Koonin, Eugene V.

Distinct groups of RNA viruses associated with thermoacidophilic bacteria

Urayama, S.-I., Fukudome, A., Hirai, M., Okumura, T., Nishimura, Y., Takaki, Y., Kurosawa, N., Koonin, E. V., Krupovic, M., & Nunoura, T. (2023) · Nature Microbiology

Bacteriophages and microbial interactionsPlant and Fungal Interactions Research

Cited by 34

Activation induced deaminase mutational signature overlaps with CpG methylation sites in follicular lymphoma and other cancers

Rogozin, I. B., Lada, A. G., Goncearenco, A., Green, M. R., De, S., Nudelman, G., Panchenko, A. R., Koonin, E. V., & Pavlov, Y. I. (2016) · Scientific Reports

Cancer Genomics and DiagnosticsLymphoma Diagnosis and Treatment

Cited by 33

Evolution of regulatory signatures in primate cortical neurons at cell-type resolution

Kozlenkov, A., Vermunt, M. W., Apontes, P., Li, J., Hao, K., Sherwood, C. C., Hof, P. R., Ely, J. J., Wegner, M., Mukamel, E. A., et al. (2020) · Proceedings of the National Academy of Sciences

Genomics and Chromatin DynamicsEpigenetics and DNA Methylation

Cited by 30

The common ancestry of life

Koonin, E. V., & Wolf, Y. I. (2010) · Biology Direct

Genomics and Phylogenetic StudiesOrigins and Evolution of Life

Cited by 28

Principles and Methods of Sequence Analysis

Koonin, E. V., & Galperin, M. Y. (2003) · Sequence — Evolution — Function

Genomics and Phylogenetic StudiesFractal and DNA sequence analysis

Cited by 26

Mriyaviruses: small relatives of giant viruses

Yutin, N., Mutz, P., Krupovic, M., & Koonin, E. V. (2024) · mBio

Bacteriophages and microbial interactionsPlant and Fungal Interactions Research

Cited by 18

Mriyaviruses: Small Relatives of Giant Viruses

Yutin, N., Mutz, P., Krupovic, M., & Koonin, E. V. (2024) · mBio

Bacteriophages and microbial interactionsPlant and Fungal Interactions Research

Cited by 18

In silico evolution of globular protein folds from random sequences

Sahakyan, H., Babajanyan, S. G., Wolf, Y. I., & Koonin, E. V. (2025) · Proceedings of the National Academy of Sciences

Protein Structure and DynamicsEvolution and Genetic Dynamics

Cited by 15

In silico evolution of globular protein folds from random sequences

Sahakyan, H., Babajanyan, S. G., Wolf, Y. I., & Koonin, E. V. (2024) · Proceedings of the National Academy of Sciences

Protein Structure and DynamicsEvolution and Genetic Dynamics

Cited by 15

Regulatory sequence-based discovery of anti-defense genes in archaeal viruses

Peng, X., Bhoobalan-Chitty, Y., Xu, S., Alvarez, L. M., Karamycheva, S., Makarova, K., & Koonin, E. (2023) · Nature Communications

CRISPR and Genetic EngineeringBacteriophages and microbial interactions

Cited by 14

DNA polymerase diversity reveals multiple incursions of Polintons during nematode evolution

Jeong, D.-E., Sundrani, S., Hall, R. N., Krupovic, M., Koonin, E. V., & Fire, A. Z. (2023) · Molecular Biology and Evolution

Chromosomal and Genetic VariationsNematode management and characterization studies

Cited by 12

DNA polymerase swapping in Caudoviricetes bacteriophages

Yutin, N., Tolstoy, I., Mutz, P., Wolf, Y. I., Krupovic, M., & Koonin, E. V. (2024) · Virology Journal

Bacteriophages and microbial interactionsGenomics and Phylogenetic Studies

Cited by 8

Diversity of Bathyarchaeia viruses in metagenomes and virus-encoded CRISPR system components

Duan, C., Liu, Y., Liu, Y., Liu, L., Cai, M., Zhang, R., Zeng, Q., Koonin, E. V., Krupovic, M., & Li, M. (2024) · ISME Communications

Bacteriophages and microbial interactionsCRISPR and Genetic Engineering

Cited by 7

Diversity of Bathyarchaeia viruses in metagenomes and virus-encoded CRISPR system components

Duan, C., Liu, Y., Liu, Y., Liu, L., Cai, M., Zhang, R., Zeng, Q., Koonin, E. V., Krupovic, M., & Li, M. (2023) · ISME Communications

Bacteriophages and microbial interactionsCRISPR and Genetic Engineering

Cited by 7

CoCoNuTs are a diverse subclass of Type IV restriction systems predicted to target RNA

Bell, R. T., Sahakyan, H., Makarova, K. S., Wolf, Y. I., & Koonin, E. V. (2024) · eLife

CRISPR and Genetic EngineeringBacterial Genetics and Biotechnology

Cited by 3

CoCoNuTs: A diverse subclass of Type IV restriction systems predicted to target RNA

Bell, R. T., Sahakyan, H., Makarova, K. S., Wolf, Y. I., & Koonin, E. V. (2023) · bioRxiv (Cold Spring Harbor Laboratory)

CRISPR and Genetic EngineeringBacterial Genetics and Biotechnology

Cited by 1

CoCoNuTs: A diverse subclass of Type IV restriction systems predicted to target RNA

Bell, R. T., Sahakyan, H., Makarova, K. S., Wolf, Y. I., & Koonin, E. V. (2024) · eLife

CRISPR and Genetic EngineeringBacterial Genetics and Biotechnology

Cited by 0