PreprintCited by 0Neuroinflammation and Neurodegeneration MechanismsAlzheimer's disease research and treatmentsPhagocytosis and Immune Regulation

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A self-limiting, TREM2-dependent anabolic program confers microglial resilience in Alzheimer’s disease

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Abstract

Microglia are key drivers of Alzheimer’s disease (AD), and TREM2, one of the strongest genetic risk factors, enables the disease-associated microglia (DAM) state required for plaque engagement. How TREM2 sustains this protection, and why it falters as disease advances, remain unclear. Using proteomics, single-cell transcriptomics, and in vivo metabolic labeling, we show that plaque-associated microglia mount a TREM2-dependent anabolic program coupling nascent protein synthesis to mitochondrial biogenesis. This program, not the DAM signature, marks phagocytically competent microglia; its loss is associated with proteostatic overload and mitochondrial dysfunction. Unexpectedly, this anabolic program is self-limiting, peaking at low amyloid burden and declining as burden rises. This decline is conserved in humans: across 523 donors, anabolic capacity tracks TREM2 but falls at advanced Braak stage even as DAM signature keeps rising. Thus, anabolic capacity, rather than activation state, marks microglial resilience in AD, and sustained stimulation of phagocytosis by anti-amyloid antibodies risks biosynthetic exhaustion and self-limiting efficacy.

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Research works printed but not linked: 40

  1. 10.1083/jcb.201709069 · DOI · Paper page
  2. 10.1038/ng.2802 · DOI · Paper page
  3. 10.1016/j.cell.2017.05.018 · DOI · Paper page
  4. 10.1016/j.immuni.2017.08.008 · DOI · Paper page
  5. 10.1056/NEJMoa1211851 · DOI · Paper page
  6. 10.1056/NEJMoa1211103 · DOI · Paper page
  7. 10.1016/j.cell.2015.01.049 · DOI · Paper page
  8. 10.1016/j.neuron.2016.05.003 · DOI · Paper page
  9. 10.1016/j.immuni.2013.04.005 · DOI · Paper page
  10. 10.1016/j.cell.2017.07.023 · DOI · Paper page
  11. 10.1038/s41593-024-01600-y · DOI · Paper page
  12. 10.1038/nri3198 · DOI · Paper page
  13. 10.1056/NEJ-Moa2212948 · DOI
  14. 10.1038/nature19323 · DOI · Paper page
  15. 10.1038/s41593-025-02125-8 · DOI
  16. 10.1523/JNEUROSCI.0202-24.2024 · DOI
  17. 10.1093/bioinformatics/bts635 · DOI · Paper page
  18. Dobin, A. & Gingeras, T. R . Optimizing RNA-Seq Mapping with STAR. Methods Mol Biol 1415, 245–262 (2016). · DOI
  19. 10.1093/bioinformatics/ btx330 · DOI
  20. Liao, Y. , Smyth, G. K. & Shi, W . featureCounts: an efficient general purpose program for assigning sequence reads to genomic features. Bioinformatics (2014). · DOI · Paper page
  21. Love, M. I. , Huber, W. & Anders, S . Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol 15, 550 (2014). · DOI · Paper page
  22. 2024, EnhancedVolcano: Publication-ready volcano plots with enhanced colouring and labeling, R package version, 1, 2024
  23. 10.1093/nar/gkv007 · DOI · Paper page
  24. Wu, T. , et al. clusterProfiler 4.0: A universal enrichment tool for interpreting omics data. Innovation (Camb ) 2, 100141 (2021). · DOI
  25. 2012, Fiji: an open-source platform for biological-image analysis, Nature methods, 9, 676, 10.1038/nmeth.2019 · DOI · Paper page
  26. 2017, glmmTMB Balances Speed and Flexibility Among Packages for Zero-inflated Generalized Linear Mixed Modeling, The R Journal, 9, 378
  27. 2008, Implementing a Class of Permutation Tests: The coin Package, Journal of Statistical Software, 28, 1
  28. 10.1016/J.CELL.2021.04.048 · DOI · Paper page
  29. 2019, DoubletFinder: Doublet Detection in Single-Cell RNA Sequencing Data Using Artificial Nearest Neighbors, Cell Syst, 8, 329, 10.1016/j.cels.2019.03.003 · DOI · Paper page
  30. McInnes, L. , Healy, J. & Melville, J. Umap: Uniform manifold approximation and projection for dimension reduction. arXiv preprint arXiv:1802.03426 (2018). · DOI · Paper page
  31. 10.1016/j.celrep.2019.03.099 · DOI · Paper page
  32. Chen, H. & Boutros, P. C . VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R. BMC Bioinformatics 12, 35 (2011). · DOI
  33. Slobodyanyuk, M. , et al. Directional integration and pathway enrichment analysis for multi-omics data. Nat Commun 15, 5690 (2024). · DOI
  34. Wolf, F. A. , Angerer, P. & Theis, F. J . SCANPY: large-scale single-cell gene expression data analysis. Genome Biol 19, 15 (2018). · DOI · Paper page
  35. Virshup, I. , Rybakov, S. , Theis, F. J. , Angerer, P. & Wolf, F . A. anndata: Access and store annotated data matrices. Journal of Open Source Software 9, 4371 (2024). · DOI
  36. Traag, V. A. , Waltman, L. & Van Eck, N. J . From Louvain to Leiden: guaranteeing well-connected communities. Scientific reports 9, 5233 (2019). · DOI · Paper page
  37. McInnes, L. , Healy, J. & Melville, J. Umap: Uniform manifold approximation and projection for dimension reduction. arXiv preprint arXiv:1802.03426 (2018). · DOI · Paper page
  38. 10.1038/s41592-019-0686-2 · DOI · Paper page
  39. 10.1109/mcse.2007.55 · DOI · Paper page
  40. Waskom, M. L . Seaborn: statistical data visualization. Journal of open source software 6, 3021 (2021). · DOI · Paper page

Metadata

Authors
Lin, D., Atkinson, J. R., Wu, W., Chen, M., Jayasekara, S., Segal, B. M., Ma, A., & Gao, J.
Affiliations
  • The Ohio State University Wexner Medical Center (US)
  • Pelotonia (US)
Corresponding author
Gao, Jie
Venue
bioRxiv (Cold Spring Harbor Laboratory)
Publisher
openRxiv
Published
2026-09-20
OpenAlex
W7213758378
Cited by
0
References
9
Type
posted content
Language
en
Open access
Locations
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
  • PubMed (publishedVersion)
  • PubMed Central (publishedVersion, cc-by-nc-nd)
Funders
  • BrightFocus Foundation
  • Ohio State University
  • National Institutes of Health
  • RIKEN
Topics
  • Life Sciences › Neuroscience › Neurology › Neuroinflammation and Neurodegeneration Mechanisms
  • Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Alzheimer's disease research and treatments
  • Life Sciences › Immunology and Microbiology › Immunology › Phagocytosis and Immune Regulation
Keywords
TREM2, Alzheimer's disease, microglia, disease-associated microglia, mitochondrial biogenesis, nascent protein synthesis, phagocytosis, amyloid plaques, proteostasis, mitochondrial dysfunction, anti-amyloid antibodies, Braak stages, microglial activation

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