The DOI matches its Crossref record; 37 of the 37 references it cites were found in a registry or an index.
Coronavirus NSP6 restricts autophagosome expansion
Open accessAbstract
Autophagy is a cellular response to starvation that generates autophagosomes to carry long-lived proteins and cellular organelles to lysosomes for degradation. Activation of autophagy by viruses can provide an innate defense against infection, and for (+) strand RNA viruses autophagosomes can facilitate assembly of replicase proteins. We demonstrated that nonstructural protein (NSP) 6 of the avian coronavirus, infectious bronchitis virus (IBV), generates autophagosomes from the ER. A statistical analysis of MAP1LC3B puncta showed that NSP6 induced greater numbers of autophagosomes per cell compared with starvation, but the autophagosomes induced by NSP6 had smaller diameters compared with starvation controls. Small diameter autophagosomes were also induced by infection of cells with IBV, and by NSP6 proteins of MHV and SARS and NSP5, NSP6, and NSP7 of arterivirus PRRSV. Analysis of WIPI2 puncta induced by NSP6 suggests that NSP6 limits autophagosome diameter at the point of omegasome formation. IBV NSP6 also limited autophagosome and omegasome expansion in response to starvation and Torin1 and could therefore limit the size of autophagosomes induced following inhibition of MTOR signaling, as well as those induced independently by the NSP6 protein itself. MAP1LC3B-puncta induced by NSP6 contained SQSTM1, which suggests they can incorporate autophagy cargos. However, NSP6 inhibited the autophagosome/lysosome expansion normally seen following starvation. Taken together the results show that coronavirus NSP6 proteins limit autophagosome expansion, whether they are induced directly by the NSP6 protein, or indirectly by starvation or chemical inhibition of MTOR signaling. This may favor coronavirus infection by compromising the ability of autophagosomes to deliver viral components to lysosomes for degradation.
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Cites
Pankiv, S., Clausen, T. H., Lamark, T., Brech, A., Bruun, J.-A., Outzen, H., Øvervatn, A., Bjørkøy, G., & Johansen, T. (2007) · Journal of Biological Chemistry · doi:10.1074/jbc.m702824200 · Cited by 4,578
Autophagosome formation: core machinery and adaptations
Xie, Z., & Klionsky, D. J. (2007) · Nature Cell Biology · doi:10.1038/ncb1007-1102 · Cited by 2,164
Axe, E. L., Walker, S. A., Manifava, M., Chandra, P., Roderick, H. L., Habermann, A., Griffiths, G., & Ktistakis, N. T. (2008) · The Journal of Cell Biology · doi:10.1083/jcb.200803137 · Cited by 1,885
Autophagosomes form at ER–mitochondria contact sites
Hamasaki, M., Furuta, N., Matsuda, A., Nezu, A., Yamamoto, A., Fujita, N., Oomori, H., Noda, T., Haraguchi, T., Hiraoka, Y., et al. (2013) · Nature · doi:10.1038/nature11910 · Cited by 1,683
Termination of autophagy and reformation of lysosomes regulated by mTOR
Yu, L., McPhee, C. K., Zheng, L., Mardones, G. A., Rong, Y., Peng, J., Mi, N., Zhao, Y., Liu, Z., Wan, F., et al. (2010) · Nature · doi:10.1038/nature09076 · Cited by 1,544
Coronavirus avian infectious bronchitis virus
Cavanagh, D. (2007) · Veterinary Research · doi:10.1051/vetres:2006055 · Cited by 1,053
Knoops, K., Kikkert, M., Worm, S. H. E. V. D., Zevenhoven-Dobbe, J. C., van der Meer, Y., Koster, A. J., Mommaas, A. M., & Snijder, E. J. (2008) · PLoS Biology · doi:10.1371/journal.pbio.0060226 · Cited by 1,015
Zhong, Y., Wang, Q. J., Li, X., Yan, Y., Backer, J. M., Chait, B. T., Heintz, N., & Yue, Z. (2009) · Nature Cell Biology · doi:10.1038/ncb1854 · Cited by 1,005
HSV-1 ICP34.5 Confers Neurovirulence by Targeting the Beclin 1 Autophagy Protein
Orvedahl, A., Alexander, D., Tallóczy, Z., Sun, Q., Wei, Y., Zhang, W., Burns, D., Leib, D. A., & Levine, B. (2007) · Cell Host & Microbe · doi:10.1016/j.chom.2006.12.001 · Cited by 857
Subversion of Cellular Autophagosomal Machinery by RNA Viruses
Jackson, W. T., Giddings, T. H., Taylor, M. P., Mulinyawe, S., Rabinovitch, M., Kopito, R. R., & Kirkegaard, K. (2005) · PLoS Biology · doi:10.1371/journal.pbio.0030156 · Cited by 818
Polson, H. E. J., de Lartigue, J., Rigden, D. J., Reedijk, M., Urbé, S., Clague, M. J., & Tooze, S. A. (2010) · Autophagy · doi:10.4161/auto.6.4.11863 · Cited by 712
Autophagy Protects against Sindbis Virus Infection of the Central Nervous System
Orvedahl, A., MacPherson, S., Sumpter, R., Tallóczy, Z., Zou, Z., & Levine, B. (2010) · Cell Host & Microbe · doi:10.1016/j.chom.2010.01.007 · Cited by 558
The Molecular Mechanism of Autophagy
Wang, C.-W., & Klionsky, D. J. (2003) · Molecular Medicine · doi:10.1007/bf03402040 · Cited by 530
Suhy, D. A., Giddings, T. H., & Kirkegaard, K. (2000) · Journal of Virology · doi:10.1128/jvi.74.19.8953-8965.2000 · Cited by 508
Autophagy Is an Essential Component of Drosophila Immunity against Vesicular Stomatitis Virus
Shelly, S., Lukinova, N., Bambina, S., Berman, A., & Cherry, S. (2009) · Immunity · doi:10.1016/j.immuni.2009.02.009 · Cited by 472
English, L., Chemali, M., Duron, J., Rondeau, C., Laplante, A., Gingras, D., Alexander, D., Leib, D., Norbury, C., Lippé, R., et al. (2009) · Nature Immunology · doi:10.1038/ni.1720 · Cited by 459
Autophagy requires endoplasmic reticulum targeting of the PI3-kinase complex via Atg14L
Matsunaga, K., Morita, E., Saitoh, T., Akira, S., Ktistakis, N. T., Izumi, T., Noda, T., & Yoshimori, T. (2010) · Journal of Cell Biology · doi:10.1083/jcb.200911141 · Cited by 456
Eating Oneself and Uninvited GuestsAutophagy-Related Pathways in Cellular Defense
LEVINE, B. (2005) · Cell · doi:10.1016/s0092-8674(05)00043-7 · Cited by 455
Coronavirus Replication Complex Formation Utilizes Components of Cellular Autophagy
Prentice, E., Jerome, W. G., Yoshimori, T., Mizushima, N., & Denison, M. R. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m306124200 · Cited by 450
Microtubules Facilitate Autophagosome Formation and Fusion of Autophagosomes with Endosomes
Köchl, R., Hu, X. W., Chan, E. Y. W., & Tooze, S. A. (2006) · Traffic · doi:10.1111/j.1600-0854.2005.00368.x · Cited by 436
Reggiori, F., Monastyrska, I., Verheije, M. H., Calì, T., Ulasli, M., Bianchi, S., Bernasconi, R., de Haan, C. A. M., & Molinari, M. (2010) · Cell Host & Microbe · doi:10.1016/j.chom.2010.05.013 · Cited by 383
Proikas-Cezanne, T., Waddell, S., Gaugel, A., Frickey, T., Lupas, A., & Nordheim, A. (2004) · Oncogene · doi:10.1038/sj.onc.1208331 · Cited by 332
Cottam, E. M., Maier, H. J., Manifava, M., Vaux, L. C., Chandra-Schoenfelder, P., Gerner, W., Britton, P., Ktistakis, N. T., & Wileman, T. (2011) · Autophagy · doi:10.4161/auto.7.11.16642 · Cited by 269
Self-citationRegulation of autophagy by phosphatidylinositol 3‐phosphate
Burman, C., & Ktistakis, N. T. (2010) · FEBS Letters · doi:10.1016/j.febslet.2010.01.011 · Cited by 234
Aggresomes and Autophagy Generate Sites for Virus Replication
Wileman, T. (2006) · Science · doi:10.1126/science.1126766 · Cited by 232
Self-citationCoronavirus Replication Does Not Require the Autophagy Gene ATG5
Zhao, Z., Thackray, L. B., Miller, B. C., Lynn, T. M., Becker, M. M., Ward, E., Mizushima, N., Denison, M. R., & Virgin, IV (2007) · Autophagy · doi:10.4161/auto.4782 · Cited by 195
Current knowledge of the pre‐autophagosomal structure (PAS)
Suzuki, K., & Ohsumi, Y. (2010) · FEBS Letters · doi:10.1016/j.febslet.2010.02.001 · Cited by 181
Modification of Cellular Autophagy Protein LC3 by Poliovirus
Taylor, M. P., & Kirkegaard, K. (2007) · Journal of Virology · doi:10.1128/jvi.00755-07 · Cited by 166
Su, W., Chao, T., Huang, Y., Weng, S., Jeng, K.-S., & Lai, M. M. C. (2011) · Journal of Virology · doi:10.1128/jvi.00173-11 · Cited by 165
Porcine reproductive and respiratory syndrome virus induces autophagy to promote virus replication
Sun, M., Huang, L., Wang, R. Y., Yu, Y., Li, C., Li, P.-P., Hu, X., Hao, H.-P., Ishag, H. Z. A., & Mao, X. (2012) · Autophagy · doi:10.4161/auto.21159 · Cited by 147
Knoops, K., Bárcena, M., Limpens, R. W. A. L., Koster, A. J., Mommaas, A. M., & Snijder, E. J. (2011) · Journal of Virology · doi:10.1128/jvi.06677-11 · Cited by 139
Chi, P. I., Huang, W., Lai, I., Cheng, C. Y., & Liu, H. (2012) · Journal of Biological Chemistry · doi:10.1074/jbc.m112.390245 · Cited by 92
Hindupur, S. K., & Rangarajan, A. (2009) · Journal of Virology · doi:10.1128/jvi.00603-09 · Cited by 80
An autophagy-independent role for LC3 in equine arteritis virus replication
Monastyrska, I., Ulaşlı, M., Rottier, P. J. M., Guan, J., Reggiori, F., & de Haan, C. A. M. (2012) · Autophagy · doi:10.4161/auto.22743 · Cited by 79
Subversion of the Cellular Autophagy Pathway by Viruses
Kirkegaard, K. (2009) · Current topics in microbiology and immunology · doi:10.1007/978-3-642-00302-8_16 · Cited by 79
Maier, H. J., Cottam, E. M., Stevenson-Leggett, P., Wilkinson, J. A., Harte, C. J., Wileman, T., & Britton, P. (2013) · Autophagy · doi:10.4161/auto.23465 · Cited by 46
Self-citationOrigins of Membrane Vesicles Generated During Replication of Positive-strand RNA Viruses
Cottam, E. M., Pierini, R., Roberts, R. L., & Wileman, T. E. (2009) · Future Virology · doi:10.2217/fvl.09.26 · Cited by 18
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Fung, T. S., & Liu, D. X. (2019) · Annual Review of Microbiology · doi:10.1146/annurev-micro-020518-115759 · Cited by 960
Autophagy in inflammation, infection, and immunometabolism
Deretic, V. (2021) · Immunity · doi:10.1016/j.immuni.2021.01.018 · Cited by 862
Multilevel proteomics reveals host perturbations by SARS-CoV-2 and SARS-CoV
Stukalov, A., Girault, V., Grass, V., Karayel, O., Bergant, V., Urban, C., Haas, D. A., Huang, Y., Oubraham, L., Wang, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03493-4 · Cited by 685
Yoshimoto, F. K. (2020) · The Protein Journal · doi:10.1007/s10930-020-09901-4 · Cited by 543
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Yadav, R., Chaudhary, J. K., Jain, N., Chaudhary, P. K., Khanra, S., Dhamija, P., Sharma, A., Kumar, A., & Handu, S. (2021) · Cells · doi:10.3390/cells10040821 · Cited by 451
Metadata
- Authors
- Cottam, E. M., Whelband, M. C., & Wileman, T.
- Venue
- Autophagy
- Publisher
- Informa UK Limited
- Published
- 2014-06-11
- Volume
- 10
- Issue
- 8
- Pages
- 1426-1441
- ISSN
- 1554-8627 (ISSN-L)
- 1554-8635
- OpenAlex
- W1985360059
- Cited by
- 291
- References
- 37
- FWCI
- 2.70
- Type
- journal article
- Language
- en
- Open access
- hybrid
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