opinion in Plant Biology · doi:10.1016/j.pbi.2011.07.011 · Cited by 129

PLncPRO for prediction of long non-coding RNAs (lncRNAs) in plants and its application for discovery of abiotic stress-responsive lncRNAs in rice and chickpea

Singh, U., Khemka, N., Rajkumar, M. S., Garg, R., & Jain, M. (2017) · Nucleic Acids Research · doi:10.1093/nar/gkx866 · Cited by 128

Regulatory non-coding RNAs: a new frontier in regulation of plant biology

Bhogireddy, S., Mangrauthia, S. K., Kumar, R., Pandey, A. K., Singh, S., Jain, A., Budak, H., Varshney, R. K., & Kudapa, H. (2021) · Functional & Integrative Genomics · doi:10.1007/s10142-021-00787-8 · Cited by 128

MicroRNA402 Affects Seed Germination of Arabidopsis thaliana Under Stress Conditions via Targeting DEMETER-LIKE Protein3 mRNA

Kim, J. Y., Kwak, K. J., Jung, H., LEE, H. J., & Kang, H. (2010) · Plant and Cell Physiology · doi:10.1093/pcp/pcq072 · Cited by 127

Plant Non-Coding RNAs: Origin, Biogenesis, Mode of Action and Their Roles in Abiotic Stress

Waititu, J. K., Zhang, C., Liu, J., & Wang, H. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21218401 · Cited by 127

Transcriptome profiling of drought responsive noncoding RNAs and their target genes in rice

Chung, P. J., Jung, H., Jeong, D., Ha, S., Choi, Y. D., & Kim, J. (2016) · BMC Genomics · doi:10.1186/s12864-016-2997-3 · Cited by 124

Heat stress alters genome-wide profiles of circular RNAs in Arabidopsis

Pan, T. S., Sun, X., Liu, Y., Li, H., Deng, G., Lin, H., & Wang, S. (2017) · Plant Molecular Biology · doi:10.1007/s11103-017-0684-7 · Cited by 124

Long non-coding RNAs in plants: emerging modulators of gene activity in development and stress responses

Chen, L., Zhu, Q., & Kaufmann, K. (2020) · Planta · doi:10.1007/s00425-020-03480-5 · Cited by 119

New insight into circRNAs: characterization, strategies, and biomedical applications

Feng, X., Zhu, S.-X., Pu, K., Huang, H., Chen, Y., & Wang, W. (2023) · Experimental Hematology and Oncology · doi:10.1186/s40164-023-00451-w · Cited by 119

RAS1, a quantitative trait locus for salt tolerance and ABA sensitivity in Arabidopsis

Ren, Z., Zheng, Z., Chinnusamy, V., Zhu, J., Cui, X., Iida, K., & Zhu, J. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0910798107 · Cited by 117

The Arabidopsis lncRNA ASCO modulates the transcriptome through interaction with splicing factors

Rigo, R., Bazin, J., Romero-Barrios, N., Moison, M., Lucero, L. E., Christ, A., Benhamed, M., Blein, T., Huguet, S., Charon, C., et al. (2020) · EMBO Reports · doi:10.15252/embr.201948977 · Cited by 117

Haplotype variation in structure and expression of a gene cluster associated with a quantitative trait locus for improved yield in ricePreprint

He, G., Luo, X., Tian, F., Li, K., Zhu, Z., Su, W., Qian, X., Fu, Y., Wang, X., Sun, C., et al. (2006) · Genome Research · doi:10.1101/gr.4814006 · Cited by 114

Principles and innovative technologies for decrypting noncoding RNAs: from discovery and functional prediction to clinical application

Sun, Y., & Chen, Y.-Q. (2020) · Journal of Hematology & Oncology · doi:10.1186/s13045-020-00945-8 · Cited by 114

Identification and expression analysis of miRNAs and elucidation of their role in salt tolerance in rice varieties susceptible and tolerant to salinity

Parmar, S., Gharat, S. A., Tagirasa, R., Chandra, T., Behera, L., Dash, S. K., & Shaw, B. P. (2020) · PLoS ONE · doi:10.1371/journal.pone.0230958 · Cited by 109

Divergence in Patterns of Leaf Growth Polarity Is Associated with the Expression Divergence of miR396

Gupta, M. D., & Nath, U. (2015) · The Plant Cell · doi:10.1105/tpc.15.00196 · Cited by 107

MicroRNA156 amplifies transcription factor-associated cold stress tolerance in plant cells

Zhou, M., & Tang, W. (2018) · Molecular Genetics and Genomics · doi:10.1007/s00438-018-1516-4 · Cited by 106

Circular RNAs as microRNA sponges: evidence and controversies

Olesen, M. T. J., & Kristensen, L. S. (2021) · Essays in Biochemistry · doi:10.1042/ebc20200060 · Cited by 106

Characterization and Function of Circular RNAs in Plants

Zhang, P., Li, S., & Chen, M. (2020) · Frontiers in Molecular Biosciences · doi:10.3389/fmolb.2020.00091 · Cited by 104

Identification of miRNA-mediated drought responsive multi-tiered regulatory network in drought tolerant rice, Nagina 22

Balyan, S. C., Kumar, M., Mutum, R. D., Raghuvanshi, U., Agarwal, P., Mathur, S., & Raghuvanshi, S. (2017) · Scientific Reports · doi:10.1038/s41598-017-15450-1 · Cited by 101

Biogenesis and regulatory hierarchy of phased small interfering RNAs in plants

Deng, P., Muhammad, S., Cao, M., & Wu, L. (2018) · Plant Biotechnology Journal · doi:10.1111/pbi.12882 · Cited by 101

Identification of novel and conserved Populus tomentosa microRNA as components of a response to water stress

Ren, Y., Chen, L., Zhang, Y., Kang, X., Zhang, Z., & Wang, Y. (2012) · Functional & Integrative Genomics · doi:10.1007/s10142-012-0271-6 · Cited by 100

The parent-of-origin lncRNA MISSEN regulates rice endosperm development

Zhou, Y.-F., Zhang, Y., Sun, Y., Yu, Y., Lei, M.-Q., Yang, Y., Lian, J., Feng, Y., Zhang, Z., Yang, L., et al. (2021) · Nature Communications · doi:10.1038/s41467-021-26795-7 · Cited by 100

Endogenous TasiRNAs Mediate Non-Cell Autonomous Effects on Gene Regulation in Arabidopsis thaliana

Schwab, R., Maizel, A., Ruíz‐Ferrer, V., Garcia, D., Bayer, M. J., Crespi, M. D., Voinnet, O., & Martienssen, R. A. (2009) · PLoS ONE · doi:10.1371/journal.pone.0005980 · Cited by 99

Interplay between miRNAs and lncRNAs: Mode of action and biological roles in plant development and stress adaptation

Meng, X., Li, A., Yu, B., & Li, S. (2021) · Computational and Structural Biotechnology Journal · doi:10.1016/j.csbj.2021.04.062 · Cited by 99

An Insight into microRNA156 Role in Salinity Stress Responses of Alfalfa

Arshad, M. A., Gruber, M. Y., Wall, K. G., & Hannoufa, A. (2017) · Frontiers in Plant Science · doi:10.3389/fpls.2017.00356 · Cited by 98

Identification and functional prediction of cold-related long non-coding RNA (lncRNA) in grapevine

Wang, P., Dai, L., Ai, J., Wang, Y., & Ren, F. (2019) · Scientific Reports · doi:10.1038/s41598-019-43269-5 · Cited by 98

Arabidopsis RNA-binding Protein FCA Regulates MicroRNA172 Processing in Thermosensory Flowering

Jung, J.-H., Seo, P. J., Ahn, J. H., & Park, C. (2012) · Journal of Biological Chemistry · doi:10.1074/jbc.m111.337485 · Cited by 96

Both maternally and paternally imprinted genes regulate seed development in rice

Yuan, J., Chen, S., Wu, J., Wang, L., Wang, L., Ye, W., Lu, J., Hong, D., You, S., Cheng, Z., et al. (2017) · New Phytologist · doi:10.1111/nph.14510 · Cited by 93

Spatio-Temporal Transcriptional Dynamics of Maize Long Non-Coding RNAs Responsive to Drought Stress

Pang, J., Zhang, X., Ma, X., & Zhao, J. Y. (2019) · Genes · doi:10.3390/genes10020138 · Cited by 92

Phloem-associated auxin response maxima determine radial positioning of lateral roots in maize

Jansen, L., Roberts, I., Rycke, R. M. D., & Beeckman, T. (2012) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2011.0239 · Cited by 90

miR394 and its target gene LCR are involved in cold stress response in Arabidopsis

Song, J. B., Gao, S., Wang, Y., Li, B. W., Zhang, Y. L., & Yang, Z. M. (2015) · Plant Gene · doi:10.1016/j.plgene.2015.12.001 · Cited by 90

Non-coding small RNAs responsive to abiotic stress in wheat (Triticum aestivum L.)

Yao, Y., Ni, Z., Peng, H., Sun, F., Xin, M., Sunkar, R., Zhu, J., & Sun, Q. (2010) · Functional & Integrative Genomics · doi:10.1007/s10142-010-0163-6 · Cited by 88

miR156-targeted SPL10 controls Arabidopsis root meristem activity and root-derived de novo shoot regeneration via cytokinin responses

Barrera‐Rojas, C. H., Rocha, G. H. B., Polverari, L., Brito, D. A. P., Batista, D. S., Notini, M. M., da Cruz, A. C. F., Morea, E. G. O., Sabatini, S., Otoni, W. C., et al. (2019) · Journal of Experimental Botany · doi:10.1093/jxb/erz475 · Cited by 87

Roles of miR319-regulated TCPs in plant development and response to abiotic stress

Fang, Y., Zheng, Y., Lu, W., Li, J., Duan, Y., Zhang, S., & Wang, Y. (2020) · The Crop Journal · doi:10.1016/j.cj.2020.07.007 · Cited by 87

Long Non-Coding RNAs of Plants in Response to Abiotic Stresses and Their Regulating Roles in Promoting Environmental Adaption

Yang, H. Y., Cui, Y., Feng, Y., Hu, Y., Liu, L., & Duan, L. (2023) · Cells · doi:10.3390/cells12050729 · Cited by 87

scPlantDB: a comprehensive database for exploring cell types and markers of plant cell atlases

He, Z., Luo, Y., Zhou, X., Zhu, T., Lan, Y., & Chen, D. (2023) · Nucleic Acids Research · doi:10.1093/nar/gkad706 · Cited by 86

Genome‐wide identification and analysis of microRNA responding to long‐term waterlogging in crown roots of maize seedlings

Zhai, L., Liu, Z., Zou, X., Jiang, Y., Qiu, F., Zheng, Y., & Zhang, Z. (2012) · Physiologia Plantarum · doi:10.1111/j.1399-3054.2012.01653.x · Cited by 85

Present Scenario of Circular RNAs (circRNAs) in Plants

Zhao, W., Chu, S., & Jiao, Y. (2019) · Frontiers in Plant Science · doi:10.3389/fpls.2019.00379 · Cited by 85

Genome-wide analysis of the SPL family transcription factors and their responses to abiotic stresses in maize

Mao, H., Yu, L., Li, Z.-J., Yan, Y., Han, R., Liu, H., & Ma, M. (2016) · Plant Gene · doi:10.1016/j.plgene.2016.03.003 · Cited by 84

Non-Coding RNAs in Response to Drought Stress

Gelaw, T. A., & Mishra, N. S. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms222212519 · Cited by 84

Adenine Phosphoribosyl Transferase 1 is a Key Enzyme Catalyzing Cytokinin Conversion from Nucleobases to Nucleotides in Arabidopsis

Zhang, X., Chen, Y., Lin, X., Hong, X., Zhu, Y., Li, W., He, W., An, F., & Guo, H. (2013) · Molecular Plant · doi:10.1093/mp/sst071 · Cited by 82

Secondary siRNAs in Plants: Biosynthesis, Various Functions, and Applications in Virology

Mishra, N. S., Jailani, A. A. K., Mandal, B., & Mukherjee, S. K. (2021) · Frontiers in Plant Science · doi:10.3389/fpls.2021.610283 · Cited by 80

Identifying and Characterizing the Circular RNAs during the Lifespan of Arabidopsis Leaves

Liu, T., Zhang, L., Chen, G., & Shi, T. (2017) · Frontiers in Plant Science · doi:10.3389/fpls.2017.01278 · Cited by 78

Genome-Wide Analysis of leafbladeless1-Regulated and Phased Small RNAs Underscores the Importance of the TAS3 ta-siRNA Pathway to Maize Development

Dotto, M. C., Petsch, K. A., Aukerman, M. J., Beatty, M. K., Hammell, M., & Timmermans, M. C. P. (2014) · PLoS Genetics · doi:10.1371/journal.pgen.1004826 · Cited by 77

Genome-Wide Transcript and Small RNA Profiling Reveals Transcriptomic Responses to Heat Stress

He, J., Jiang, Z., Gao, L., You, C., Ma, X., Wang, X., Xu, X., Mo, B., Chen, X., & Liu, L. (2019) · PLANT PHYSIOLOGY · doi:10.1104/pp.19.00403 · Cited by 77

Development of EMS-induced mutation population for amylose and resistant starch variation in bread wheat (Triticum aestivum) and identification of candidate genes responsible for amylose variation

Mishra, A., Singh, A., Sharma, M., Kumar, P., & Roy, J. K. (2016) · BMC Plant Biology · doi:10.1186/s12870-016-0896-z · Cited by 76

Dehydration-Responsive Element Binding Protein 1C, 1E, and 1G Promote Stress Tolerance to Chilling, Heat, Drought, and Salt in Rice

Wang, H., Lu, S., Guan, X., Jiang, Y., Wang, B., Hua, J., & Zou, B. (2022) · Frontiers in Plant Science · doi:10.3389/fpls.2022.851731 · Cited by 76

Functions of long non-coding RNA in Arabidopsis thaliana

Jampala, P., Garhewal, A., & Lodha, M. (2021) · Plant Signaling & Behavior · doi:10.1080/15592324.2021.1925440 · Cited by 75

The Characters of Non-Coding RNAs and Their Biological Roles in Plant Development and Abiotic Stress Response

Ma, X., Zhao, F., & Zhou, B. O. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms23084124 · Cited by 74

Argonautes compete for miR165/166 to regulate shoot apical meristem development

Zhang, Z., & Zhang, X. (2012) · Current Opinion in Plant Biology · doi:10.1016/j.pbi.2012.05.007 · Cited by 73

Analysis of Soybean Long Non-Coding RNAs Reveals a Subset of Small Peptide-Coding Transcripts

Lin, X., Lin, W., Ku, Y., Wong, F., Li, M., Lam, H., Ngai, S. M., & Chan, T. (2019) · PLANT PHYSIOLOGY · doi:10.1104/pp.19.01324 · Cited by 73

Genetic control of panicle architecture in rice

Li, G., Zhang, H., Li, J., Zhang, Z., & Li, Z. (2021) · The Crop Journal · doi:10.1016/j.cj.2021.02.004 · Cited by 73

Long Non-Coding RNAs, the Dark Matter: An Emerging Regulatory Component in Plants

Waseem, M., Liu, Y., & Xia, R. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms22010086 · Cited by 71

The role of HD-ZIP III transcription factors andmiR165/166in vascular development and secondary cell wall formation

Du, Q., & Wang, H. (2015) · Plant Signaling & Behavior · doi:10.1080/15592324.2015.1078955 · Cited by 70

Plant Adaptation to Flooding Stress under Changing Climate Conditions: Ongoing Breakthroughs and Future Challenges

Aslam, A., Mahmood, A., Rehman, H. U., Li, C., Liang, X., Shao, J., Negm, S., Moustafa, M., Aamer, M., & Hassan, M. (2023) · Plants · doi:10.3390/plants12223824 · Cited by 70

Progress in understanding and improving oil content and quality in seeds

Sagun, J. V., Yadav, U. P., & Alonso, A. P. (2023) · Frontiers in Plant Science · doi:10.3389/fpls.2023.1116894 · Cited by 69

The miR165/166–PHABULOSA module promotes thermotolerance by transcriptionally and posttranslationally regulating HSFA1

Li, J., Cao, Y., Zhang, J., Zhu, C., Tang, G., & Yan, J. (2023) · The Plant Cell · doi:10.1093/plcell/koad121 · Cited by 69

The key players of the primary root growth and development also function in lateral roots in Arabidopsis

Tian, H., Jia, Y., Niu, T., Yu, Q., & Ding, Z. (2014) · Plant Cell Reports · doi:10.1007/s00299-014-1575-x · Cited by 68

Dissecting molecular mechanisms underlying salt tolerance in rice: a comparative transcriptional profiling of the contrasting genotypes

Mansuri, R. M., Shobbar, Z., Jelodar, N. B., Ghaffari, M. R., Nematzadeh, G., & Asari, S. (2019) · Rice · doi:10.1186/s12284-019-0273-2 · Cited by 65

A Comprehensive Transcriptomics Analysis Reveals Long Non-Coding RNA to Be Involved in the Key Metabolic Pathway in Response to Waterlogging Stress in Maize

Yu, F., Tan, Z., Tian, F., Tang, K., Liang, K., & Qiu, F. (2020) · Genes · doi:10.3390/genes11030267 · Cited by 65

Non-coding RNAs fine-tune the balance between plant growth and abiotic stress tolerance

Zhang, Y., Zhou, Y., Zhu, W., Liu, J., & Cheng, F. (2022) · Frontiers in Plant Science · doi:10.3389/fpls.2022.965745 · Cited by 64

Involvement of the miR156/SPL module in flooding response in Medicago sativa

Feyissa, B. A., Amyot, L., Nasrollahi, V., Papadopoulos, Y. A., Kohalmi, S. E., & Hannoufa, A. (2021) · Scientific Reports · doi:10.1038/s41598-021-82450-7 · Cited by 62

Mechanisms of Small RNA Generation from Cis-NATs in Response to Environmental and Developmental Cues

Zhang, X., Lii, Y., Wu, Z., Polishko, A., Zhang, H., Chinnusamy, V., Lonardi, S., Zhu, J., Liu, R., & Jin, H. (2013) · Molecular Plant · doi:10.1093/mp/sst051 · Cited by 59

The miR396-GRFs Module Mediates the Prevention of Photo-oxidative Damage by Brassinosteroids during Seedling De-Etiolation in Arabidopsis

Wang, L., Tian, Y., Shi, W., Yu, P., Hu, Y., Lv, J., Fu, C., Fan, M., & Bai, M. (2020) · The Plant Cell · doi:10.1105/tpc.20.00057 · Cited by 59

Genome Engineering for Crop Improvement

(2021) · Wiley eBooks · doi:10.1002/9781119672425 · Cited by 57

Nuclear Speckle RNA Binding Proteins Remodel Alternative Splicing and the Non-coding Arabidopsis Transcriptome to Regulate a Cross-Talk Between Auxin and Immune Responses

Bazin, J., Romero-Barrios, N., Rigo, R., Charon, C., Blein, T., Ariel, F., & Crespi, M. D. (2018) · Frontiers in Plant Science · doi:10.3389/fpls.2018.01209 · Cited by 56

Genome-wide identification of oil biosynthesis-related long non-coding RNAs in allopolyploid Brassica napus

Shen, E., Zhu, X., Hua, S., Chen, H., Ye, C., Zhou, L., Liu, Q., Zhu, Q., Fan, L., & Chen, X. (2018) · BMC Genomics · doi:10.1186/s12864-018-5117-8 · Cited by 54

The barley miR393 has multiple roles in regulation of seedling growth, stomatal density, and drought stress tolerance

Yuan, W., Suo, J., Shi, B., Zhou, C., Bai, B., Bian, H., Zhu, M., & Han, N. (2019) · Plant Physiology and Biochemistry · doi:10.1016/j.plaphy.2019.07.021 · Cited by 53

miR168 targets Argonaute1A mediated miRNAs regulation pathways in response to potassium deficiency stress in tomato

Liu, X., Tan, C., Cheng, X., Zhao, X., Li, T., & Jiang, J. (2020) · BMC Plant Biology · doi:10.1186/s12870-020-02660-5 · Cited by 49

Role of long non coding RNA in plants under abiotic and biotic stresses

Patra, G. K., Gupta, D., Rout, G. R., & Panda, S. K. (2022) · Plant Physiology and Biochemistry · doi:10.1016/j.plaphy.2022.10.030 · Cited by 49

Chilling and Heat Stress-Induced Physiological Changes and MicroRNA-Related Mechanism in Sweetpotato (Ipomoea batatas L.)

Yu, J., Su, D., Yang, D., Dong, T., Tang, Z., Li, H., Han, Y., Li, Z., & Zhang, B. (2020) · Frontiers in Plant Science · doi:10.3389/fpls.2020.00687 · Cited by 48

Structural insights into piRNA biogenesis

Zhang, J., Chen, S., & Liu, K. (2022) · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · doi:10.1016/j.bbagrm.2022.194799 · Cited by 47

Overexpression of lncRNA77580 Regulates Drought and Salinity Stress Responses in Soybean

Chen, X., Jiang, X., Niu, F., Sun, X., Hu, Z., Gao, F., Zhang, H., & Jiang, Q. (2023) · Plants · doi:10.3390/plants12010181 · Cited by 47

The Making of Leaves: How Small RNA Networks Modulate Leaf Development

Yang, T., Wang, Y., Teotia, S., Zhang, Z., & Tang, G. (2018) · Frontiers in Plant Science · doi:10.3389/fpls.2018.00824 · Cited by 45

Predicting miRNA-lncRNA interactions and recognizing their regulatory roles in stress response of plants

Bouba, I., Kang, Q., Luan, Y., & Meng, J. (2019) · Mathematical Biosciences · doi:10.1016/j.mbs.2019.04.006 · Cited by 45

Identification and characterization of CircRNAs involved in the regulation of wheat root length

Xu, Y., Ren, Y., Lin, T., & Cui, D. (2019) · Biological Research · doi:10.1186/s40659-019-0228-5 · Cited by 44

Shining in the dark: the big world of small peptides in plants

Feng, Y., Zhu, Q., Xue, J., Chen, P. C., & Yu, Y. (2023) · aBIOTECH · doi:10.1007/s42994-023-00100-0 · Cited by 44

Plant Small RNA World Growing Bigger: tRNA-Derived Fragments, Longstanding Players in Regulatory Processes

Alves, C. D. S., & Nogueira, F. T. S. (2021) · Frontiers in Molecular Biosciences · doi:10.3389/fmolb.2021.638911 · Cited by 43

Integration of mRNA and microRNA analysis reveals the molecular mechanisms underlying drought stress tolerance in maize (Zea mays L.)

Jiao, P., Ma, R., Wang, C., Chen, N., Liu, S., Qu, J., Guan, S., & Ma, Y. (2022) · Frontiers in Plant Science · doi:10.3389/fpls.2022.932667 · Cited by 41

An overview on miRNA-encoded peptides in plant biology research

Yadav, A., Sanyal, I., Rai, S. P., & Lata, C. (2021) · Genomics · doi:10.1016/j.ygeno.2021.05.013 · Cited by 40

A Review of Discovery Profiling of PIWI-Interacting RNAs and Their Diverse Functions in Metazoans

Huang, S., Yoshitake, K., & Asakawa, S. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms222011166 · Cited by 39

A novel long noncoding RNA CIL1 enhances cold stress tolerance in Arabidopsis

Liu, G., Liu, F., Wang, Y., & Liu, X. (2022) · Plant Science · doi:10.1016/j.plantsci.2022.111370 · Cited by 39

LNA mediated in situ hybridization of miR171 and miR397a in leaf and ambient root tissues revealed expressional homogeneity in response to shoot heat shock in Arabidopsis thaliana

Mahale, B. M., Fakrudin, B., Ghosh, S., & Krishnaraj, P. U. (2013) · Journal of Plant Biochemistry and Biotechnology · doi:10.1007/s13562-013-0191-0 · Cited by 38

Genome-wide profiling of long noncoding RNAs involved in wheat spike development

Cao, P., Fan, W., Li, P., & Hu, Y. (2021) · BMC Genomics · doi:10.1186/s12864-021-07851-4 · Cited by 38

The biogenesis, biological functions and modification of Circular RNAs

Liu, S., Guo, X., Shang, Q. J., & Gao, P. (2023) · Experimental and Molecular Pathology · doi:10.1016/j.yexmp.2023.104861 · Cited by 37

Identification and characterization of long non-coding RNAs regulating resistant starch biosynthesis in bread wheat (Triticum aestivum L.)

Madhawan, A., Sharma, A., Bhandawat, A., Rahim, M. S., Kumar, P., Mishra, A., Parveen, A., Sharma, H., Verma, S. K., & Roy, J. K. (2020) · Genomics · doi:10.1016/j.ygeno.2020.05.014 · Cited by 36

Genome-Wide Identification of Circular RNAs in Response to Low-Temperature Stress in Tomato Leaves

Yang, X., Liu, Y., Zhang, H., Wang, J., Zinta, G., Xie, S., Zhu, W., & Nie, W. (2020) · Frontiers in Genetics · doi:10.3389/fgene.2020.591806 · Cited by 36

Identification and functional prediction of long non-coding RNAs of rice (Oryza sativa L.) at reproductive stage under salinity stress

Jain, P., Hussian, S., Nishad, J., Dubey, H., Bisht, D. S., Sharma, T. R., & Mondal, T. K. (2021) · Molecular Biology Reports · doi:10.1007/s11033-021-06246-8 · Cited by 36

A novel long non-coding RNA, DIR, increases drought tolerance in cassava by modifying stress-related gene expression

Dong, S., Liang, X. I. A. O., Zhi-bo, L. I., Jie, S. H. E. N., Yan, H., Shu-xia, L. I., Liao, W., & Peng, M. (2022) · Journal of Integrative Agriculture · doi:10.1016/j.jia.2022.07.022 · Cited by 36

Plant long non-coding RNAs: identification and analysis to unveil their physiological functions

Domínguez-Rosas, E., Hernández‐Oñate, M. Á., Fernández-Valverde, S. L., & Tiznado‐Hernández, M. E. (2023) · Frontiers in Plant Science · doi:10.3389/fpls.2023.1275399 · Cited by 36

Rice SNF 2 family helicase ENL 1 is essential for syncytial endosperm development

Hara, T., Katoh, H., Ogawa, D., Kagaya, Y., Sato, Y., Kitano, H., Nagato, Y., Ishikawa, R., Ono, A., Kinoshita, T., et al. (2014) · The Plant Journal · doi:10.1111/tpj.12705 · Cited by 35

Comparative analysis of circular RNA enrichment methods

Shi, H., Zhou, Y., Jia, E., Liu, Z., Pan, M., Bai, Y., Zhao, X., & Ge, Q. (2021) · RNA Biology · doi:10.1080/15476286.2021.2012632 · Cited by 35

Long non-coding RNAs as the regulatory hubs in rice response to salt stress

Mansuri, R. M., Azizi, A.-H., Sadri, A.-H., & Shobbar, Z. (2022) · Scientific Reports · doi:10.1038/s41598-022-26133-x · Cited by 35

Identification and analysis of oxygen responsive microRNAs in the root of wild tomato (S. habrochaites)

Hou, Y., Jiang, F., Zheng, X., & Wu, Z. (2019) · BMC Plant Biology · doi:10.1186/s12870-019-1698-x · Cited by 34

PagWOX11/12a positively regulates the PagSAUR36 gene that enhances adventitious root development in poplar

Liu, R., Wen, S., Sun, T., Wang, R., Zuo, W.-T., Yang, T., Wang, C., Hu, J., Lu, M., & Wang, L. (2022) · Journal of Experimental Botany · doi:10.1093/jxb/erac345 · Cited by 34

A Combination of a Genome-Wide Association Study and a Transcriptome Analysis Reveals circRNAs as New Regulators Involved in the Response to Salt Stress in Maize

Liu, P., Zhu, Y., Liu, H., Liang, Z., Zhang, M., Zou, C., Yuan, G., Gao, S., Pan, G., Shen, Y., et al. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms23179755 · Cited by 34

Decoding the functionality of plant transcription factors

Dhatterwal, P., Sharma, N., & Prasad, M. (2024) · Journal of Experimental Botany · doi:10.1093/jxb/erae231 · Cited by 56

Non‐coding RNAs in plant stress responses: molecular insights and agricultural applications

Chen, X., Chen, Z., Watts, R., & Luo, H. (2025) · Plant Biotechnology Journal · doi:10.1111/pbi.70134 · Cited by 47

Emerging applications of gene editing technologies for the development of climate-resilient crops

Chavhan, R. L., Jaybhaye, S. G., Hinge, V. R., Deshmukh, A. S., Shaikh, U. S., Jadhav, P. K., Kadam, U. S., & Hong, J. C. (2025) · Frontiers in Genome Editing · doi:10.3389/fgeed.2025.1524767 · Cited by 55

Integrating omics approaches in livestock biotechnology: innovations in production and reproductive efficiency

Wadood, A. A., Bordbar, F., & Zhang, X. (2025) · Frontiers in Animal Science · doi:10.3389/fanim.2025.1551244 · Cited by 43

Plant Biochemistry in the Era of Omics: Integrated Omics Approaches to Unravel the Genetic Basis of Plant Stress Tolerance

Sarfraz, Z., Zarlashat, Y., Ambreen, A., Mujahid, M., Iqbal, M. S., Fatima, S. A., Iqbal, M. S., Iqbal, R., & Fiaz, S. (2025) · Plant Breeding · doi:10.1111/pbr.13277 · Cited by 38

Research Progress on the Regulation of Plant Growth, Development and Stress Responses by Non-Coding RNAs

Wu, Q., Zhou, L., Pan, X., Li, Z., & Zhao, Z. (2026) · Russian Journal of Plant Physiology · doi:10.1134/s1021443726602521

Exploring the critical role of non-coding RNAs in plant development and stress adaptation-current status and insights

Wagh, N. S., Amane, P., Kshirsagar, R., Mandal, S., Kishor, P. B. K., & Suprasanna, P. (2025) · Progress in molecular biology and translational science · doi:10.1016/bs.pmbts.2025.01.003

Plant non-coding RNAs: The new frontier for the regulation of plant development and adaptation to stress

Cao, W., Yang, L., Zhuang, M., Lv, H., Wang, Y., Zhang, Y., & Ji, J. (2024) · Plant Physiology and Biochemistry · doi:10.1016/j.plaphy.2024.108435 · Cited by 47

Non-coding RNA as a regulator for developmental processes in plants

Akbari, K., Patel, S. S., Gor, D., Balar, V., Patel, H., & Bagadiya, P. (2025) · Elsevier eBooks · doi:10.1016/b978-0-443-21784-5.00009-5

Non-coding RNAs and their role in plants: prospective omics-tools for improving growth, development and stress tolerance in field crops

Bashir, T., & Husaini, A. M. (2025) · Molecular Biology Reports · doi:10.1007/s11033-025-10305-9 · Cited by 6