Cited by 1,935Neuroinflammation and Neurodegeneration MechanismsAlzheimer's disease research and treatmentsNeurological Disease Mechanisms and Treatments

Microglia in Alzheimer’s disease

Open access
Hansen, David V., Hanson, Jesse E., Sheng, Morgan·2018·Journal of Cell Biology

Abstract

Proliferation and activation of microglia in the brain, concentrated around amyloid plaques, is a prominent feature of Alzheimer’s disease (AD). Human genetics data point to a key role for microglia in the pathogenesis of AD. The majority of risk genes for AD are highly expressed (and many are selectively expressed) by microglia in the brain. There is mounting evidence that microglia protect against the incidence of AD, as impaired microglial activities and altered microglial responses to β-amyloid are associated with increased AD risk. On the other hand, there is also abundant evidence that activated microglia can be harmful to neurons. Microglia can mediate synapse loss by engulfment of synapses, likely via a complement-dependent mechanism; they can also exacerbate tau pathology and secrete inflammatory factors that can injure neurons directly or via activation of neurotoxic astrocytes. Gene expression profiles indicate multiple states of microglial activation in neurodegenerative disease settings, which might explain the disparate roles of microglia in the development and progression of AD pathology.

AI snapshot

Written from the paper’s full text.

TL;DR

This review synthesizes human genetic and cell-biological evidence that microglia play a dual role in Alzheimer's disease: protective early (TREM2-dependent clearance and compaction of Aβ) and harmful later (complement-mediated synapse engulfment, inflammatory cytokine release, and tau pathology spread). The authors propose that the detrimental microglial state emerges later in disease, complicating therapeutic strategies that target microglia.

Key findings

  • Human genetics implicate microglia in late-onset AD: over 20 loci associate with AD risk, and most identified risk genes are expressed selectively or preferentially in microglia; apart from APOE, common variants confer only minor effects (∼10–20%) on AD risk.
  • The TREM2 R47H variant (carried by <0.5% of most populations) increases AD risk approximately threefold and appears to be a loss-of-function mutation impairing TREM2-mediated microglial activation, ligand binding (apoE, apoJ/CLU), and Aβ uptake; Trem2 knockout exacerbates plaque accumulation at later ages (8+ months) in β-amyloidosis mouse models.
  • APOE genotype strongly modulates risk: relative to apoE3, a single apoE4 allele confers approximately threefold increased risk and apoE2 approximately twofold reduced risk; apoE4 appears to reduce Aβ clearance and increase plaque deposition.
  • Microglia can be harmful: complement (C1q, C3) and microglia mediate synapse loss in amyloid models, CSF1R-inhibitor microglia depletion protects against synapse loss and rescues behavioral deficits, and microglia are implicated in tau spread; in microglia-depleted brains plaque size increased ∼13% over 1 wk.
  • Transcriptional profiling identifies a disease-associated microglial (DAM) state with reduced homeostatic genes (e.g., Cx3cr1, P2ry12, Tmem119) and induced neurodegeneration genes (e.g., Apoe, Axl, Csf1, Clec7a, Cst7, Igf1, Itgax), with subtle two- to threefold increases in Trem2 and Tyrobp mRNAs; DAM induction depends largely on TREM2.

Methods

  • Narrative review (Hansen, Hanson, and Sheng) synthesizing human genetics (GWAS and rare-variant studies), mouse model studies, and microglial transcriptomic profiling; no primary data are generated.
  • Evidence reviewed includes GWAS-identified AD risk loci (Table 1), TREM2 and other microglial risk genes, complement-pathway and microglia-depletion experiments in amyloid and tau mouse models (Fig. 3), and RNA-sequencing/single-cell studies of microglial activation states.
  • The authors integrate these findings into a proposed two-phase model of microglial function in AD pathogenesis.

Limitations

  • Stated by the paper: exactly how microglia are involved in the disease mechanism "is not settled"; evidence for microglial-mediated neuronal damage comes "mostly in mouse models"; TREM2 studies in tau models report seemingly conflicting roles (neuroprotective in PS19 vs. neurotoxic in hTau) that the authors attribute partly to analysis at different disease stages; whether the TREM2-dependent transcriptional response is helpful, damaging, or incidental in different disease contexts requires further study.
  • Stated by the paper: studies of microglial gene expression in purified microglia or at the single-cell level from AD brains "have lagged behind" mouse work, and there was "surprisingly limited overlap" in aging-regulated microglial genes between human and mouse, underscoring the need for human microglia profiling at different disease stages and genotypes.
  • Evident from the text: many mechanistic conclusions rest on mouse models that overexpress mutant APP/PS1 or tau transgenes, and the authors note conflicting complement-pathway results (e.g., C3 knockout/inhibition reported both to provide neuroprotection and to increase amyloid burden), so causal direction in humans remains uncertain.

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Integrity signals

Registry

Crossref · 10.1083/jcb.201709069

Cites

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Statistics

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Claims the paper makes

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  • Findingcitation

    The majority of Alzheimer's disease-associated risk genes are expressed selectively or preferentially in microglia relative to other brain cell types.

    “a striking feature of the identified risk genes is that the majority of them are expressed selectively or preferentially in microglia relative to other cell types in the brain (Fig. 1 A; Srinivasan et al., 2016; Zhang et al., 2016).”
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  • Findingcitation

    In a meta-analysis of microglial transcriptomic profiles from various models of CNS diseases, we identified several modules of coordinately regulated genes, including a neurodegeneration-associated module highly similar to the DAM genes.

    “In a meta-analysis of microglial transcriptomic profiles from various models of CNS diseases (neurodegenerative, demyelinating, ischemic, infectious, inflammatory, and neoplastic), we identified several modules of coordinately regulated genes, including a neurodegeneration-associated module highly similar to the DAM genes mentioned previously (Friedman et al., 2017).”
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  • Premisecitation

    Rare genetic variants associated with Alzheimer's disease have implicated microglia in determining the risk of Alzheimer's disease.

    “rare genetic variants associated with AD (found by gene sequencing or exome array) have also implicated microglia in determining the risk of AD (Guerreiro et al., 2013; Jonsson et al., 2013; Sims et al., 2017).”
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  • Interpretationreasoning

    Microglial dysfunction is a contributing factor, rather than an attendant feature, of Alzheimer's disease pathogenesis.

    “This broad trend implicates microglial dysfunction as a contributing factor, rather than an attendant feature, of AD pathogenesis.”
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  • Premisecitation

    Aβ aggregates are much more efficiently taken up by microglia when Aβ is complexed with lipoproteins such as LDL, apoE, and CLU/apoJ.

    “Aβ aggregates are much more efficiently taken up by microglia when Aβ is complexed with lipoproteins such as LDL, apoE, and CLU/apoJ (Terwel et al., 2011; Yeh et al., 2016).”
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    Findingcitation

    Using these modules to probe the single-cell expression data of Keren-Shaul et al. (2017), we revealed a unique subset of microglia, distinct from the DAM cells, that expressed an interferon-related gene module and increased numerically in brains with β-amyloid pathology.

    “Using these modules to probe the single-cell expression data of Keren-Shaul et al. (2017), we revealed a unique subset of microglia, distinct from the DAM cells, that expressed an interferon-related gene module and increased numerically in brains with β-amyloid pathology (Friedman et al., 2017).”
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    Interpretationnone given

    Once activated, microglia can have harmful actions in Alzheimer's disease, such as being a source of inflammatory factors and mediating the engulfment of neuronal synapses.

    “We also review the evidence that, once activated, microglia can have harmful actions in AD, such as being the source of inflammatory factors and mediating the engulfment of neuronal synapses.”
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    Interpretationnone given

    Microglia have protective functions that restrain the toxic accumulation of β-amyloid and prevent the development of Alzheimer's disease.

    “In this review, we consider the genetic and cell biological data indicating that microglia have protective functions that restrain the toxic accumulation of β-amyloid and prevent the development of AD.”
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    Premisecitation

    TREM2-ligand interactions are impaired by TREM2 variants that increase Alzheimer's disease risk, implying that these variants are at least partial loss-of-function mutants.

    “TREM2–ligand interactions are impaired by TREM2 variants that increase AD risk (Wang et al., 2015; Kober et al., 2016; Yeh et al., 2016; Song et al., 2017), implying that these AD variants are at least partial loss-of-function mutants.”
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    Premisecitation

    TREM2 functions as a cell surface receptor on microglia; via DAP12/TYROBP, TREM2 stimulation initiates signaling that promotes microglial chemotaxis, phagocytosis, survival, and proliferation.

    “TREM2 functions as a cell surface receptor on microglia; via its interaction with the activating adaptor protein DAP12 (encoded by the TYROBP gene), TREM2 stimulation initiates signal transduction pathways that promote microglial chemotaxis, phagocytosis, survival, and proliferation (Takahashi et al., 2005; Hsieh et al., 2009; Kleinberger et al., 2014; Poliani et al., 2015; Wang et al., 2015, 2016”
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    Premisecitation

    TREM2 is required for microglial phagocytosis of apoptotic neurons, bacteria, LDL and other lipoproteins, and Aβ.

    “TREM2 is required for microglial phagocytosis of a variety of substrates, including apoptotic neurons, bacteria, LDL and other lipoproteins, and Aβ (Takahashi et al., 2005; N’Diaye et al., 2009; Kleinberger et al., 2014; Atagi et al., 2015; Yeh et al., 2016).”
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    Premisecitation

    The interaction of TREM2 with its lipoprotein ligands is impaired by the Alzheimer's disease-linked mutations R47H, R62H, and D87N and completely abolished by Nasu-Hakola disease-linked mutations Y38C and T66M.

    “The interaction of TREM2 with its lipoprotein ligands (LDL, APOE, and CLU) was impaired by the AD-linked mutations of TREM2 (R47H, R62H, and D87N) and completely abolished by Nasu–Hakola disease–linked mutations (Y38C and T66M; Atagi et al., 2015; Bailey et al., 2015; Yeh et al., 2016).”
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    Premisenone given

    TREM2 R47H appears to be a loss-of-function mutation that impairs TREM2-mediated microglial activation.

    “Because R47H appears to be a loss-of-function mutation that impairs TREM2-mediated microglial activation (see the following sections), the study of TREM2 has been instrumental in establishing the view that microglia normally operate in a protective capacity against AD (Jay et al., 2017b; Ulrich et al., 2017; Yeh et al., 2017).”
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    Premisecitation

    TREM2-deficient microglia show reduced uptake of Aβ-lipoprotein complexes in vitro and less evidence of Aβ internalization in vivo.

    “TREM2-deficient microglia showed reduced uptake of Aβ-lipoprotein complexes in vitro (Yeh et al., 2016) and less evidence of Aβ internalization in vivo (Wang et al., 2016; Yuan et al., 2016).”
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    Premisecitation

    TREM2 binds apolipoproteins apoE and clusterin/apoJ, which are themselves encoded by Alzheimer's disease risk genes.

    “Notably, TREM2 binds to apolipoproteins apoE and clusterin (CLU; also known as apoJ), which are themselves encoded by AD risk genes (Atagi et al., 2015; Bailey et al., 2015; Yeh et al., 2016).”
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    Premisecitation

    SHIP1 can interact with the phosphorylated ITAM of DAP12, so it may moderate TREM2 signaling by competing with SYK and PI3K for ITAM occupancy.

    “SHIP1 can interact with the phosphorylated ITAM of DAP12, so it may also moderate TREM2 signaling by competing with SYK and PI3K for ITAM occupancy (Peng et al., 2010).”
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    Interpretationreasoning

    The TREM2-apoE axis plays a key role in microglial clearance of extracellular and cellular detritus and may be generally important for minimizing bystander damage to neurons in neurodegenerative settings.

    “We suggest that the TREM2–apoE axis plays a key role in the microglial clearance of a variety of extracellular and cellular detritus and thus may be generally important for minimizing bystander damage to neurons in neurodegenerative settings.”
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    Interpretationcitation

    The CD33 genotype-phenotype relationship aligns with TREM2: TREM2 R47H reduces TREM2-ligand binding and ITAM signaling and impairs phagocytosis, whereas the CD33 variant prevents CD33-ligand interaction and presumably ITIM signaling and promotes phagocytosis.

    “The CD33 genotype–phenotype relationship nicely aligns with that of TREM2: the TREM2 R47H mutation (which increases AD risk) reduces TREM2–ligand binding and ITAM signaling and impairs phagocytosis, whereas the CD33 variant (which reduces AD risk) prevents the CD33–ligand interaction and presumably ITIM signaling and promotes phagocytosis (Bradshaw et al., 2013; Griciuc et al., 2013).”
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    Premisecitation

    Compaction of protofibrillary Aβ into a dense core plaque requires apoE and is promoted by TREM2.

    “the compaction of protofibrillary Aβ into a dense core plaque, which requires apoE and is promoted by TREM2 (Bales et al., 1997b, 1999; Bien-Ly et al., 2012; Wang et al., 2016; Yuan et al., 2016), could be a protective mechanism that limits neurotoxicity of amyloid deposits once they start to build up in the aging brain.”
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    Interpretationcitation

    Microglia can directly mediate synapse loss and exacerbate tau pathology.

    “we discuss how microglia can directly mediate synapse loss (Wu et al., 2015; Spangenberg and Green, 2017) and exacerbate tau pathology (Leyns and Holtzman, 2017).”
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    Premisecitation

    Carriers of the IL1RAP polymorphism showed reduced signal for microglial activation using a TSPO-binding PET tracer, increased rate of temporal lobe atrophy, and higher likelihood of progression from mild cognitive impairment to Alzheimer's disease.

    “Carriers of the IL1RAP polymorphism also showed reduced signal for microglial activation using a TSPO (translocator protein)-binding positron emission tomography tracer, as well as an increased rate of temporal lobe atrophy and higher likelihood of progression from mild cognitive impairment to AD.”
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    Interpretationreasoning

    Collectively, TREM2 studies suggest several mechanisms by which microglia can protect from accumulation of toxic Aβ species and development of Alzheimer's disease: uptake and clearance of soluble Aβ species, phagocytosis of insoluble fibrillar Aβ deposits, induction of the activated state and chemotaxis, and compaction and corralling of amyloid plaques.

    “Collectively, the TREM2 studies suggest several mechanisms by which microglia can protect from accumulation of toxic Aβ species and development of AD: uptake and clearance of soluble Aβ species, phagocytosis of insoluble fibrillar Aβ deposits, induction of the activated state and chemotaxis, and compaction and corralling of amyloid plaques (Fig. 2).”
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    Premisecitation

    TREM2-deficient microglia fail to congregate or proliferate around plaques, lack the typical morphological changes of microglial activation, and show increased apoptosis.

    “TREM2-deficient microglia fail to congregate or proliferate around plaques, lack the typical morphological changes of microglial activation, and show increased apoptosis (Jay et al., 2015; Wang et al., 2015, 2016; Mazaheri et al., 2017).”
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    Premisecitation

    Electron microscopy studies have detected engulfed synaptic material in the developing hippocampus but not in the hippocampus of adult mice undergoing synapse loss caused by prion disease.

    “electron microscopy studies have detected engulfed synaptic material in the developing hippocampus (Paolicelli et al., 2011), but not in the hippocampus of adult mice undergoing synapse loss caused by prion disease (Sisková et al., 2009; Caleo et al., 2012).”
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    Premisecitation

    Synaptic material is observed within microglia by light microscopy, and this synapse engulfment is reduced in C3 or CR3 knockout mice.

    “Synaptic material is observed within microglia by light microscopy, and this synapse engulfment is reduced in C3 or CR3 knockout mice (Schafer et al., 2012).”
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    Premisenone given

    INPP5D encodes the lipid phosphatase SHIP1, which is preferentially expressed in microglia.

    “INPP5D, which encodes the lipid phosphatase SHIP1, is another AD risk gene preferentially expressed in microglia.”
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    Premisecitation

    Protective corralling functions were more readily observed for small, early stage plaques and appeared compromised in mice lacking one or both copies of Trem2, as well as in human AD tissues from TREM2 R47H carriers.

    “These protective “corralling” functions were more readily observed for small, early stage plaques and appeared compromised in mice lacking one or both copies of Trem2, as well as in human AD tissues from TREM2 R47H carriers (Condello et al., 2015; Wang et al., 2016; Yuan et al., 2016).”
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    Interpretationcitation

    Human microglia in aged brains or in the vicinity of tau pathology may exhibit dystrophic, fragmented morphology, suggesting that Alzheimer's disease develops in the context of reduced neuroprotective microglial function.

    “Human microglia in aged brains or in the vicinity of tau pathology may exhibit dystrophic, fragmented morphology, further suggesting that AD develops in the context of reduced neuroprotective microglial function (Streit et al., 2004, 2009).”
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    Premisecitation

    SHIP1 is involved in a clathrin-independent mode of receptor endocytosis and inhibits phagocytosis in macrophages.

    “SHIP1 is involved in a clathrin-independent mode of receptor endocytosis (Boucrot et al., 2015) and inhibits phagocytosis in macrophages (Cox et al., 2001; Kamen et al., 2007).”
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    Premisecitation

    Synapse pruning by microglia involves the classical complement pathway, with C1q tagging of synapses, opsonization by C3b, and subsequent phagocytosis by microglia.

    “Studies of C1q, C4, C3, and CR3 knockout mice suggest that the mechanism of developmental synapse pruning in the retinogeniculate system involves C1q tagging of synapses, opsonization of synapses by C3b, and subsequent phagocytosis of synapses by microglia (Stevens et al., 2007; Schafer et al., 2012; Sekar et al., 2016; Fig. 3 A).”
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    Premisecitation

    Microglia form a protective barrier around amyloid deposits, compacting amyloid fibrils into a tightly packed and potentially less toxic form, preventing the accretion of new Aβ onto existing plaques, and reducing axonal dystrophy in the nearby neuropil.

    “Recent evidence suggests that microglia form a protective barrier around amyloid deposits, compacting amyloid fibrils into a tightly packed and potentially less toxic form, preventing the accretion of new Aβ onto existing plaques, and reducing axonal dystrophy in the nearby neuropil (Condello et al., 2015).”
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    Interpretationcitation

    Although human genetic data argue that proper microglial function protects against Alzheimer's disease, there is plentiful evidence that unbridled microglia activity can be harmful to neurons in neurodegenerative disease.

    “Although human genetic data argue that proper microglial function protects against AD, there is plentiful evidence that unbridled microglia activity can be harmful to neurons in neurodegenerative disease.”
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    Premisecitation

    With β-amyloid deposition, some microglial processes become static, showing stable association with plaques over days or weeks, with TREM2, DAP12, and phosphotyrosine concentrated in processes adjacent to plaques.

    “With β-amyloid deposition, however, some microglial processes become static, showing stable association with plaques over days or weeks, with TREM2, DAP12, and phosphotyrosine concentrated in those processes adjacent to plaques (Condello et al., 2015; Yuan et al., 2016).”
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    Premisecitation

    The microglial gene expression profile induced by amyloid pathology was broadly dampened in TREM2-deficient mice, indicating a key role of TREM2 in the microglial reaction to Aβ pathology.

    “The microglial gene expression profile induced by amyloid pathology (see later section on transcription) was broadly dampened in TREM2-deficient mice, indicating a key role of TREM2 in the microglial reaction to Aβ pathology (Wang et al., 2015; Keren-Shaul et al., 2017).”
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    Premisecitation

    Amyloid plaques appear a decade or two before clinical symptoms of Alzheimer's disease, but tau pathology and synapse loss correlate best with cognitive impairment during disease progression.

    “Amyloid plaques appear a decade or two before clinical symptoms of AD, but it is tau pathology and synapse loss that correlate best with cognitive impairment during disease progression (Jack et al., 2010).”
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    Interpretationreasoning

    If the INPP5D genotype-expression relationship holds true in microglia, higher SHIP1 level would dampen microglial activation and phagocytosis and might explain the elevated Alzheimer's disease risk.

    “If this relationship between genotype and expression level holds true in microglia, then it might explain the elevated AD risk, because higher SHIP1 level would dampen microglial activation and phagocytosis.”
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    • The authors state this as an assumption: The relationship between INPP5D SNP rs35349669 genotype and INPP5D expression level observed in whole blood holds true in microglia.
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    Premisecitation

    Genetic knockout of C1q or neutralizing antibodies against C1q protect against synapse loss observed in amyloid-bearing mice or induced by injected Aβ.

    “Genetic knockout of C1q or neutralizing antibodies against C1q protect against synapse loss observed in amyloid-bearing mice or induced by injected Aβ (Fonseca et al., 2004; Hong et al., 2016).”
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    Premisecitation

    The PS19 study looked at 9 mo and observed preservation of piriform and entorhinal cortex volume in mice lacking TREM2, whereas tau phosphorylation and aggregation were unchanged.

    “The PS19 study looked at 9 mo, when neurodegeneration is extensive, and observed preservation of piriform and entorhinal cortex volume in mice lacking TREM2, whereas tau phosphorylation and aggregation were unchanged (Leyns et al., 2017).”
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    Premisecitation

    Treatment with CSF1R inhibitors to deplete microglia or disable their proliferation protects against synapse loss and rescues behavioral deficits in amyloidosis mouse models.

    “Treatment with CSF1R inhibitors to deplete microglia or disable their proliferation protects against synapse loss and rescues behavioral deficits in amyloidosis mouse models (Olmos-Alonso et al., 2016; Spangenberg et al., 2016).”
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    Premisecitation

    Trem2 deletion appears neuroprotective in the PS19 model but neurotoxic in the hTau model.

    “Recent studies of TREM2 function in mouse models of tau pathology reported seemingly conflicting roles, with Trem2 deletion appearing neuroprotective in the PS19 model (Leyns et al., 2017) but neurotoxic in the hTau model (Bemiller et al., 2017)”
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    Interpretationcitation

    Besides the well-known effects of apoE4 on amyloid accumulation, apoE4 may contribute to AD pathogenesis by exacerbating neuroinflammation and tau pathology.

    “This suggested that besides the well-known effects of apoE4 on amyloid accumulation, apoE4 may contribute to AD pathogenesis by exacerbating neuroinflammation and tau pathology.”
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    Premisecitation

    Cx3cr1 knockout in amyloid models was reportedly accompanied by increased proinflammatory cytokines, tau pathology, and functional deficits.

    “this was reportedly accompanied by increased proinflammatory cytokines, tau pathology, and functional deficits (Cho et al., 2011; Lee et al., 2014).”
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    Premisecitation

    Mouse models of β-amyloidosis exhibit elevated C1q levels, with increased synaptic localization of C1q even before plaques have formed.

    “Mouse models of β-amyloidosis exhibit elevated C1q levels, with increased synaptic localization of C1q even before plaques have formed (Hong et al., 2016).”
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    • cites Hong et al., 2016 source

      Not checked in the free run.

  • May combine two claims.

    Interpretationreasoning

    Most published studies in amyloidosis mouse models suggest that depleting microglia and blocking complement pathway activation may have beneficial effects in AD, at least in terms of synapse and neuron loss.

    “Thus, although there are conflicting results, most published studies in amyloidosis mouse models suggest that depleting microglia and blocking complement pathway activation may have beneficial effects in AD, at least in terms of synapse and neuron loss (Fig. 3 B).”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Premisecitation

    C1q is expressed in the adult brain, and its protein levels rise steeply with aging, especially in the hippocampus.

    “C1q is expressed in the adult brain, and protein levels rise steeply with aging, especially in the hippocampus (Stephan et al., 2013).”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites Stephan et al., 2013 source

      Not checked in the free run.

  • May combine two claims.

    Premisecitation

    Alzheimer's disease-associated genes include CR1, which plays roles in phagocytosis, clearing immune complexes, and inhibition of complement, and CLU/apoJ, which can function as an inhibitor of the terminal complement complex.

    “AD-associated genes include CR1 (complement receptor 1), which plays roles in phagocytosis, clearing of immune complexes, and inhibition of complement (Khera and Das, 2009; Fonseca et al., 2016), and CLU/apoJ, which reportedly can function as an inhibitor of the terminal complement complex (Murphy et al., 1989; Tschopp et al., 1993; McDonald and Nelsestuen, 1997).”
    Quote in the paperSubstantial claim0 of 3 sources checked
    • cites Khera and Das, 2009

      Not checked in the free run.

    • cites Fonseca et al., 2016 source

      Not checked in the free run.

    • cites Murphy et al., 1989

      Not checked in the free run.

  • May combine two claims.

    Interpretationcitation

    Synapse loss around plaques is dynamically regulated by microglia and can be potentially rescued by microglia depletion despite no change or possible increase in amyloid plaque size.

    “Overall, the findings imply that synapse loss around plaques is dynamically regulated by microglia and can be potentially rescued by microglia depletion despite no change or possible increase in amyloid plaque size.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Premisecitation

    β-Amyloid aggregates/fibrils can act as disease-associated molecular patterns and stimulate Toll-like receptors (TLRs) and the NRLP3 inflammasome, resulting in microglial production of TNFα, IL-1β, and other inflammatory cytokines.

    “β-Amyloid aggregates/fibrils can act as disease-associated molecular patterns and stimulate Toll-like receptors (TLRs) and the NRLP3 inflammasome (Heneka et al., 2013, 2015), resulting in microglial production of TNFα, IL-1β, and other inflammatory cytokines.”
    Quote in the paperSubstantial claim0 of 1 sources checked
    • cites Heneka et al., 2013, 2015

      Couldn’t be matched to a paper in Crossref, so it can’t be checked.

  • May combine two claims.

    Premisecitation

    The hTau study looked at 6 mo and observed greater tau phosphorylation and aggregation in TREM2-deficient mice, arguing for an early protective role of TREM2 in restraining propagation of tauopathy.

    “The study in the hTau model looked at 6 mo (long before neuronal loss) and observed greater tau phosphorylation and aggregation in TREM2-deficient mice, arguing for an early protective role of TREM2 in restraining propagation of tauopathy (Bemiller et al., 2017).”
    Quote in the paperSubstantial claim0 of 1 sources checked
    • cites Bemiller et al., 2017

      Not checked in the free run.

  • May combine two claims.

    Premisecitation

    These studies point to a disease-associated microglial (DAM) state in which expression of a "homeostatic" gene set is reduced and another set of "neurodegeneration" genes is highly induced.

    “These studies point to a disease-associated microglial (DAM) state in which expression of a “homeostatic” gene set is reduced (e.g., Cx3cr1, P2ry12, and Tmem119) and another set of “neurodegeneration” genes is highly induced (e.g., Apoe, Axl, Csf1, Clec7a, Cst7, Igf1, Itgax/CD11c, Lilrb4, Lpl, and some major histocompatibility complex class II genes).”
    Quote in the paperSubstantial claim0 of 3 sources checked
    • cites Orre et al., 2014

      Not checked in the free run.

    • cites Wang et al., 2015 source

      Not checked in the free run.

    • cites Keren-Shaul et al., 2017 source

      Not checked in the free run.

  • May combine two claims.

    Premisecitation

    RNA-sequencing studies of human microglia isolated from non-AD brain tissue showed broad similarity with mouse microglial gene expression profiles, although there were many differences such as higher expression of the C2 and C3 complement genes in human microglia.

    “RNA-sequencing studies of human microglia isolated from non-AD brain tissue (Galatro et al., 2017; Gosselin et al., 2017) showed broad similarity with mouse microglial gene expression profiles, although there were many differences such as higher expression of the C2 and C3 complement genes in human microglia.”
    Quote in the paperSubstantial claim0 of 2 sources checked
    • cites Galatro et al., 2017

      Not checked in the free run.

    • cites Gosselin et al., 2017 source

      Not checked in the free run.

  • May combine two claims.

    Premisenone given

    DAM cells increase in number with progression of amyloidosis, lie spatially close to amyloid plaque, and show evidence of Aβ uptake.

    “Notably, DAM cells increase in number with progression of amyloidosis, lie spatially close to amyloid plaque, and show evidence of Aβ uptake.”
    Quote in the paperNot a substantial claim
47 of 47
  • The paper relies on this without support.

    Soluble oligomeric Aβ is the form that exerts the most toxic effects on neurons.

    “A halo of soluble, oligomeric Aβ (the form currently thought to exert the most toxic effects on neurons) likely exists around amyloid plaques.”
  • The authors state this as an assumption.

    The relationship between INPP5D SNP rs35349669 genotype and INPP5D expression level observed in whole blood holds true in microglia.

    “If this relationship between genotype and expression level holds true in microglia, then it might explain the elevated AD risk, because higher SHIP1 level would dampen microglial activation and phagocytosis.”
  • The paper relies on this without support.

    Microglia express the C3a and C5a receptors that trigger inflammation in response to complement activation.

    “and they express the C3a and C5a receptors that trigger inflammation in response to complement activation.”
  • The paper relies on this without support.

    Findings in amyloidosis and tauopathy mouse models are informative about the mechanisms of microglial function in human AD.

    “most published studies in amyloidosis mouse models suggest that depleting microglia and blocking complement pathway activation may have beneficial effects in AD, at least in terms of synapse and neuron loss”
4 of 4

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • Activated microglia and astrocytes can phagocytize Aβ through multiple receptors to protect neurons, but failure to clear aggregates leads to persistent chronic inflammation and release of proinflammatory/toxic products (cytokines, chemokines, ROS, NO), amplifying immune responses and neurotoxicity.

    “Activated microglia and astrocytes can phagocytize Aβ through multiple receptors to protect neurons,33,34 but failure to clear the aggregates leads to persistent chronic inflammation and the release of a variety of proinflammatory and toxic products, including cytokines, chemokines, reactive oxygen species (ROS) and nitric oxide (NO), which amplify immune responses and lead to neurotoxicity.35”

    From Role of neuroinflammation in neurodegeneration development (2023) · cites this paper as [35]

    Split into 2 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.

    Experimental — accuracy not yet measured
  • The interaction of microglia within the complex brain microenvironment of Alzheimer's disease (e.g. neurons, astrocytes and amyloid-β plaques) is still not well explored.

    “Especially, the interaction of microglia within the complex brain microenvironment of AD (e.g. neurons, astrocytes and amyloid-β plaques) is still not well explored.11, 12”

    From Acoustofluidic assembly of 3D neurospheroids to model Alzheimer's disease (2020) · cites this paper as [12]

    The sections on synapse engulfment and neurotoxic inflammatory signaling discuss microglial interactions with neurons, astrocytes, and amyloid plaques. They do not characterize those interactions as generally 'not well explored'; the paper describes several specific mechanisms and findings instead. The copy provides no page numbers for these passages. (LLM, conf=0.78)

    Experimental — accuracy not yet measured
  • In the brain, PLCγ2 is primarily expressed by microglia, where it serves as an important signaling node downstream of TREM2 and CD33.

    “In the brain, PLCγ2 is primarily expressed by microglia, where it serves as an important signaling node downstream of TREM2 and CD33 (19, 20), both also AD risk genes (21–23).”

    From Multi-omics analyses reveal novel effects of PLCγ2 deficiency in the mouse brain (2023) · cites this paper as [20]

    The section on other AD risk genes says PLCG2 is preferentially or selectively expressed in microglia, and the gene table places it downstream of SYK during ITAM signaling, consistent with a role in TREM2 signaling. It does not place PLCG2 downstream of CD33; the same section describes CD33 as an inhibitory receptor that opposes ITAM receptors and SYK. (LLM, conf=0.88)

    Experimental — accuracy not yet measured
  • Within the brain, PLCγ2 is primarily but not exclusively expressed in microglia, where it serves as an important signaling node downstream of TREM2 and CD33.

    “Within the brain, PLCγ2 is primarily but not exclusively expressed in microglia, where it serves as an important signaling node downstream of TREM2 and CD33 [31, 32], both also AD risk genes [33–35].”

    From PLCγ2 deficiency compromises systemic immune tolerance and erodes myelin homeostasis while enhancing oxidative metabolism in the mouse brain (2026) · cites this paper as [32]

    The section “Potential involvement of other AD risk genes in microglial function” says PLCG2 is preferentially expressed in microglia, and the table in “Human genetic evidence for microglia involvement in late-onset AD” places it downstream of SYK during ITAM signaling, consistent with the described TREM2 pathway. The paper instead describes CD33 as an inhibitory receptor that opposes ITAM receptors and SYK; it does not place PLCγ2 downstream of CD33. Page numbers are unavailable in our copy. (LLM, conf=0.88)

    Experimental — accuracy not yet measured
  • Extensive microglial activation promotes chronic neuroinflammation, which causes neuronal damage and is a major player in AD pathogenesis.

    “Conversely, extensive microglial activation promotes chronic neuroinflammation, which causes neuronal damage and thus is a major player in AD pathogenesis alongside β-amyloid aggregation and hyperphosphorylated tau deposition [4].”

    From The protective PLCγ2-P522R variant mitigates Alzheimer’s disease-associated pathologies by enhancing beneficial microglial functions (2025) · cites this paper as [4]

    The “Microglia and neurotoxic inflammatory signaling” section says proinflammatory microglia can release mediators that harm neurons, and the Conclusion calls microglia crucial players in AD pathogenesis. But the conclusion describes their damaging role as supported mostly by mouse models and says an inflammatory state may correlate with neurodegeneration; it does not establish that extensive activation causes chronic neuroinflammation and neuronal damage as a general, settled account of AD. (LLM, conf=0.85)

    Experimental — accuracy not yet measured

Cites

1 retracted

Flagged first, then by citations

Research works printed but not linked: 1

  1. Bales, 1997, Lack of apolipoprotein E dramatically reduces amyloid beta-peptide deposition, Nat. Genet., 17, 263, 10.1038/ng1197-263 · DOI · Paper page

Cited by

Sorted by citations

Authors
Hansen, D. V., Hanson, J. E., & Sheng, M.
Affiliations
Genentech (US)
Corresponding author
  • Hansen, David V.
  • Sheng, Morgan
Venue
Journal of Cell Biology
Published
2017-12-01
Volume
217
Issue
2
Pages
459-472
ISSN
  • 0021-9525 (ISSN-L)
  • 1540-8140
OpenAlex
W2774947569
Cited by
1,935
References
184
Citations by year
2026: 208 · 2025: 296 · 2024: 296 · 2023: 305 · 2022: 271 · 2021: 241 · 2020: 173 · 2019: 110 · 2018: 33 · 2017: 2
FWCI
8.39
Type
journal article
Language
en
Open access
Locations
  • The Journal of Cell Biology (publishedVersion, cc-by-nc-sa)
  • Europe PMC (PubMed Central) (publishedVersion, cc-by-nc-sa)
  • PubMed Central (publishedVersion, cc-by-nc-sa)
  • PubMed (publishedVersion)
Funders
Genentech
Topics
  • Life Sciences › Neuroscience › Neurology › Neuroinflammation and Neurodegeneration Mechanisms
  • Health Sciences › Medicine › Physiology › Alzheimer's disease research and treatments
  • Life Sciences › Neuroscience › Neurology › Neurological Disease Mechanisms and Treatments
Keywords
microglia, Alzheimer's disease, microglial activation, amyloid plaques, amyloid-beta, risk genes, synaptic loss, tau pathology, neuroinflammation, astrocyte activation, microglial activation states, neurodegeneration
MeSH terms
Alzheimer Disease, Animals, Brain, Humans, Microglia

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Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Claims read by deepseek-v4.1-flash under definition version 3 (extract-v3) on 2026-10-06.

Classified by jev-1.13-20260917 (gold-guideline-v0.2) on 2026-10-06.

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