Guidelines for the use and interpretation of assays for monitoring autophagy

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Items 601–800 of 896

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16. Autophagy in organelle homeostasis: Peroxisome turnover
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17. Investigating autophagy: Quantitative morphometric analysis using electron microscopy
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18. A Peroxisomal Lon Protease and Peroxisome Degradation by Autophagy Play Key Roles in Vitality of<i>Hansenula polymorpha</i>Cells
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19. Ovarian follicular atresia is mediated by heterophagy, autophagy, and apoptosis in Prochilodus argenteus and Leporinus taeniatus (Teleostei: Characiformes)
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20. Biochemical Isolation and Characterization of the Tubulovesicular LC3-positive Autophagosomal Compartment
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21. Relieving Autophagy and 4EBP1 from Rapamycin Resistance
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22. Autophagy-related lipase FgATG15 of Fusarium graminearum is important for lipid turnover and plant infection
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23. Induction of autophagy with catalytic mTOR inhibitors reduces huntingtin aggregates in a neuronal cell model
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24. Prognostic significance of Beclin 1-dependent apoptotic activity in hepatocellular carcinoma
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25. The autophagosomal protein LGG-2 acts synergistically with LGG-1 in dauer formation and longevity in C. elegans
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26. Chapter 5 Autophagic Clearance of Aggregate‐Prone Proteins Associated with Neurodegeneration
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27. Identification of Small Molecule Inhibitors of Phosphatidylinositol 3-Kinase and Autophagy
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28. Increased Activity and Altered Subcellular Distribution of Lysosomal Enzymes Determine Neuronal Vulnerability in Niemann-Pick Type C1-Deficient Mice
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29. Autophagosomes can support Yersinia pseudotuberculosis replication in macrophages
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30. Aup1-mediated regulation of Rtg3 during mitophagy
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31. Autophagy is an important event for megakaryocytic differentiation of the chronic myelogenous leukemia K562 cell line
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32. Silencing of the hydra serine protease inhibitorKazal1gene mimics the humanSPINK1pancreatic phenotype
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33. Intracellular survival of Shigella
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34. Ubc8p functions in catabolite degradation of fructose‐1,6‐bisphosphatase in yeast
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35. Inhibition of hepatocytic autophagy by okadaic acid and other protein phosphatase inhibitors
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36. Electron tomography reveals the endoplasmic reticulum as a membrane source for autophagosome formation
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37. Inhibition of autophagic-lysosomal delivery and autophagic lactolysis by asparagine.
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39. Leucine metabolism in aging humans: effect of insulin and substrate availability
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40. Gtdap-1 promotes autophagy and is required for planarian remodeling during regeneration and starvation
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41. Zebrafish MTMR14 is required for excitation–contraction coupling, developmental motor function and the regulation of autophagy
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42. Phagocytosis of apoptotic cells by liver: A morphological study
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43. Ca2+/Calmodulin-Dependent Kinase (CaMK) Signaling via CaMKI and AMP-Activated Protein Kinase Contributes to the Regulation of WIPI-1 at the Onset of Autophagy
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44. Autophagosome Formation during Varicella-Zoster Virus Infection following Endoplasmic Reticulum Stress and the Unfolded Protein Response
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45. GABARAPL1 (GEC1): Original or copycat?
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46. Ligands of the antiestrogen-binding site induce active cell death and autophagy in human breast cancer cells through the modulation of cholesterol metabolism
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47. A comprehensive siRNA screen for kinases that suppress macroautophagy in optimal growth conditions
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48. Light-Chain 3A Autophagic Activity and Prognostic Significance in Non-small Cell Lung Carcinomas
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49. Regulation of translation is required for dendritic cell function and survival during activation
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50. At the core of survival: Autophagy delays the onset of both apoptotic and necrotic cell death in a model of ischemic cell injury
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51. Autophagy-dependent senescence in response to DNA damage and chronic apoptotic stress
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52. Generation of a large scale repertoire of Expressed Sequence Tags (ESTs) from normalised rainbow trout cDNA libraries
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53. Vid24p, a Novel Protein Localized to the Fructose-1,6-bisphosphatase–containing Vesicles, Regulates Targeting of Fructose-1,6-bisphosphatase from the Vesicles to the Vacuole for Degradation
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54. An in vivo and in vitro assessment of autophagy-related gene expression in muscle of rainbow trout (Oncorhynchus mykiss)
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55. Autophagy in Hydra: A response to starvation and stress in early animal evolution
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56. Identification of a novel serine/threonine kinase ULK3 as a positive regulator of Hedgehog pathway
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57. The Metabolic Consequences of Hepatic AMP-Kinase Phosphorylation in Rainbow Trout
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58. Binding preference of p62 towards LC3-ll during dopaminergic neurotoxin-induced impairment of autophagic flux
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59. A quantitative assay for the monitoring of autophagosome accumulation in different phases of the cell cycle
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60. Chapter 4 Assaying of Autophagic Protein Degradation
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61. Autophagy in Immune Defense Against Mycobacterium tuberculosis
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62. Involvement of Integrins and Src in Insulin Signaling toward Autophagic Proteolysis in Rat Liver
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63. Photoconversion of Lysotracker Red to a green fluorescent molecule
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64. Target of rapamycin (TOR) signaling controls epithelial morphogenesis in the vertebrate intestine
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65. Autophagy-active beclin-1 correlates with favourable clinical outcome in non-Hodgkin lymphomas
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66. Induction of Autophagy by Second-Fermentation Yeasts during Elaboration of Sparkling Wines
    Eduardo Cebollero, Ramon Gonzalez · 2006 · Applied and Environmental Microbiology
67. A hierarchical whole body modeling approach elucidates the link between in vitro insulin signaling and in vivo glucose homeostasis
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68. The autophagy genes atg8 and atg1 affect morphogenesis and pathogenicity in Ustilago maydis
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69. Cell death: A dynamic response concept
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70. High Beclin 1 expression defines a poor prognosis in endometrial adenocarcinomas
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71. Atorvastatin induces autophagy in prostate cancer PC3 cells through activation ofLC3transcription
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72. Age-related changes in the function of autophagy in rat kidneys
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73. AMPK- and p62/SQSTM1-dependent autophagy mediate Resveratrol-induced cell death in chronic myelogenous leukemia
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74. Autophagy modulates the Mycobacterium tuberculosis-induced cytokine response
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75. Blockade of Fatty Acid Synthase Induces Ubiquitination and Degradation of Phosphoinositide-3-Kinase Signaling Proteins in Ovarian Cancer
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76. Inhibition of PI3k Class III–Dependent Autophagy Prevents Apoptosis and Necrosis by Oxidative Stress in Dopaminergic Neuroblastoma Cells
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77. Alternative Programs of Cell Death in Developing Retinal Tissue
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78. Unc-51 Controls Active Zone Density and Protein Composition by Downregulating ERK Signaling
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79. Beclin-1 and LC3A expression in cutaneous malignant melanomas: a biphasic survival pattern for beclin-1
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80. Autophagic degradation of peroxisomes in isolated rat hepatocytes
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81. Hydra, a niche for cell and developmental plasticity
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82. A yeast MAPK cascade regulates pexophagy but not other autophagy pathways
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83. HAMLET (human α‐lactalbumin made lethal to tumor cells) triggers autophagic tumor cell death
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84. The plant alkaloid voacamine induces apoptosis-independent autophagic cell death on both sensitive and multidrug resistant human osteosarcoma cells
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85. Early Secretory Pathway GeneTRS85is Required for Selective Macroautophagy of Peroxisomes inYarrowia lipolytica
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86. Inhibition of active autophagy induces apoptosis and increases chemosensitivity in cholangiocarcinoma
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87. Methodological considerations for assessing autophagy modulators: A study with calcium phosphate precipitates
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88. Multiphasic control of proteolysis by leucine and alanine in the isolated rat hepatocyte
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89. Sequestration Revisited: Integrating Traditional Electron Microscopy, De Novo Assembly and New Results
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90. Chapter 17 Correlative Light and Electron Microscopy
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91. The Relationship Between Lumenal and Limiting Membranes in Swollen Late Endocytic Compartments Formed After Wortmannin Treatment or Sucrose Accumulation
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92. Alpha Tonoplast Intrinsic Protein is Specifically Associated with Vacuole Membrane Involved in an Autophagic Process
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93. A Role for Intercellular Antigen Transfer in the Recognition of EBV-Transformed B Cell Lines by EBV Nuclear Antigen-Specific CD4+ T Cells
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94. Quantification of nonselective bulk autophagy in<i>S. cerevisiae</i>using Pgk1-GFP
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95. Autophagy as the main means of cytotoxicity by glucocorticoids in hematological malignancies
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96. Formation of autophagosomes during degradation of excess peroxisomes induced by administration of dioctyl phthalate.
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97. Stimulation of hepatocytic AMP-activated protein kinase by okadaic acid and other autophagy-suppressive toxins
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98. Differential effects of the glycolysis inhibitor 2‐deoxy‐ D ‐glucose on the activity of pro‐apoptotic agents in metastatic melanoma cells, and induction of a cytoprotective autophagic response
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99. Atg8 regulates vacuolar membrane dynamics in a lipidation-independent manner in <i>Pichia pastoris</i>
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100. Chelation of Lysosomal Iron Protects Dopaminergic SH-SY5Y Neuroblastoma Cells from Hydrogen Peroxide Toxicity by Precluding Autophagy and Akt Dephosphorylation
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101. Autophagy dysfunction and ubiquitin-positive protein aggregates in Dictyostelium cells lacking Vmp1
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102. A high-throughput FRET-based assay for determination of Atg4 activity
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103. Downregulation of VRK1 by p53 in Response to DNA Damage Is Mediated by the Autophagic Pathway
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104. Degradation of microbodies in relation of activities of alcohol oxidase and catalase inCandida boidinii
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105. Density functional computational studies on (E)-2-[(2-Hydroxy-5-nitrophenyl)-iminiomethyl]-4-nitrophenolate
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106. Autophagic Activity and Aging in Human Odontoblasts
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107. Systematic cloning and analysis of autophagy-related genes from the silkworm Bombyx mori
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108. Acetylcholine-induced intracellular acidosis in rabbit salivary gland acinar cells
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109. Autophagy-independent function of MAP-LC3 during intracellular propagation of<i>Chlamydia trachomatis</i>
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110. Reactive Oxygen Species Regulate Autophagy through Redox-Sensitive Proteases
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111. Cell hydration controls autophagosome formation in rat liver in a microtubule-dependent way downstream from p38MAPK activation
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112. Lanatoside C sensitizes glioblastoma cells to tumor necrosis factor–related apoptosis-inducing ligand and induces an alternative cell death pathway
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113. Synthetic substrates for measuring activity of autophagy proteases-autophagins (Atg4)
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114. Inhibition of hepatocytic protein degradation by methylaminopurines and inhibitors of protein synthesis
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115. Freeze-fracture replica immunolabelling reveals human WIPI-1 and WIPI-2 as membrane proteins of autophagosomes
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116. Importance of cholesterol and oxysterols metabolism in the pharmacology of tamoxifen and other AEBS ligands
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117. Detection of Autophagy in Tissue by Standard Immunohistochemistry: Possibilities and Limitations
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118. Autophagy in endometrial carcinomas and prognostic relevance of 'stone-like' structures (SLS): What is destined for the atypical endometrial hyperplasia?
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119. Autophagic cell death: Analysis in Dictyostelium
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120. Mechanisms and consequences of bacterial targeting by the autophagy pathway
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121. Monitoring Mitophagy in Neuronal Cell Cultures
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122. Non-Autophagic GFP-LC3 Puncta Induced by Saponin and Other Detergents
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179. Reticulocyte mitophagy: Monitoring mitochondrial clearance in a mammalian model
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180. The Vacuolar Import and Degradation Pathway Merges with the Endocytic Pathway to Deliver Fructose-1,6-bisphosphatase to the Vacuole for Degradation
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186. Isolation of Lysosomes from Tissues and Cells by Differential and Density Gradient Centrifugation
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189. LC3-dependent Intracellular Membrane Tubules Induced by γ-Protocadherins A3 and B2
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195. Intramembrane particles and filipin labelling on the membranes of autophagic vacuoles and lysosomes in mouse liver
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