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WIPI-1α (WIPI49), a member of the novel 7-bladed WIPI protein family, is aberrantly expressed in human cancer and is linked to starvation-induced autophagy
Abstract
WD-repeat proteins are regulatory beta-propeller platforms that enable the assembly of multiprotein complexes. Here, we report the functional and bioinformatic analysis of human WD-repeat protein Interacting with PhosphoInosides (WIPI)-1alpha (WIPI49/Atg18), a member of a novel WD-repeat protein family with autophagic capacity in Saccharomyces cerevisiae and Caenorhabditis elegans, recently identified as phospholipid-binding effectors. Our phylogenetic analysis divides the WIPI protein family into two paralogous groups that fold into 7-bladed beta-propellers. Structural modeling identified two evolutionary conserved interaction sites in WIPI propellers, one of which may bind phospholipids. Human WIPI-1alpha has LXXLL signature motifs for nuclear receptor interactions and binds androgen and estrogen receptors in vitro. Strikingly, human WIPI genes were found aberrantly expressed in a variety of matched tumor tissues including kidney, pancreatic and skin cancer. We found that endogenous hWIPI-1 protein colocalizes in part with the autophagosomal marker LC3 at punctate cytoplasmic structures in human melanoma cells. In addition, hWIPI-1 accumulated in large vesicular and cup-shaped structures in the cytoplasm when autophagy was induced by amino-acid deprivation. These cytoplasmic formations were blocked by wortmannin, a classic inhibitor of PI-3 kinase-mediated autophagy. Our data suggest that WIPI proteins share an evolutionary conserved function in autophagy and that autophagi…
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Endogenous WIPI2 has not been detected on mRFP-LC3- or LAMP2-positive autophagosomes or autolysosomes using immunolabeling.
“but endogenous WIPI2 has not been detected on mRFP-LC3-or LAMP2-positive autophagosomes or autolysosomes using immunolabeling [833].”
From Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition) 1 (2021) · cites this paper as [833]
Human WIPI1 and WIPI2 function downstream of the class III phosphatidylinositol 3-kinase complex I and upstream of both the ATG12 and LC3 ubiquitin-like conjugation systems.
“Human WIPI1 and WIPI2 function downstream of the class III phosphatidylinositol 3-kinase complex I (PIK3C3/VPS34, BECN1, PIK3R4/VPS15, ATG14, NRBF2) and upstream of both the ATG12 and LC3 ubiquitin-like conjugation systems [833,837,838].”
From Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition) 1 (2021) · cites this paper as [833]
The level of transiently expressed GFP-WIPI1 puncta is cell context-dependent.
“and the level of transiently expressed GFP-WIPI1 puncta is cell context-dependent [833, 834].”
From Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition) 1 (2021) · cites this paper as [833]
Endogenous WIPI1 puncta cannot be detected in many cell types.
“With regard to detection of the WIPI proteins, endogenous WIPI1 puncta cannot be detected in many cell types [833],”
From Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition) 1 (2021) · cites this paper as [833]
These proteins bind PtdIns3P present at the phagophore and autophagosome and also PtdIns(3,5)P2.
“These proteins bind PtdIns3P that is present at the phagophore and autophagosome [833,834] and also PtdIns(3,5)P2.”
From Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition) 1 (2021) · cites this paper as [833]
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Metadata
- Authors
- Proikas-Cezanne, T., Waddell, S., Gaugel, A., Frickey, T., Lupas, A., & Nordheim, A.
- Venue
- Oncogene
- Published
- 2004-12-16
- Volume
- 23
- Issue
- 58
- Pages
- 9314-9325
- ISSN
- 0950-9232
- 1476-5594
- Cited by
- 332
- References
- 3
- Language
- en
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