Guidelines for the use and interpretation of assays for monitoring autophagy

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Items 401–600 of 896

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21. Peroxisome degradation in Saccharomyces cerevisiae is dependent on machinery of macroautophagy and the Cvt pathway
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22. Phosphatidylserine in Addition to Phosphatidylethanolamine Is an in Vitro Target of the Mammalian Atg8 Modifiers, LC3, GABARAP, and GATE-16
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29. To be or not to be? Examples of incorrect identification of autophagic compartments in conventional transmission electron microscopy of mammalian cells
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30. Autophagy in Health and Disease
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31. ALIS are Stress-Induced Protein Storage Compartments for Substrates of the Proteasome and Autophagy
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32. Crystal Structure of Venus, a Yellow Fluorescent Protein with Improved Maturation and Reduced Environmental Sensitivity
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34. Autophagy and p62 in Cardiac Proteinopathy
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36. Import of a Cytosolic Protein into Lysosomes by Chaperone-mediated Autophagy Depends on Its Folding State
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37. Dynamics of the yeast transcriptome during wine fermentation reveals a novel fermentation stress response
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38. Role of Unc51.1 and its binding partners in CNS axon outgrowth
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39. Two MAPK-signaling pathways are required for mitophagy in <i>Saccharomyces cerevisiae</i>
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40. AtATG Genes, Homologs of Yeast Autophagy Genes, are Involved in Constitutive Autophagy in Arabidopsis Root Tip Cells
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41. Autophagy in filamentous fungi
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42. ELECTRON MICROSCOPIC EXAMINATION OF SUBCELLULAR FRACTIONS
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43. Quantitative correlation between proteolysis and macro- and microautophagy in mouse hepatocytes during starvation and refeeding.
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44. Calpain-mediated cleavage of Beclin-1 and autophagy deregulation following retinal ischemic injury in vivo
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45. The induction of autophagy by mechanical stress
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46. Inflammasome-Independent Modulation of Cytokine Response by Autophagy in Human Cells
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47. A comprehensive glossary of autophagy-related molecules and processes
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48. Ordered Organelle Degradation during Starvation-induced Autophagy
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49. Assaying autophagic activity in transgenic GFP-Lc3 and GFP-Gabarap zebrafish embryos
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50. Peroxisome Dynamics in Cultured Mammalian Cells
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51. Effector caspase Dcp-1 and IAP protein Bruce regulate starvation-induced autophagy during <i>Drosophila melanogaster</i> oogenesis
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52. Autophagy is required for necrotic cell death in Caenorhabditis elegans
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53. MCL‐1 is a stress sensor that regulates autophagy in a developmentally regulated manner
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54. Dependence of hepatocytic autophagy on intracellularly sequestered calcium.
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55. Targeted Activation of Innate Immunity for Therapeutic Induction of Autophagy and Apoptosis in Melanoma Cells
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56. The Burkholderia pseudomallei Type III Secretion System and BopA Are Required for Evasion of LC3-Associated Phagocytosis
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57. The LC3 recruitment mechanism is separate from Atg9L1-dependent membrane formation in the autophagic response against<i>Salmonella</i>
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58. ULK1 inhibits the kinase activity of mTORC1 and cell proliferation
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59. Protective role of autophagy against <i>Vibrio cholerae</i> cytolysin, a pore-forming toxin from <i>V. cholerae</i>
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60. Autophagy precedes apoptosis during the remodeling of silkworm larval midgut
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61. Atg5 and Ambra1 differentially modulate neurogenesis in neural stem cells
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62. Visualization of the Peroxisomal Compartment in Living Mammalian Cells: Dynamic Behavior and Association with Microtubules
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63. Autophagy in protists
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64. Autophagy in Drosophila ovaries is induced by starvation and is required for oogenesis
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65. Human WIPI‐1 puncta‐formation: A novel assay to assess mammalian autophagy
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66. Cysteine peptidases CPA and CPB are vital for autophagy and differentiation in Leishmania mexicana
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67. Utilizing flow cytometry to monitor autophagy in living mammalian cells
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68. Accumulation of autophagosomes after inhibition of hepatocytic protein degradation by vinblastine, leupeptin or a lysosomotropic amine
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69. Atg1‐mediated myosin II activation regulates autophagosome formation during starvation‐induced autophagy
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70. Purification and characterization of autophagosomes from rat hepatocytes
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71. Anti-cancer agent siramesine is a lysosomotropic detergent that induces cytoprotective autophagosome accumulation
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72. Ins(1,4,5) <i> <i>P</i> </i> ₃ receptor-mediated Ca ²⁺ signaling and autophagy induction are interrelated
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73. Beclin 1 over- and underexpression in colorectal cancer: distinct patterns relate to prognosis and tumour hypoxia
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74. Catabolite Degradation of Fructose-1,6-bisphosphatase in the YeastSaccharomyces cerevisiae: A Genome-wide Screen Identifies Eight NovelGIDGenes and Indicates the Existence of Two Degradation Pathways
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75. Evidence for the interplay between JNK and p53-DRAM signaling pathways in the regulation of autophagy
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76. Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches
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77. Diet, Autophagy, and Cancer: A Review
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78. A novel method for autophagy detection in primary cells: Impaired levels of macroautophagy in immunosenescent T cells
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79. Molecular Mechanisms and Regulation of Specific and Nonspecific Autophagy Pathways in Yeast*
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80. Profound Cardioprotection With Chloramphenicol Succinate in the Swine Model of Myocardial Ischemia-Reperfusion Injury
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81. The Actin Cytoskeleton Is Required for Selective Types of Autophagy, but Not Nonspecific Autophagy, in the Yeast<i>Saccharomyces cerevisiae</i>
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82. Proteomic Analysis of Membrane-Associated Proteins from Rat Liver Autophagosomes
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83. AMPK-independent induction of autophagy by cytosolic Ca2+ increase
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84. Effects of Small Molecules on Chaperone-Mediated Autophagy
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85. A reporter cell system to monitor autophagy based on p62/SQSTM1
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86. Analysis of the Role of Autophagy in Replication of Herpes Simplex Virus in Cell Culture
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87. Autophagy Driven by a Master Regulator of Hematopoiesis
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88. Interaction of ICP34.5 with Beclin 1 Modulates Herpes Simplex Virus Type 1 Pathogenesis through Control of CD4+ T-Cell Responses
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89. Regulation of microautophagy and basal protein turnover in rat liver. Effects of short-term starvation.
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90. Characterization of macroautophagic flux in vivo using a leupeptin-based assay
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91. Autophagy in health and disease. 3. Involvement of autophagy in muscle atrophy
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92. Chapter 3 The Quantitative Pho8Δ60 Assay of Nonspecific Autophagy
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93. A novel quantitative flow cytometry-based assay for autophagy
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94. Analysis of the Membrane Structures Involved in Autophagy in Yeast by Freeze-Replica Method.
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95. How Shall I Eat Thee?
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96. The Dark Side of EGFP: Defective Polyubiquitination
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97. The expression ofbeclin 1is associated with favorable prognosis in stage IIIB colon cancers
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98. Identification and functional analysis of Joka2, a tobacco member of the family of selective autophagy cargo receptors
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99. Fluorescence protease protection of GFP chimeras to reveal protein topology and subcellular localization
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100. Inhibition of Hepatocytic Autophagy by Adenosine, Aminoimidazole-4-carboxamide Riboside, and N 6-Mercaptopurine Riboside
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101. Atg26-Mediated Pexophagy Is Required for Host Invasion by the Plant Pathogenic Fungus Colletotrichum orbiculare
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102. p62/SQSTM1 is overexpressed and prominently accumulated in inclusions of sporadic inclusion-body myositis muscle fibers, and can help differentiating it from polymyositis and dermatomyositis
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103. SKD1 AAA ATPase-Dependent Endosomal Transport is Involved in Autolysosome Formation.
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104. Autophagy supports<i>Candida glabrata</i>survival during phagocytosis
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105. MiR-17/20/93/106 promote hematopoietic cell expansion by targeting sequestosome 1–regulated pathways in mice
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106. The molecular mechanism of mitochondria autophagy in yeast
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107. A Vacuolar-Type H + -ATPase in a Nonvacuolar Organelle Is Required for the Sorting of Soluble Vacuolar Protein Precursors in Tobacco Cells
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108. Autophagy is induced during cell death by incompatibility and is essential for differentiation in the filamentous fungus Podospora anserina
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109. Isolation of autophagic vacuoles from rat liver: morphological and biochemical characterization
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110. Cell death and proliferation in acute slices and organotypic cultures of mammalian CNS
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111. Eating the strangers within: host control of intracellular bacteria via xenophagy
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112. Rosella: A fluorescent pH-biosensor for reporting vacuolar turnover of cytosol and organelles in yeast
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113. Functional Analysis of the ATG8 Homologue Ao atg8 and Role of Autophagy in Differentiation and Germination in Aspergillus oryzae
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