Cited by 137Cancer-related molecular mechanisms researchGenetics and Neurodevelopmental DisordersRNA Research and Splicing

Long Non-Coding RNA (lncRNA) Roles in Cell Biology, Neurodevelopment and Neurological Disorders

Open access
Aliperti, Vincenza, Skonieczna, Justyna, Cerase, Andrea·2021·Non-Coding RNA

Abstract

Development is a complex process regulated both by genetic and epigenetic and environmental clues. Recently, long non-coding RNAs (lncRNAs) have emerged as key regulators of gene expression in several tissues including the brain. Altered expression of lncRNAs has been linked to several neurodegenerative, neurodevelopmental and mental disorders. The identification and characterization of lncRNAs that are deregulated or mutated in neurodevelopmental and mental health diseases are fundamental to understanding the complex transcriptional processes in brain function. Crucially, lncRNAs can be exploited as a novel target for treating neurological disorders. In our review, we first summarize the recent advances in our understanding of lncRNA functions in the context of cell biology and then discussing their association with selected neuronal development and neurological disorders.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.3390/ncrna7020036

Cites

12 of 12 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • Several recent studies have indicated that lncRNAs are crucial in the development of numerous neurological disorders, including autism, schizophrenia, and depression.

    “Several recent studies have indicated that lncRNAs are crucial in the development of numerous neurological disorders, including autism, schizophrenia, and depression.306–309”

    From Epigenetic regulation in major depression and other stress-related disorders: molecular mechanisms, clinical relevance and therapeutic potential (2023) · cites this paper as [306]

    Section 4 links aberrant lncRNA expression to autism and schizophrenia, and section 4.2 discusses lncRNAs associated with schizophrenia pathophysiology. The copy does not establish a role for lncRNAs in depression as a separate disorder: its references to depression concern a symptom of schizophrenia or synaptic long-term depression. No page numbers were provided for these passages. (LLM, conf=0.89)

    Experimental — accuracy not yet measured

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Cites

Flagged first, then by citations

Research works printed but not linked: 194

  1. [1]Gomes A.Q. Nolasco S. Soares H. Non-Coding RNAs: Multi-Tasking Molecules in the Cell Int. J. Mol. Sci. 2013 14 16010 16039 10.3390/ijms140816010 23912238 PMC3759897 · DOI
  2. [2]Derrien T. Johnson R. Bussotti G. Tanzer A. Djebali S. Tilgner H. Guernec G. Martin D. Merkel A. Knowles D.G. The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression Genome Res. 2012 22 1775 1789 10.1101/gr.132159.111 22955988 PMC3431493 · DOI
  3. [3]Roberts T.C. Morris K.V. Wood M.J.A. The role of long non-coding RNAs in neurodevelopment, brain function and neurological disease Philos. Trans. R. Soc. B Biol. Sci. 2014 369 20130507 10.1098/rstb.2013.0507 25135968 PMC4142028 · DOI
  4. [5]Chen K.-W. Chen J.-A. Functional Roles of Long Non-coding RNAs in Motor Neuron Development and Disease J. Biomed. Sci. 2020 27 38 10.1186/s12929-020-00628-z 32093746 PMC7041250 · DOI
  5. [6]Clark M.B. Amaral P.D.P. Schlesinger F.J. Dinger M. Taft R.J. Rinn J.L. Ponting C.P. Stadler P.F. Morris K.V. Morillon A. The Reality of Pervasive Transcription PLoS Biol. 2011 9 e1000625 10.1371/journal.pbio.1000625 21765801 PMC3134446 · DOI
  6. [7]Kung J.T.Y. Colognori D. Lee J.T. Long Noncoding RNAs: Past, Present, and Future Genetics 2013 193 651 669 10.1534/genetics.112.146704 23463798 PMC3583990 · DOI · Paper page
  7. [8]Beermann J. Piccoli M.-T. Viereck J. Thum T. Non-coding RNAs in Development and Disease: Background, Mechanisms, and Therapeutic Approaches Physiol. Rev. 2016 96 1297 1325 10.1152/physrev.00041.2015 27535639 · DOI
  8. [9]Chen X. Yan C.C. Zhang X. You Z.-H. Long non-coding RNAs and complex diseases: From experimental results to computational models Brief. Bioinform. 2016 18 558 576 10.1093/bib/bbw060 27345524 PMC5862301 · DOI
  9. [10]Distefano J.K. The Emerging Role of Long Noncoding RNAs in Human Disease Methods Mol. Biol. 2018 1706 91 110 10.1007/978-1-4939-7471-9_6 29423795 · DOI
  10. [11]Chen C. Tang Y. Sun H. Lin X. Jiang B. The roles of long noncoding RNAs in myocardial pathophysiology Biosci. Rep. 2019 39 20190966 10.1042/BSR20190966 31694052 PMC6851514 · DOI
  11. [12]Chen J. Ao L. Yang J. Long non-coding RNAs in diseases related to inflammation and immunity Ann. Transl. Med. 2019 7 494 10.21037/atm.2019.08.37 31700930 PMC6803193 · DOI
  12. [13]Fernandes J.C.R. Acuña S.M. Aoki J.I. Floeter-Winter L.M. Muxel S.M. Long Non-Coding RNAs in the Regulation of Gene Expression: Physiology and Disease Non-Coding RNA 2019 5 17 10.3390/ncrna5010017 30781588 PMC6468922 · DOI
  13. [14]Mongelli A. Martelli F. Farsetti A. Gaetano C. The Dark That Matters: Long Non-coding RNAs as Master Regulators of Cellular Metabolism in Non-communicable Diseases Front. Physiol. 2019 10 369 10.3389/fphys.2019.00369 31191327 PMC6539782 · DOI
  14. [15]Sparber P. Filatova A. Khantemirova M. Skoblov M. The role of long non-coding RNAs in the pathogenesis of hereditary diseases BMC Med. Genom. 2019 12 Suppl. S2 42 10.1186/s12920-019-0487-6 PMC6416829 30871545 · DOI
  15. [16]Jaé N. Dimmeler S. Noncoding RNAs in Vascular Diseases Circ. Res. 2020 126 1127 1145 10.1161/CIRCRESAHA.119.315938 32324505 · DOI
  16. [17]Sun B. Liu C. Zhang L. Luo G. Liang S. Research progress on the interactions between long non-coding RNAs and microRNAs in human cancer (Review) Oncol. Lett. 2019 19 595 605 10.3892/ol.2019.11182 31897175 PMC6923957 · DOI
  17. [18]Wijesinghe S.N. Nicholson T. Tsintzas K. Jones S.W. Involvements of long noncoding RNAs in obesity-associated inflammatory diseases Obes. Rev. 2021 22 13156 10.1111/obr.13156 33078547 · DOI
  18. [19]Qureshi I.A. Mehler M.F. Emerging roles of non-coding RNAs in brain evolution, development, plasticity and disease Nat. Rev. Neurosci. 2012 13 528 541 10.1038/nrn3234 22814587 PMC3478095 · DOI
  19. [20]Dahariya S. Paddibhatla I. Kumar S. Raghuwanshi S. Pallepati A. Gutti R.K. Long non-coding RNA: Classification, biogenesis and functions in blood cells Mol. Immunol. 2019 112 82 92 10.1016/j.molimm.2019.04.011 31079005 · DOI
  20. [21]Nie L. Wu H.-J. Hsu J.-M. Chang S.-S. Labaff A.M. Li C.-W. Wang Y. Hsu J.L. Hung M.-C. Long non-coding RNAs: Versatile master regulators of gene expression and crucial players in cancer Am. J. Transl. Res. 2012 4 127 150 22611467 PMC3353529
  21. [22]Tuck A.C. Tollervey D. RNA in pieces Trends Genet. 2011 27 422 432 10.1016/j.tig.2011.06.001 21741109 · DOI
  22. [23]Andersen R. Lim D.A. Forging our understanding of lncRNAs in the brain Cell Tissue Res. 2018 371 55 71 10.1007/s00441-017-2711-z 29079882 · DOI
  23. [24]Saxena A. Carninci P. Long non-coding RNA modifies chromatin: Epigenetic silencing by long non-coding RNAs BioEssays 2011 33 830 839 10.1002/bies.201100084 21915889 PMC3258546 · DOI
  24. [25]Mercer T.R. Mattick J.S. Structure and function of long noncoding RNAs in epigenetic regulation Nat. Struct. Mol. Biol. 2013 20 300 307 10.1038/nsmb.2480 23463315 · DOI
  25. [26]Wu P. Zuo X. Deng H. Liu X. Liu L. Ji A. Roles of long noncoding RNAs in brain development, functional diversification and neurodegenerative diseases Brain Res. Bull. 2013 97 69 80 10.1016/j.brainresbull.2013.06.001 23756188 · DOI
  26. [27]Tsagakis I. Douka K. Birds I. Aspden J.L. Long non-coding RNAs in development and disease: Conservation to mechanisms J. Pathol. 2020 250 480 495 10.1002/path.5405 32100288 PMC8638664 · DOI
  27. [28]Zhang L. Dong Y. Wang Y. Gao J. Lv J. Sun J. Li M. Wang M. Zhao Z. Wang J. Long non-codingRNAs in ocular diseases: New and potential therapeutic targets FEBS J. 2019 286 2261 2272 10.1111/febs.14827 30927500 · DOI
  28. [29]Wan P. Su W. Zhuo Y. The Role of Long Noncoding RNAs in Neurodegenerative Diseases Mol. Neurobiol. 2016 54 2012 2021 10.1007/s12035-016-9793-6 26910817 · DOI
  29. [30]Dykes I.M. Emanueli C. Transcriptional and Post-transcriptional Gene Regulation by Long Non-coding RNA Genom. Proteom. Bioinform. 2017 15 177 186 10.1016/j.gpb.2016.12.005 28529100 PMC5487525 · DOI
  30. [31]Ponjavic J. Ponting C.P. Lunter G. Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs Genome Res. 2007 17 556 565 10.1101/gr.6036807 17387145 PMC1855172 · DOI
  31. [32]Nesterova T.B. Slobodyanyuk S.Y. Elisaphenko E.A. Shevchenko A.I. Johnston C. Pavlova M.E. Rogozin I.B. Kolesnikov N.N. Brockdorff N. Zakian S.M. Characterization of the Genomic Xist Locus in Rodents Reveals Conservation of Overall Gene Structure and Tandem Repeats but Rapid Evolution of Unique Sequence Genome Res. 2001 11 833 849 10.1101/gr.174901 11337478 PMC311126 · DOI
  32. [33]Chodroff R.A. Goodstadt L. Sirey T.M. Oliver P.L. Davies K.E. Green E.D. Molnár Z. Ponting C.P. Long noncoding RNA genes: Conservation of sequence and brain expression among diverse amniotes Genome Biol. 2010 11 R72 10.1186/gb-2010-11-7-r72 20624288 PMC2926783 · DOI
  33. [34]Kirk J.M. Kim S.O. Inoue K. Smola M.J. Lee D.M. Schertzer M. Wooten J.S. Baker A.R. Sprague D. Collins D.W. Functional classification of long non-coding RNAs by k-mer content Nat. Genet. 2018 50 1474 1482 10.1038/s41588-018-0207-8 30224646 PMC6262761 · DOI
  34. [35]Sprague D. Waters S. Kirk J.M. Wang J.R. Samollow P.B. Waters P.D. Calabrese J.M. Nonlinear sequence similarity between the Xist and Rsx long noncoding RNAs suggests shared functions of tandem repeat domains RNA 2019 25 1004 1019 10.1261/rna.069815.118 31097619 PMC6633197 · DOI
  35. [36]Smith K.N. Miller S.C. Varani G. Calabrese J.M. Magnuson T. Multimodal Long Noncoding RNA Interaction Networks: Control Panels for Cell Fate Specification Genet. 2019 213 1093 1110 10.1534/genetics.119.302661 31796550 PMC6893379 · DOI
  36. [37]Chillón I. Marcia M. The molecular structure of long non-coding RNAs: Emerging patterns and functional implications Crit. Rev. Biochem. Mol. Biol. 2020 55 662 690 10.1080/10409238.2020.1828259 33043695 · DOI
  37. [38]Wutz A. Rasmussen T. Jaenisch R. Chromosomal silencing and localization are mediated by different domains of Xist RNA Nat. Genet. 2002 30 167 174 10.1038/ng820 11780141 · DOI
  38. [39]Fang R. Moss W.N. Rutenberg-Schoenberg M. Simon M.D. Probing Xist RNA Structure in Cells Using Targeted Structure-Seq PLoS Genet. 2015 11 e1005668 10.1371/journal.pgen.1005668 26646615 PMC4672913 · DOI
  39. [40]Smola M.J. Christy T.W. Inoue K. Nicholson C.O. Friedersdorf M. Keene J.D. Lee D.M. Calabrese J.M. Weeks K.M. SHAPE reveals transcript-wide interactions, complex structural domains, and protein interactions across the Xist lncRNA in living cells Proc. Natl. Acad. Sci. USA 2016 113 10322 10327 10.1073/pnas.1600008113 27578869 PMC5027438 · DOI
  40. [41]Liu F. Somarowthu S. Pyle A.M. Visualizing the secondary and tertiary architectural domains of lncRNA RepA Nat. Chem. Biol. 2017 13 282 289 10.1038/nchembio.2272 28068310 PMC6432788 · DOI
  41. [42]Somarowthu S. Legiewicz M. Chillón I. Marcia M. Liu F. Pyle A.M. HOTAIR Forms an Intricate and Modular Secondary Structure Mol. Cell 2015 58 353 361 10.1016/j.molcel.2015.03.006 25866246 PMC4406478 · DOI
  42. [43]Chillón I. Pyle A.M. Inverted repeat Alu elements in the human lincRNA-p21 adopt a conserved secondary structure that regulates RNA function Nucleic Acids Res. 2016 44 9462 9471 10.1093/nar/gkw599 27378782 PMC5100600 · DOI
  43. [44]Pintacuda G. Young A.N. Cerase A. Function by Structure: Spotlights on Xist Long Non-coding RNA Front. Mol. Biosci. 2017 4 90 10.3389/fmolb.2017.00090 29302591 PMC5742192 · DOI
  44. [45]Cirillo D. Blanco M. Armaos A. Buness A. Avner P. Guttman M. Cerase A. Tartaglia G.G. Quantitative predictions of protein interactions with long noncoding RNAs Nat. Methods 2017 14 5 6 10.1038/nmeth.4100 28032625 · DOI
  45. [46]Clark M.B. Johnston R.L. Inostroza-Ponta M. Fox A.H. Fortini E. Moscato P. Dinger M.E. Mattick J.S. Genome-wide analysis of long noncoding RNA stability Genome Res. 2012 22 885 898 10.1101/gr.131037.111 22406755 PMC3337434 · DOI
  46. [48]Pagani M. Rossetti G. Panzeri I. De Candia P. Bonnal R.J.P. Rossi R.L. Geginat J. Abrignani S. Role of microRNAs and long-non-coding RNAs in CD4+T-cell differentiation Immunol. Rev. 2013 253 82 96 10.1111/imr.12055 23550640 · DOI
  47. [49]Geisler S. Coller J. RNA in unexpected places: Long non-coding RNA functions in diverse cellular contexts Nat. Rev. Mol. Cell Biol. 2013 14 699 712 10.1038/nrm3679 24105322 PMC4852478 · DOI
  48. [50]Clark B. Eblackshaw S. Long non-coding RNA-dependent transcriptional regulation in neuronal development and disease Front. Genet. 2014 5 164 10.3389/fgene.2014.00164 24936207 PMC4047558 · DOI
  49. [51]Park J.Y. Lee J.E. Park J.B. Yoo H. Lee S.-H. Kim J.H. Roles of Long Non-Coding RNAs on Tumorigenesis and Glioma Development Brain Tumor Res. Treat. 2014 2 1 6 10.14791/btrt.2014.2.1.1 24926466 PMC4049559 · DOI
  50. [52]Van De Vondervoort I.I.G.M. Gordebeke P.M. Ekhoshab N. Tiesinga P.H.E. Buitelaar J.K. Ekozicz T. Easchrafi A. Glennon J.C. Long non-coding RNAs in neurodevelopmental disorders Front. Mol. Neurosci. 2013 6 53 10.3389/fnmol.2013.00053 24415997 PMC3874560 · DOI
  51. [53]Taft R.J. Pang K.C. Mercer T.R. Dinger M. Mattick J.S. Non-coding RNAs: Regulators of disease J. Pathol. 2009 220 126 139 10.1002/path.2638 19882673 · DOI
  52. [54]Petazzi P. Sandoval J. Szczesna K. Jorge O.C. Roa L. Sayols S. Gomez A. Huertas D. Esteller M. Dysregulation of the long non-coding RNA transcriptome in a Rett syndrome mouse model RNA Biol. 2013 10 1197 1203 10.4161/rna.24286 23611944 PMC3849168 · DOI
  53. [55]Ziats M.N. Rennert O.M. Aberrant Expression of Long Noncoding RNAs in Autistic Brain J. Mol. Neurosci. 2012 49 589 593 10.1007/s12031-012-9880-8 22949041 PMC3566384 · DOI
  54. [56]Pastori C. Peschansky V. Barbouth D. Mehta A. Silva J.P. Wahlestedt C. Comprehensive analysis of the transcriptional landscape of the human FMR1 gene reveals two new long noncoding RNAs differentially expressed in Fragile X syndrome and Fragile X-associated tremor/ataxia syndrome Hum. Genet. 2014 133 59 67 10.1007/s00439-013-1356-6 24005575 PMC3898532 · DOI
  55. [57]Zhang S.-F. Gao J. Liu C.-M. The Role of Non-Coding RNAs in Neurodevelopmental Disorders Front. Genet. 2019 10 1033 10.3389/fgene.2019.01033 31824553 PMC6882276 · DOI
  56. [58]Bánfai B. Jia H. Khatun J. Wood E. Risk B. Gundling W.E. Kundaje A. Gunawardena H.P. Yu Y. Xie L. Long noncoding RNAs are rarely translated in two human cell lines Genome Res. 2012 22 1646 1657 10.1101/gr.134767.111 22955977 PMC3431482 · DOI
  57. [61]Bazzini A.A. Johnstone T. Christiano R. Mackowiak S. Obermayer B. Fleming E.S. Vejnar C.E. Lee M.T. Rajewsky N. Walther T. Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation EMBO J. 2014 33 981 993 10.1002/embj.201488411 24705786 PMC4193932 · DOI
  58. [62]Ruiz-Orera J. Messeguer X. Subirana J. Alba M.M. Long non-coding RNAs as a source of new peptides eLife 2014 3 e03523 10.7554/eLife.03523 25233276 PMC4359382 · DOI
  59. [63]Vance K.W. Ponting C.P. Transcriptional regulatory functions of nuclear long noncoding RNAs Trends Genet. 2014 30 348 355 10.1016/j.tig.2014.06.001 24974018 PMC4115187 · DOI
  60. [64]Bhat S.A. Ahmad S.M. Mumtaz P.T. Malik A.A. Dar M.A. Urwat U. Shah R.A. Ganai N. Long non-coding RNAs: Mechanism of action and functional utility Non-Coding RNA Res. 2016 1 43 50 10.1016/j.ncrna.2016.11.002 30159410 PMC6096411 · DOI
  61. [65]Li L. Zhuang Y. Zhao X. Li X. Long Non-coding RNA in Neuronal Development and Neurological Disorders Front. Genet. 2019 9 744 10.3389/fgene.2018.00744 30728830 PMC6351443 · DOI
  62. [66]Wang K.C. Chang H.Y. Molecular Mechanisms of Long Noncoding RNAs Mol. Cell 2011 43 904 914 10.1016/j.molcel.2011.08.018 21925379 PMC3199020 · DOI
  63. [67]Fang Y. Fullwood M.J. Roles, Functions, and Mechanisms of Long Non-coding RNAs in Cancer Genom. Proteom. Bioinform. 2016 14 42 54 10.1016/j.gpb.2015.09.006 26883671 PMC4792843 · DOI
  64. [68]Tripathi V. Ellis J.D. Shen Z. Song D.Y. Pan Q. Watt A.T. Freier S.M. Bennett C.F. Sharma A. Bubulya P.A. The Nuclear-Retained Noncoding RNA MALAT1 Regulates Alternative Splicing by Modulating SR Splicing Factor Phosphorylation Mol. Cell 2010 39 925 938 10.1016/j.molcel.2010.08.011 20797886 PMC4158944 · DOI
  65. [69]Gong C. Maquat L.E. lncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3′ UTRs via Alu elements Nature 2011 470 284 288 10.1038/nature09701 21307942 PMC3073508 · DOI
  66. [70]Carrieri C. Cimatti L. Biagioli M. Beugnet A. Zucchelli S. Fedele S. Pesce E. Ferrer I. Collavin L. Santoro C. Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat Nature 2012 491 454 457 10.1038/nature11508 23064229 · DOI
  67. [71]Faghihi M.A. Zhang M. Huang J. Modarresi F. Van Der Brug M.P. Nalls M.A. Cookson M.R. St-Laurent G. Wahlestedt C. Evidence for natural antisense transcript-mediated inhibition of microRNA function Genome Biol. 2010 11 R56 10.1186/gb-2010-11-5-r56 20507594 PMC2898074 · DOI
  68. [72]Gudenas B.L. Wang L. Prediction of LncRNA Subcellular Localization with Deep Learning from Sequence Features Sci. Rep. 2018 8 16385 10.1038/s41598-018-34708-w 30401954 PMC6219567 · DOI
  69. [73]Zhang B. Gunawardane L. Niazi F. Jahanbani F. Chen X. Valadkhan S. A Novel RNA Motif Mediates the Strict Nuclear Localization of a Long Noncoding RNA Mol. Cell. Biol. 2014 34 2318 2329 10.1128/MCB.01673-13 24732794 PMC4054287 · DOI
  70. [74]Ahmad A. Lin H. Shatabda S. Locate-R: Subcellular localization of long non-coding RNAs using nucleotide compositions Genomics 2020 112 2583 2589 10.1016/j.ygeno.2020.02.011 32068122 · DOI
  71. [75]Cerase A. Tartaglia G.G. Long non-coding RNA-polycomb intimate rendezvous Open Biol. 2020 10 200126 10.1098/rsob.200126 32898472 PMC7536065 · DOI
  72. [76]Fejes-Toth K. Sotirova V. Sachidanandam R. Assaf G. Hannon G.J. Kapranov P. Foissac S. Willingham A.T. Duttagupta R. Dumais E. Post-transcriptional processing generates a diversity of 5′-modified long and short RNAs Nature 2009 457 1028 1032 10.1038/nature07759 19169241 PMC2719882 · DOI
  73. [77]Kapranov P. Laurent G.S. Raz T. Ozsolak F. Reynolds C.P. Sorensen P.H.B. Reaman G. Milos P. Arceci R.J. Thompson J.F. The majority of total nuclear-encoded non-ribosomal RNA in a human cell is ‘dark matter’ un-annotated RNA BMC Biol. 2010 8 1 10.1186/1741-7007-8-149 21176148 PMC3022773 · DOI
  74. [78]Poynter S.T. Kadoch C. Polycomb and trithorax opposition in development and disease Wiley Interdiscip. Rev. Dev. Biol. 2016 5 659 688 10.1002/wdev.244 27581385 PMC5518792 · DOI
  75. [79]Schuettengruber B. Bourbon H.-M. Di Croce L. Cavalli G. Genome Regulation by Polycomb and Trithorax: 70 Years and Counting Cell 2017 171 34 57 10.1016/j.cell.2017.08.002 28938122 · DOI · Paper page
  76. [80]Statello L. Guo C.-J. Chen L.-L. Huarte M. Gene regulation by long non-coding RNAs and its biological functions Nat. Rev. Mol. Cell Biol. 2021 22 96 118 10.1038/s41580-020-00315-9 33353982 PMC7754182 · DOI · Paper page
  77. [81]Lee J.T. Gracefully ageing at 50, X-chromosome inactivation becomes a paradigm for RNA and chromatin control Nat. Rev. Mol. Cell Biol. 2011 12 815 826 10.1038/nrm3231 22108600 · DOI
  78. [82]Bousard A. Raposo A.C. Żylicz J.J. Picard C. Pires V.B. Qi Y. Gil C. Syx L. Chang H.Y. Heard E. The role of Xist -mediated Polycomb recruitment in the initiation of X-chromosome inactivation EMBO Rep. 2019 20 e48019 10.15252/embr.201948019 31456285 PMC6776897 · DOI
  79. [83]Dixon-McDougall T. Brown C.J. Independent domains for recruitment of PRC1 and PRC2 by human XIST PLoS Genet. 2021 17 e1009123 10.1371/journal.pgen.1009123 33750950 PMC8016261 · DOI
  80. [84]Wang C.-Y. Colognori D. Sunwoo H. Wang D. Lee J.T. PRC1 collaborates with SMCHD1 to fold the X-chromosome and spread Xist RNA between chromosome compartments Nat. Commun. 2019 10 2950 10.1038/s41467-019-10755-3 31270318 PMC6610634 · DOI
  81. [85]Willingham A.T. Orth A.P. Batalov S. Peters E.C. Wen B.G. Aza-Blanc P. Hogenesch J.B. Schultz P.G. A Strategy for Probing the Function of Noncoding RNAs Finds a Repressor of NFAT Science 2005 309 1570 1573 10.1126/science.1115901 16141075 · DOI
  82. [86]Shamovsky I. Ivannikov M. Kandel E.S. Gershon D. Nudler E. RNA-mediated response to heat shock in mammalian cells Nature 2006 440 556 560 10.1038/nature04518 16554823 · DOI
  83. [87]Feng J. Bi C. Clark B. Mady R. Shah P. Kohtz J.D. The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator Genes Dev. 2006 20 1470 1484 10.1101/gad.1416106 16705037 PMC1475760 · DOI · Paper page
  84. [89]Turner M. Galloway A. Vigorito E. Noncoding RNA and its associated proteins as regulatory elements of the immune system Nat. Immunol. 2014 15 484 491 10.1038/ni.2887 24840979 · DOI
  85. [90]Sado T. Hoki Y. Sasaki H. Tsix Silences Xist through Modification of Chromatin Structure Dev. Cell 2005 9 159 165 10.1016/j.devcel.2005.05.015 15992549 · DOI
  86. [91]Briggs J.A. Wolvetang E.J. Mattick J.S. Rinn J.L. Barry G. Mechanisms of Long Non-coding RNAs in Mammalian Nervous System Development, Plasticity, Disease, and Evolution Neuron 2015 88 861 877 10.1016/j.neuron.2015.09.045 26637795 · DOI
  87. [92]Romero-Barrios N. Legascue M.F. Benhamed M. Ariel F. Crespi M. Splicing regulation by long noncoding RNAs Nucleic Acids Res. 2018 46 2169 2184 10.1093/nar/gky095 29425321 PMC5861421 · DOI
  88. [93]Zimmer-Bensch G. Emerging Roles of Long Non-Coding RNAs as Drivers of Brain Evolution Cells 2019 8 1399 10.3390/cells8111399 31698782 PMC6912723 · DOI
  89. [94]Cooper D.R. Carter G. Li P. Patel R. Watson J.E. Patel N.A. Long Non-Coding RNA NEAT1 Associates with SRp40 to Temporally Regulate PPARγ2 Splicing during Adipogenesis in 3T3-L1 Cells Genes 2014 5 1050 1063 10.3390/genes5041050 25437750 PMC4276926 · DOI
  90. [95]Tsuiji H. Yoshimoto R. Hasegawa Y. Furuno M. Yoshida M. Nakagawa S. Competition between a noncoding exon and introns: Gomafu contains tandem UACUAAC repeats and associates with splicing factor-1 Genes Cells 2011 16 479 490 10.1111/j.1365-2443.2011.01502.x 21463453 PMC3116199 · DOI
  91. [96]Yoshimoto R. Mayeda A. Yoshida M. Nakagawa S. MALAT1 long non-coding RNA in cancer Biochim. Biophys. Acta 2016 1859 192 199 10.1016/j.bbagrm.2015.09.012 26434412 · DOI
  92. [97]Faghihi M.A. Modarresi F. Khalil A.M. Wood D.E. Sahagan B.G. Morgan T.E. Finch C.E. St. Laurent G. III Kenny P.J. Wahlestedt C. Expression of a noncoding RNA is elevated in Alzheimer’s disease and drives rapid feed-forward regulation of β-secretase Nat. Med. 2008 14 723 730 10.1038/nm1784 18587408 PMC2826895 · DOI · Paper page
  93. [98]Salmena L. Poliseno L. Tay Y. Kats L. Pandolfi P.P. A ceRNA Hypothesis: The Rosetta Stone of a Hidden RNA Language? Cell 2011 146 353 358 10.1016/j.cell.2011.07.014 21802130 PMC3235919 · DOI · Paper page
  94. [99]Wang Y. Xu Z. Jiang J. Xu C. Kang J. Xiao L. Wu M. Xiong J. Guo X. Liu H. Endogenous miRNA Sponge lincRNA-RoR Regulates Oct4, Nanog, and Sox2 in Human Embryonic Stem Cell Self-Renewal Dev. Cell 2013 25 69 80 10.1016/j.devcel.2013.03.002 23541921 · DOI
  95. [100]Kallen A. Zhou X.-B. Xu J. Qiao C. Ma J. Yan L. Lu L. Liu C. Yi J.-S. Zhang H. The Imprinted H19 LncRNA Antagonizes Let-7 MicroRNAs Mol. Cell 2013 52 101 112 10.1016/j.molcel.2013.08.027 24055342 PMC3843377 · DOI
  96. [101]Zhang X. Wang W. Zhu W. Dong J. Cheng Y. Yin Z. Shen F. Mechanisms and Functions of Long Non-Coding RNAs at Multiple Regulatory Levels Int. J. Mol. Sci. 2019 20 5573 10.3390/ijms20225573 31717266 PMC6888083 · DOI
  97. [102]Li D. Liu X. Zhou J. Hu J. Zhang D. Liu J. Qiao Y. Zhan Q. Long noncoding RNA HULC modulates the phosphorylation of YB-1 through serving as a scaffold of extracellular signal-regulated kinase and YB-1 to enhance hepatocarcinogenesis Hepatology 2017 65 1612 1627 10.1002/hep.29010 28027578 · DOI
  98. [103]Thibaut F. The role of sex and gender in neuropsychiatric disorders Dialogues Clin. Neurosci. 2016 18 351 352 10.31887/dcns.2016.18.4/fthibaut 28179806 PMC5286720 · DOI
  99. [104]Weber C.M. Clyne A.M. Sex differences in the blood–brain barrier and neurodegenerative diseases APL Bioeng. 2021 5 011509 10.1063/5.0035610 33758788 PMC7968933 · DOI
  100. [105]Rackham O. Shearwood A.-M.J. Mercer T.R. Davies S.M. Mattick J.S. Filipovska A. Long noncoding RNAs are generated from the mitochondrial genome and regulated by nuclear-encoded proteins RNA 2011 17 2085 2093 10.1261/rna.029405.111 22028365 PMC3222122 · DOI
  101. [107]Ma Q.-L. Galasko D.R. Ringman J.M. Vinters H.V. Edland S.D. Pomakian J. Ubeda O.J. Rosario E.R. Teter B. Frautschy S.A. Reduction of SorLA/LR11, a Sorting Protein Limiting β-Amyloid Production, in Alzheimer Disease Cerebrospinal Fluid Arch. Neurol. 2009 66 448 457 10.1001/archneurol.2009.22 19364929 PMC2742778 · DOI
  102. [108]Ciarlo E. Massone S. Penna I. Nizzari M. Gigoni A. Dieci G. Russo C. Florio T. Cancedda R. Pagano A. An intronic ncRNA-dependent regulation of SORL1 expression affecting Aβ formation is upregulated in post-mortem Alzheimer’s disease brain samples Dis. Model. Mech. 2013 6 424 433 10.1242/dmm.009761 22996644 PMC3597024 · DOI
  103. [109]Luo Q. Chen Y. Long noncoding RNAs and Alzheimer’s disease Clin. Interv. Aging 2016 11 867 872 10.2147/CIA.S107037 27418812 PMC4933566 · DOI
  104. [110]Massone S. Vassallo I. Fiorino G. Castelnuovo M. Barbieri F. Borghi R. Tabaton M. Robello M. Gatta E. Russo C. 17A, a novel non-coding RNA, regulates GABA B alternative splicing and signaling in response to inflammatory stimuli and in Alzheimer disease Neurobiol. Dis. 2011 41 308 317 10.1016/j.nbd.2010.09.019 20888417 · DOI
  105. [111]Gavazzo P. Vassalli M. Costa D. Pagano A. Novel ncRNAs transcribed by Pol III and elucidation of their functional relevance by biophysical approaches Front. Cell. Neurosci. 2013 7 203 10.3389/fncel.2013.00203 24223537 PMC3819595 · DOI
  106. [112]Buggia-Prévot V. Thinakaran G. Sorting the Role of SORLA in Alzheimer’s Disease Sci. Transl. Med. 2014 6 223fs8 10.1126/scitranslmed.3008562 24523319 · DOI
  107. [113]Massone S. Ciarlo E. Vella S. Nizzari M. Florio T. Russo C. Cancedda R. Pagano A. NDM29, a RNA polymerase III-dependent non coding RNA, promotes amyloidogenic processing of APP and amyloid β secretion Biochim. Biophys. Acta 2012 1823 1170 1177 10.1016/j.bbamcr.2012.05.001 22580042 · DOI
  108. [114]Mus E. Hof P.R. Tiedge H. Dendritic BC200 RNA in aging and in Alzheimer’s disease Proc. Natl. Acad. Sci. USA 2007 104 10679 10684 10.1073/pnas.0701532104 17553964 PMC1965572 · DOI
  109. [115]Lin D. Pestova T.V. Hellen C.U.T. Tiedge H. Translational Control by a Small RNA: Dendritic BC1 RNA Targets the Eukaryotic Initiation Factor 4A Helicase Mechanism Mol. Cell. Biol. 2008 28 3008 3019 10.1128/MCB.01800-07 18316401 PMC2293081 · DOI
  110. [116]Iacoangeli A. Bianchi R. Tiedge H. Regulatory RNAs in brain function and disorders Brain Res. 2010 1338 36 47 10.1016/j.brainres.2010.03.042 20307503 PMC3524968 · DOI
  111. [117]Wang Z. Zhao Y. Xu N. Zhang S. Wang S. Mao Y. Zhu Y. Li B. Jiang Y. Tan Y. NEAT1 regulates neuroglial cell mediating Aβ clearance via the epigenetic regulation of endocytosis-related genes expression Cell. Mol. Life Sci. 2019 76 3005 3018 10.1007/s00018-019-03074-9 31006037 PMC6647258 · DOI
  112. [118]Zhao M.-Y. Wang G.-Q. Wang N.-N. Yu Q.-Y. Liu R.-L. Shi W.-Q. The long-non-coding RNA NEAT1 is a novel target for Alzheimer’s disease progression via miR-124/BACE1 axis Neurol. Res. 2019 41 489 497 10.1080/01616412.2018.1548747 31014193 · DOI
  113. [119]Clemson C.M. Hutchinson J.N. Sara S.A. Ensminger A.W. Fox A.H. Chess A. Lawrence J.B. An Architectural Role for a Nuclear Noncoding RNA: NEAT1 RNA Is Essential for the Structure of Paraspeckles Mol. Cell 2009 33 717 726 10.1016/j.molcel.2009.01.026 19217333 PMC2696186 · DOI · Paper page
  114. [120]Suzuki H. Shibagaki Y. Hattori S. Matsuoka M. C9-ALS/FTD-linked proline–arginine dipeptide repeat protein associates with paraspeckle components and increases paraspeckle formation Cell Death Dis. 2019 10 746 10.1038/s41419-019-1983-5 31582731 PMC6776546 · DOI
  115. [121]An H. Tan J.T. Shelkovnikova T.A. Stress granules regulate stress-induced paraspeckle assembly J. Cell Biol. 2019 218 4127 4140 10.1083/jcb.201904098 31636118 PMC6891081 · DOI
  116. [123]Wen X. Tan W. Westergard T. Krishnamurthy K. Markandaiah S.S. Shi Y. Lin S. Shneider N. Monaghan J. Pandey U.B. Antisense Proline-Arginine RAN Dipeptides Linked to C9ORF72-ALS/FTD Form Toxic Nuclear Aggregates that Initiate In Vitro and In Vivo Neuronal Death Neuron 2014 84 1213 1225 10.1016/j.neuron.2014.12.010 25521377 PMC4632245 · DOI
  117. [124]Maharjan N. Künzli C. Buthey K. Saxena S. C9ORF72 Regulates Stress Granule Formation and Its Deficiency Impairs Stress Granule Assembly, Hypersensitizing Cells to Stress Mol. Neurobiol. 2016 54 3062 3077 10.1007/s12035-016-9850-1 27037575 · DOI
  118. [125]Swinnen B. Bento-Abreu A. Gendron T.F. Boeynaems S. Bogaert E. Nuyts R. Timmers M. Scheveneels W. Hersmus N. Wang J. A zebrafish model for C9orf72 ALS reveals RNA toxicity as a pathogenic mechanism Acta Neuropathol. 2018 135 427 443 10.1007/s00401-017-1796-5 29302778 · DOI
  119. [126]Bampton A. Gittings L. Fratta P. Lashley T. Gatt A. The role of hnRNPs in frontotemporal dementia and amyotrophic lateral sclerosis Acta Neuropathol. 2020 140 599 623 10.1007/s00401-020-02203-0 32748079 PMC7547044 · DOI
  120. [127]Mizielinska S. Lashley T. Norona F.E. Clayton E.L. Ridler C.E. Fratta P. Isaacs A.M. C9orf72 frontotemporal lobar degeneration is characterised by frequent neuronal sense and antisense RNA foci Acta Neuropathol. 2013 126 845 857 10.1007/s00401-013-1200-z 24170096 PMC3830745 · DOI
  121. [128]Chung C.-Y. Berson A. Kennerdell J.R. Sartoris A. Unger T. Porta S. Kim H.-J. Smith E.R. Shilatifard A. Van Deerlin V. Aberrant activation of non-coding RNA targets of transcriptional elongation complexes contributes to TDP-43 toxicity Nat. Commun. 2018 9 4406 10.1038/s41467-018-06543-0 30353006 PMC6199344 · DOI
  122. [129]Li P.P. Sun X. Xia G. Arbez N. Paul S. Zhu S. Peng H.B. Ross C.A. Koeppen A.H. Margolis R.L. ATXN2-AS, a gene antisense toATXN2, is associated with spinocerebellar ataxia type 2 and amyotrophic lateral sclerosis Ann. Neurol. 2016 80 600 615 10.1002/ana.24761 27531668 PMC6555153 · DOI
  123. [130]Gagliardi S. Pandini C. Garofalo M. Bordoni M. Pansarasa O. Cereda C. Long non coding RNAs and ALS: Still much to do Non-Coding RNA Res. 2018 3 226 231 10.1016/j.ncrna.2018.11.004 30533570 PMC6260474 · DOI
  124. [131]Breijyeh Z. Karaman R. Comprehensive Review on Alzheimer’s Disease: Causes and Treatment Molecules 2020 25 5789 10.3390/molecules25245789 PMC7764106 33302541 · DOI · Paper page
  125. [132]Fan L. Mao C. Hu X. Zhang S. Yang Z. Hu Z. Sun H. Fan Y. Dong Y. Yang J. New Insights Into the Pathogenesis of Alzheimer’s Disease Front. Neurol. 2020 10 1312 10.3389/fneur.2019.01312 31998208 PMC6965067 · DOI
  126. [133]Maoz R. Garfinkel B. Soreq H. Alzheimer’s Disease and ncRNAs Adv. Exp. Med. Biol. 2017 978 337 361 10.1007/978-3-319-53889-1_18 28523555 · DOI
  127. [134]Millan M.J. Linking deregulation of non-coding RNA to the core pathophysiology of Alzheimer’s disease: An integrative review Prog. Neurobiol. 2017 156 1 68 10.1016/j.pneurobio.2017.03.004 28322921 · DOI
  128. [135]Cao M. Li H. Zhao J. Cui J. Hu G. Identification of age- and gender-associated long noncoding RNAs in the human brain with Alzheimer’s disease Neurobiol. Aging 2019 81 116 126 10.1016/j.neurobiolaging.2019.05.023 31280115 PMC6732230 · DOI
  129. [136]Hong H. Mo Y. Li D. Xu Z. Liao Y. Yin P. Liu X. Xia Y. Fang J. Wang Q. Aberrant Expression Profiles of lncRNAs and Their Associated Nearby Coding Genes in the Hippocampus of the SAMP8 Mouse Model with AD Mol. Ther. Nucleic Acids 2020 20 140 154 10.1016/j.omtn.2020.02.008 32169802 PMC7066064 · DOI
  130. [137]Wang D. Wang P. Bian X. Xu S. Zhou Q. Zhang Y. Ding M. Han M. Huang L. Bi J. Elevated plasma levels of exosomal BACE1-AS combined with the volume and thickness of the right entorhinal cortex may serve as a biomarker for the detection of Alzheimer’s disease Mol. Med. Rep. 2020 22 227 238 10.3892/mmr.2020.11118 32377715 PMC7248487 · DOI
  131. [138]Ma N. Tie C. Yu B. Zhang W. Wan J. Identifying lncRNA–miRNA–mRNA networks to investigate Alzheimer’s disease pathogenesis and therapy strategy Aging 2020 12 2897 2920 10.18632/aging.102785 32035423 PMC7041741 · DOI
  132. [139]Yang B. Xia Z.-A. Zhong B. Xiong X. Sheng C. Wang Y. Gong W. Cao Y. Wang Z. Peng W. Distinct Hippocampal Expression Profiles of Long Non-coding RNAs in an Alzheimer’s Disease Model Mol. Neurobiol. 2017 54 4833 4846 10.1007/s12035-016-0038-5 27501805 PMC5533868 · DOI
  133. [140]Shafi O. Inverse relationship between Alzheimer’s disease and cancer, and other factors contributing to Alzheimer’s disease: A systematic review BMC Neurol. 2016 16 236 10.1186/s12883-016-0765-2 27875990 PMC5120447 · DOI · Paper page
  134. [141]Feng L. Liao Y.-T. He J.-C. Xie C.-L. Chen S.-Y. Fan H.-H. Su Z.-P. Wang Z. Plasma long non-coding RNA BACE1 as a novel biomarker for diagnosis of Alzheimer disease BMC Neurol. 2018 18 4 10.1186/s12883-017-1008-x 29316899 PMC5761117 · DOI
  135. [142]Zhou Y. Xu Z. Yu Y. Cao J. Qiao Y. Qiao H. Suo G. Comprehensive analysis of the lncRNA-associated ceRNA network identifies neuroinflammation biomarkers for Alzheimer’s disease Mol. Omics 2019 15 459 469 10.1039/C9MO00129H 31755891 · DOI
  136. [143]Ge Y. Song X. Liu J. Liu C. Xu C. The Combined Therapy of Berberine Treatment with lncRNA BACE1-AS Depletion Attenuates Aβ25–35 Induced Neuronal Injury through Regulating the Expression of miR-132-3p in Neuronal Cells Neurochem. Res. 2020 45 741 751 10.1007/s11064-019-02947-6 31898085 · DOI
  137. [144]Li F. Wang Y. Yang H. Xu Y. Zhou X. Zhang X. Xie Z. Bi J. The effect of BACE1-AS on β-amyloid generation by regulating BACE1 mRNA expression BMC Mol. Biol. 2019 20 23 10.1186/s12867-019-0140-0 31570097 PMC6771094 · DOI
  138. [145]Li H. Zheng L. Jiang A. Mo Y. Gong Q. Identification of the biological affection of long noncoding RNA BC200 in Alzheimer’s disease NeuroReport 2018 29 1061 1067 10.1097/WNR.0000000000001057 29979260 · DOI
  139. [146]Ahmadi S. Zobeiri M. Bradburn S. Molecular mechanisms underlying actions of certain long noncoding RNAs in Alzheimer’s disease Metab. Brain Dis. 2020 35 681 693 10.1007/s11011-020-00564-9 32185592 · DOI
  140. [148]Holstege H. Van Der Lee S.J. Hulsman M. Wong T.H. Van Rooij J.G. Weiss M.M. Louwersheimer E. Wolters F.J. Amin N. Uitterlinden A.G. Characterization of pathogenic SORL1 genetic variants for association with Alzheimer’s disease: A clinical interpretation strategy Eur. J. Hum. Genet. 2017 25 973 981 10.1038/ejhg.2017.87 28537274 PMC5567154 · DOI
  141. [149]Guo C.-C. Jiao C.-H. Gao Z.-M. Silencing of LncRNA BDNF-AS attenuates Aβ25-35-induced neurotoxicity in PC12 cells by suppressing cell apoptosis and oxidative stress Neurol. Res. 2018 40 795 804 10.1080/01616412.2018.1480921 29902125 · DOI
  142. [150]Bhattacharyya N. Pandey V. Bhattacharyya M. Dey A. Regulatory role of long non coding RNAs (lncRNAs) in neurological disorders: From novel biomarkers to promising therapeutic strategies Asian J. Pharm. Sci. 2021 in press 10.1016/j.ajps.2021.02.006 PMC8609388 34849161 · DOI
  143. [151]Douglas A.G. Non-coding RNA in C9orf72-related amyotrophic lateral sclerosis and frontotemporal dementia: A perfect storm of dysfunction Non-Coding RNA Res. 2018 3 178 187 10.1016/j.ncrna.2018.09.001 30533567 PMC6260478 · DOI
  144. [152]Vieira A. Dogini D. Lopes-Cendes I. Role of non-coding RNAs in non-aging-related neurological disorders Braz. J. Med Biol. Res. 2018 51 10.1590/1414-431x20187566 29898036 PMC6002137 · DOI
  145. [153]Zarei S. Carr K. Reiley L. Diaz K. Guerra O. Altamirano P.F. Pagani W. Lodin D. Orozco G. Chinea A. A comprehensive review of amyotrophic lateral sclerosis Surg. Neurol. Int. 2015 6 171 10.4103/2152-7806.169561 26629397 PMC4653353 · DOI
  146. [154]Masrori P. Van Damme P. Amyotrophic lateral sclerosis: A clinical review Eur. J. Neurol. 2020 27 1918 1929 10.1111/ene.14393 32526057 PMC7540334 · DOI
  147. [155]Nguyen T.M. Kabotyanski E.B. Reineke L.C. Shao J. Xiong F. Lee J.-H. Dubrulle J. Johnson H. Stossi F. Tsoi P.S. The SINEB1 element in the long non-coding RNA Malat1 is necessary for TDP-43 proteostasis Nucleic Acids Res. 2020 48 2621 2642 10.1093/nar/gkz1176 31863590 PMC7049706 · DOI
  148. [156]Wang C. Duan Y. Duan G. Wang Q. Zhang K. Deng X. Qian B. Gu J. Ma Z. Zhang S. Stress Induces Dynamic, Cytotoxicity-Antagonizing TDP-43 Nuclear Bodies via Paraspeckle LncRNA NEAT1-Mediated Liquid-Liquid Phase Separation Mol. Cell 2020 79 443 458.e7 10.1016/j.molcel.2020.06.019 32649883 · DOI
  149. [157]Alberti S. Gladfelter A. Mittag T. Considerations and Challenges in Studying Liquid-Liquid Phase Separation and Biomolecular Condensates Cell 2019 176 419 434 10.1016/j.cell.2018.12.035 30682370 PMC6445271 · DOI · Paper page
  150. [158]Fernandes N. Eshleman N. Buchan J.R. Stress Granules and ALS: A Case of Causation or Correlation? RNA Metabolism in Neurodegenerative Diseases Springer Cham, Switzerland 2018 173 212 10.1007/978-3-319-89689-2_7 29916020 · DOI
  151. [159]Van Treeck B. Protter D.S.W. Matheny T. Khong A. Link C.D. Parker R. RNA self-assembly contributes to stress granule formation and defining the stress granule transcriptome Proc. Natl. Acad. Sci. USA 2018 115 2734 2739 10.1073/pnas.1800038115 29483269 PMC5856561 · DOI
  152. [162]Jain A. Vale A.J.R.D. RNA phase transitions in repeat expansion disorders Nature 2017 546 243 247 10.1038/nature22386 28562589 PMC5555642 · DOI
  153. [163]Česnik A.B. Darovic S. Mihevc S.P. Štalekar M. Malnar M. Motaln H. Lee Y. Mazej J. Pohleven J. Grosch M. Nuclear RNA foci from C9ORF72 expansion mutation form paraspeckle-like bodies J. Cell Sci. 2019 132 jcs224303 10.1242/jcs.224303 30745340 · DOI
  154. [164]Davidson Y.S. Flood L. Robinson A.C. Nihei Y. Mori K. Rollinson S. Richardson A. Benson B.C. Jones M. Snowden J.S. Heterogeneous ribonuclear protein A3 (hnRNP A3) is present in dipeptide repeat protein containing inclusions in Frontotemporal Lobar Degeneration and Motor Neurone disease associated with expansions in C9orf72 gene Acta Neuropathol. Commun. 2017 5 31 10.1186/s40478-017-0437-5 28431575 PMC5399321 · DOI
  155. [165]Piccolo L.L. Yamaguchi M. RNAi of arcRNA hsrω affects sub-cellular localization of Drosophila FUS to drive neurodiseases Exp. Neurol. 2017 292 125 134 10.1016/j.expneurol.2017.03.011 28342748 · DOI
  156. [166]Muraoka Y. Nakamura A. Tanaka R. Suda K. Azuma Y. Kushimura Y. Piccolo L.L. Yoshida H. Mizuta I. Tokuda T. Genetic screening of the genes interacting with Drosophila FIG4 identified a novel link between CMT-causing gene and long noncoding RNAs Exp. Neurol. 2018 310 1 13 10.1016/j.expneurol.2018.08.009 30165075 · DOI
  157. [167]Ng S.Y. Lin L. Soh B.S. Stanton L.W. Long noncoding RNAs in development and disease of the central nervous system Trends Genet. 2013 29 461 468 10.1016/j.tig.2013.03.002 23562612 · DOI
  158. [168]Shi C. Zhang L. Qin C. Long non-coding RNAs in brain development, synaptic biology, and Alzheimer’s disease Brain Res. Bull. 2017 132 160 169 10.1016/j.brainresbull.2017.03.010 28347717 · DOI
  159. [169]Lipovich L. Tarca A.L. Cai J. Jia H. Chugani H.T. Sterner K.N. Grossman L.I. Uddin M. Hof P.R. Sherwood C.C. Developmental Changes in the Transcriptome of Human Cerebral Cortex Tissue: Long Noncoding RNA Transcripts Cereb. Cortex 2013 24 1451 1459 10.1093/cercor/bhs414 23377288 · DOI
  160. [170]Wilkinson B. Campbell D.B. Contribution of Long Noncoding RNAs to Autism Spectrum Disorder Risk Int. Rev. Neurobiol. 2013 113 35 59 10.1016/b978-0-12-418700-9.00002-2 24290382 · DOI
  161. [171]Tang J. Yu Y. Yang W. Long noncoding RNA and its contribution to autism spectrum disorders CNS Neurosci. Ther. 2017 23 645 656 10.1111/cns.12710 28635106 PMC6492731 · DOI
  162. [172]Takahashi S. Ohtsuki T. Yu S.-Y. Tanabe E.-I. Yara K. Kamioka M. Matsushima E. Matsuura M. Ishikawa K. Minowa Y. Significant linkage to chromosome 22q for exploratory eye movement dysfunction in schizophrenia Am. J. Med. Genet. B Neuropsychiatr. Genet. 2003 123B 27 32 10.1002/ajmg.b.10046 14582142 · DOI
  163. [173]Rapicavoli N.A. Poth E.M. Blackshaw S. The long noncoding RNA RNCR2 directs mouse retinal cell specification BMC Dev. Biol. 2010 10 49 10.1186/1471-213X-10-49 20459797 PMC2876091 · DOI
  164. [174]Ip J.Y. Sone M. Nashiki C. Pan Q. Kitaichi K. Yanaka K. Abe T. Takao K. Miyakawa T. Blencowe B.J. Gomafu lncRNA knockout mice exhibit mild hyperactivity with enhanced responsiveness to the psychostimulant methamphetamine Sci. Rep. 2016 6 27204 10.1038/srep27204 27251103 PMC4890022 · DOI
  165. [175]Bernard D. Prasanth K.V. Tripathi V. Colasse S. Nakamura T. Xuan Z. Zhang M.Q. Sedel F. Jourdren L. Coulpier F. A long nuclear-retained non-coding RNA regulates synaptogenesis by modulating gene expression EMBO J. 2010 29 3082 3093 10.1038/emboj.2010.199 20729808 PMC2944070 · DOI
  166. [176]Madabhushi R. Gao F. Pfenning A.R. Pan L. Yamakawa S. Seo J. Rueda R. Phan T.X. Yamakawa H. Pao P.-C. Activity-Induced DNA Breaks Govern the Expression of Neuronal Early-Response Genes Cell 2015 161 1592 1605 10.1016/j.cell.2015.05.032 26052046 PMC4886855 · DOI · Paper page
  167. [177]Millar J.K. James R. Brandon N. A Thomson P. DISC1 and DISC2: Discovering and dissecting molecular mechanisms underlying psychiatric illness Ann. Med. 2004 36 367 378 10.1080/07853890410033603 15478311 · DOI
  168. [178]Chubb J.E. Bradshaw N.J. Soares D.C. Porteous D. Millar J.K. The DISC locus in psychiatric illness Mol. Psychiatry 2007 13 36 64 10.1038/sj.mp.4002106 17912248 · DOI · Paper page
  169. [179]Polesskaya O.O. Haroutunian V. Davis K.L. Hernandez I. Sokolov B.P. Novel putative nonprotein-coding RNA gene from 11q14 displays decreased expression in brains of patients with schizophrenia J. Neurosci. Res. 2003 74 111 122 10.1002/jnr.10752 13130513 · DOI
  170. [180]Walsh T. McClellan J.M. McCarthy S.E. Addington A.M. Pierce S.B. Cooper G.M. Nord A.S. Kusenda M. Malhotra D. Bhandari A. Rare Structural Variants Disrupt Multiple Genes in Neurodevelopmental Pathways in Schizophrenia Science 2008 320 539 543 10.1126/science.1155174 18369103 · DOI · Paper page
  171. [181]Nakagawa S. Naganuma T. Shioi G. Hirose T. Paraspeckles are subpopulation-specific nuclear bodies that are not essential in mice J. Cell Biol. 2011 193 31 39 10.1083/jcb.201011110 21444682 PMC3082198 · DOI
  172. [182]Hirose T. Virnicchi G. Tanigawa A. Naganuma T. Li R. Kimura H. Yokoi T. Nakagawa S. Bénard M. Fox A.H. NEAT1 long noncoding RNA regulates transcription via protein sequestration within subnuclear bodies Mol. Biol. Cell 2014 25 169 183 10.1091/mbc.e13-09-0558 24173718 PMC3873887 · DOI
  173. [183]Wang Y. Zhao X. Ju W. Flory M. Zhong J. Jiang S. Wang P. Dong X. Tao X. Chen Q. Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder Transl. Psychiatry 2015 5 e660 10.1038/tp.2015.144 26485544 PMC4930123 · DOI
  174. [184]Noor A. Whibley A. Marshall C.R. Gianakopoulos P.J. Piton A. Carson A.R. Orlic-Milacic M. Lionel A.C. Sato D. Pinto D. Disruption at the PTCHD1 Locus on Xp22.11 in Autism Spectrum Disorder and Intellectual Disability Sci. Transl. Med. 2010 2 49ra68 10.1126/scitranslmed.3001267 PMC2987731 20844286 · DOI · Paper page
  175. [186]Meng L. Person R.E. Huang W. Zhu P.J. Costa-Mattioli M. Beaudet A.L. Truncation of Ube3a-ATS Unsilences Paternal Ube3a and Ameliorates Behavioral Defects in the Angelman Syndrome Mouse Model PLoS Genet. 2013 9 e1004039 10.1371/journal.pgen.1004039 24385930 PMC3873245 · DOI
  176. [187]Meng L. Ward A.J. Chun S. Bennett C.F. Beaudet A.L. Rigo F. Towards a therapy for Angelman syndrome by targeting a long non-coding RNA Nature 2015 518 409 412 10.1038/nature13975 25470045 PMC4351819 · DOI
  177. [188]Hosseini E. Bagheri-Hosseinabadi Z. De Toma I. Jafarisani M. Sadeghi I. The importance of long non-coding RNAs in neuropsychiatric disorders Mol. Asp. Med. 2019 70 127 140 10.1016/j.mam.2019.07.004 31319085 · DOI
  178. [189]Wang Y. Fang Y. Zhang F. Xu M. Zhang J. Yan J. Ju W. Brown W.T. Zhong N. Hypermethylation of the enolase gene (ENO2) in autism Eur. J. Pediatr. 2014 173 1233 1244 10.1007/s00431-014-2311-9 24737292 PMC4134484 · DOI
  179. [190]Wegiel J. Kuchna I. Nowicki K. Imaki H. Wegiel J. Marchi E. Ma S.Y. Chauhan A. Chauhan V. Bobrowicz T.W. The neuropathology of autism: Defects of neurogenesis and neuronal migration, and dysplastic changes Acta Neuropathol. 2010 119 755 770 10.1007/s00401-010-0655-4 20198484 PMC2869041 · DOI · Paper page
  180. [191]Lin M. Pedrosa E. Shah A. Hrabovsky A. Maqbool S. Zheng D. Lachman H.M. RNA-Seq of Human Neurons Derived from iPS Cells Reveals Candidate Long Non-Coding RNAs Involved in Neurogenesis and Neuropsychiatric Disorders PLoS ONE 2011 6 e23356 10.1371/journal.pone.0023356 21915259 PMC3168439 · DOI
  181. [192]Rusconi F. Battaglioli E. Venturin M. Psychiatric Disorders and lncRNAs: A Synaptic Match Int. J. Mol. Sci. 2020 21 3030 10.3390/ijms21093030 32344798 PMC7246907 · DOI
  182. [193]Smith S.E.P. Zhou Y.-D. Zhang G. Jin Z. Stoppel D.C. Anderson M.P. Increased Gene Dosage of Ube3a Results in Autism Traits and Decreased Glutamate Synaptic Transmission in Mice Sci. Transl. Med. 2011 3 103ra97 10.1126/scitranslmed.3002627 PMC3356696 21974935 · DOI · Paper page
  183. [194]Vatsa N. Jana N.R. UBE3A and Its Link with Autism Front. Mol. Neurosci. 2018 11 448 10.3389/fnmol.2018.00448 30568575 PMC6290346 · DOI
  184. [195]Khatri N. Man H.Y. The Autism and Angelman Syndrome Protein Ube3A/E6AP: The Gene, E3 Ligase Ubiquitination Targets and Neurobiological Functions Front. Mol. Neurosci. 2019 12 109 10.3389/fnmol.2019.00109 31114479 PMC6502993 · DOI
  185. [196]Velmeshev D. Magistri M. Faghihi M. Expression of non-protein-coding antisense RNAs in genomic regions related to autism spectrum disorders Mol. Autism 2013 4 32 10.1186/2040-2392-4-32 24007600 PMC3851999 · DOI
  186. [197]Kerin T. Ramanathan A. Rivas K. Grepo N. Coetzee G.A. Campbell D.B. A Noncoding RNA Antisense to Moesin at 5p14.1 in Autism Sci. Transl. Med. 2012 4 128ra40 10.1126/scitranslmed.3003479 22491950 · DOI
  187. [198]DeWitt J.J. Grepo N. Wilkinson B. Evgrafov O.V. Knowles J.A. Campbell D.B. Impact of the Autism-Associated Long Noncoding RNA MSNP1AS on Neuronal Architecture and Gene Expression in Human Neural Progenitor Cells Genes 2016 7 76 10.3390/genes7100076 PMC5083915 27690106 · DOI
  188. [199]Luo T. Ou J.N. Cao L.F. Peng X.Q. Li Y.M. Tian Y.Q. The Autism-Related lncRNA MSNP1AS Regulates Moesin Protein to Influence the RhoA, Rac1, and PI3K/Akt Pathways and Regulate the Structure and Survival of Neurons Autism Res. 2020 13 2073 2082 10.1002/aur.2413 33215882 · DOI
  189. [200]Luo T. Liu P. Wang X.Y. Li L.Z. Zhao L.P. Huang J. Li Y.M. Ou J.L. Peng X.Q. Effect of the autism-associated lncRNA Shank2-AS on architecture and growth of neurons J. Cell. Biochem. 2018 120 1754 1762 10.1002/jcb.27471 30160788 · DOI
  190. [201]Zaslavsky K. Zhang W.B. McCready F.P. Rodrigues D.C. Deneault E. Loo C. Zhao M. Ross P.J. Hajjar J.E. Romm A. SHANK2 mutations associated with autism spectrum disorder cause hyperconnectivity of human neurons Nat. Neurosci. 2019 22 556 564 10.1038/s41593-019-0365-8 30911184 PMC6475597 · DOI · Paper page
  191. [202]Ghafouri-Fard S. Namvar A. Arsang-Jang S. Komaki A. Taheri M. Expression Analysis of BDNF, BACE1, and Their Natural Occurring Antisenses in Autistic Patients J. Mol. Neurosci. 2020 70 194 200 10.1007/s12031-019-01432-7 31760580 · DOI
  192. [203]Khavari B. Cairns M.J. Epigenomic Dysregulation in Schizophrenia: In Search of Disease Etiology and Biomarkers Cells 2020 9 1837 10.3390/cells9081837 32764320 PMC7463953 · DOI
  193. [204]Wang Y. Wang X. Ma Y. Wang Y.X. Di Y. Expression profiles of long noncoding RNAs in retinopathy of prematurity Neural Regen. Res. 2020 15 1962 1968 10.4103/1673-5374.280328 32246647 PMC7513972 · DOI
  194. [206]Safa A. Badrlou E. Arsang-Jang S. Sayad A. Taheri M. Ghafouri-Fard S. Expression of NF-κB associated lncRNAs in schizophrenia Sci. Rep. 2020 10 18105 10.1038/s41598-020-75333-w 33093650 PMC7581809 · DOI

Cited by

Sorted by citations

Authors
Aliperti, V., Skonieczna, J., & Cerase, A.
Affiliations
  • University of Naples Federico II (IT)
  • Queen Mary University of London (GB)
Corresponding author
  • Aliperti, Vincenza
  • Cerase, Andrea
Venue
Non-Coding RNA
Publisher
MDPI AG
Published
2021-06-17
Volume
7
Issue
2
Pages
36
ISSN
2311-553X (ISSN-L)
OpenAlex
W3174055566
Cited by
137
References
12
Citations by year
2026: 20 · 2025: 30 · 2024: 33 · 2023: 27 · 2022: 25 · 2021: 2
FWCI
2.62
Type
journal article
Language
en
Open access
Locations
  • Non-Coding RNA (publishedVersion, cc-by)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • CINECA IRIS Institutial research information system (University of Pisa) (submittedVersion, cc-by)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
  • Queen Mary Research Online (Queen Mary University of London) (submittedVersion, cc-by)
Funders
Barts Charity
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › Cancer-related molecular mechanisms research
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetics and Neurodevelopmental Disorders
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA Research and Splicing
Keywords
long non-coding RNA, brain development, neurological disorders, neurodegenerative diseases, mental illness, gene expression regulation, epigenetic regulation, neuronal development

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review