Long noncoding RNAs: past, present, and future

An integrated encyclopedia of DNA elements in the human genome

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

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A ceRNA Hypothesis: The Rosetta Stone of a Hidden RNA Language?

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Genetic regulatory mechanisms in the synthesis of proteins

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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

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Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis

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Landscape of transcription in human cells

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Functional Demarcation of Active and Silent Chromatin Domains in Human HOX Loci by Noncoding RNAs

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Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

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Gene Action in the X-chromosome of the Mouse (Mus musculus L.)

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Establishing, maintaining and modifying DNA methylation patterns in plants and animals

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The Transcriptional Landscape of the Mammalian Genome

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Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclassesPreprint

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Long Noncoding RNA as Modular Scaffold of Histone Modification Complexes

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Biogenesis of small RNAs in animals

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Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

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A Long Noncoding RNA Controls Muscle Differentiation by Functioning as a Competing Endogenous RNA

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Widespread transcription at neuronal activity-regulated enhancers

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A coding-independent function of gene and pseudogene mRNAs regulates tumour biology

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The Nuclear-Retained Noncoding RNA MALAT1 Regulates Alternative Splicing by Modulating SR Splicing Factor Phosphorylation

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MALAT-1, a novel noncoding RNA, and thymosin β4 predict metastasis and survival in early-stage non-small cell lung cancer

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Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes

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Selfish DNA: the ultimate parasite

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Target mimicry provides a new mechanism for regulation of microRNA activity

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A Large Intergenic Noncoding RNA Induced by p53 Mediates Global Gene Repression in the p53 Response

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Gene Regulation for Higher Cells: A Theory

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Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters

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A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression

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lincRNAs act in the circuitry controlling pluripotency and differentiation

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The hallmarks of cancer

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Long Noncoding RNAs with Enhancer-like Function in Human Cells

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Antisense Transcription in the Mammalian Transcriptome

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Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs

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Polycomb Proteins Targeted by a Short Repeat RNA to the Mouse X Chromosome

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An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles

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Spliced segments at the 5′ terminus of adenovirus 2 late mRNA

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Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of β-secretase

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Molecular Interplay of the Noncoding RNA ANRIL and Methylated Histone H3 Lysine 27 by Polycomb CBX7 in Transcriptional Silencing of INK4a

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HITS-CLIP yields genome-wide insights into brain alternative RNA processing

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PIWI-interacting small RNAs: the vanguard of genome defence

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The human XIST gene: Analysis of a 17 kb inactive X-specific RNA that contains conserved repeats and is highly localized within the nucleus

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Polycomb silencers control cell fate, development and cancer

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A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome

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Genomic Maps of Long Noncoding RNA Occupancy Reveal Principles of RNA-Chromatin Interactions

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lncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3′ UTRs via Alu elements

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Long Noncoding RNA HOTAIR Regulates Polycomb-Dependent Chromatin Modification and Is Associated with Poor Prognosis in Colorectal Cancers

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An amazing sequence arrangement at the 5′ ends of adenovirus 2 messenger RNA

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Noncoding RNA Gas5 Is a Growth Arrest– and Starvation-Associated Repressor of the Glucocorticoid Receptor

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Vernalization-Mediated Epigenetic Silencing by a Long Intronic Noncoding RNA

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Principles for modulation of the nuclear receptor superfamily

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Parental imprinting of the mouse H19 gene

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Kcnq1ot1 Antisense Noncoding RNA Mediates Lineage-Specific Transcriptional Silencing through Chromatin-Level Regulation

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Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters

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Conserved Function of lincRNAs in Vertebrate Embryonic Development despite Rapid Sequence Evolution

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Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes

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Repetitive Elements May Comprise Over Two-Thirds of the Human Genome

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The Product of the H19 Gene May Function as an RNA

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AU-rich elements and associated factors: are there unifying principles?

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The product of the mouse Xist gene is a 15 kb inactive X-specific transcript containing no conserved ORF and located in the nucleus

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Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression

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Global Identification of Human Transcribed Sequences with Genome Tiling Arrays

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Long non-coding RNA ANRIL is required for the PRC2 recruitment to and silencing of p15INK4B tumor suppressor gene

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CREB up-regulates long non-coding RNA, HULC expression through interaction with microRNA-372 in liver cancer

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Induced ncRNAs allosterically modify RNA-binding proteins in cis to inhibit transcription

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Genome-wide Identification of Polycomb-Associated RNAs by RIP-seq

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LincRNA-p21 Suppresses Target mRNA Translation

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Complete sequencing and characterization of 21,243 full-length human cDNAs

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Divergent transcription from active promoters

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The Air Noncoding RNA Epigenetically Silences Transcription by Targeting G9a to Chromatin

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Modulating Hox gene functions during animal body patterning

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Polycomb silencing mechanisms and the management of genomic programmes

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Histones: annotating chromatin

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Tsix, a gene antisense to Xist at the X-inactivation centre

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Small RNAs in transcriptional gene silencing and genome defence

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Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA

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Epigenetic Dynamics of Imprinted X Inactivation During Early Mouse Development

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The H19 lincRNA is a developmental reservoir of miR-675 that suppresses growth and Igf1r

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XIST RNA paints the inactive X chromosome at interphase: evidence for a novel RNA involved in nuclear/chromosome structure.

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A Steroid Receptor Coactivator, SRA, Functions as an RNA and Is Present in an SRC-1 Complex

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HOTAIR is a negative prognostic factor and exhibits pro-oncogenic activity in pancreatic cancer

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RNA Exosome Depletion Reveals Transcription Upstream of Active Human Promoters

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Genome-wide measurement of RNA secondary structure in yeast

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The evolutionary origin of orphan genes

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A long nuclear‐retained non‐coding RNA regulates synaptogenesis by modulating gene expression

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Regulatory roles of natural antisense transcripts

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