Mann, Matthias

Time- and compartment-resolved proteome profiling of the extracellular niche in lung injury and repair

Schiller, H. B., Fernandez, I. E., Burgstaller, G., Schaab, C., Scheltema, R. A., Schwarzmayr, T., Strom, T. M., Eickelberg, O., & Mann, M. (2015) · Molecular Systems Biology

Interstitial Lung Diseases and Idiopathic Pulmonary FibrosisAdvanced Proteomics Techniques and Applications

Cited by 261

Unbiased spatial proteomics with single-cell resolution in tissues

Mund, A., Brunner, A.-D., & Mann, M. (2022) · Molecular Cell

Advanced Proteomics Techniques and ApplicationsMass Spectrometry Techniques and Applications

Cited by 259

Extensive quantitative remodeling of the proteome between normal colon tissue and adenocarcinoma

Wiśniewski, J. R., Ostasiewicz, P., Duś, K., Zielińska, D. F., Gnad, F., & Mann, M. (2012) · Molecular Systems Biology

Advanced Proteomics Techniques and ApplicationsBioinformatics and Genomic Networks

Cited by 248

Initial Quantitative Proteomic Map of 28 Mouse Tissues Using the SILAC Mouse

Geiger, T., Velic, A., Macek, B., Lundberg, E., Kampf, C., Nagaraj, N., Uhlen, M., Cox, J., & Mann, M. (2013) · Molecular & Cellular Proteomics

Advanced Proteomics Techniques and ApplicationsBioinformatics and Genomic Networks

Cited by 235

A streamlined mass spectrometry–based proteomics workflow for large-scale FFPE tissue analysis

Coscia, F., Doll, S., Bech, J. M., Schweizer, L., Mund, A., Lengyel, E., Lindebjerg, J., Madsen, G. I., Moreira, J. M., & Mann, M. (2020) · The Journal of Pathology

Advanced Proteomics Techniques and ApplicationsMass Spectrometry Techniques and Applications

Cited by 200

A map of general and specialized chromatin readers in mouse tissues generated by label-free interaction proteomics

Eberl, H. C., Spruijt, C. G., Kelstrup, C. D., Vermeulen, M., & Mann, M. (2013) · Molecular Cell

Genomics and Chromatin DynamicsEpigenetics and DNA Methylation

Cited by 189

Organellar proteomics and phospho-proteomics reveal subcellular reorganization in diet-induced hepatic steatosis

Krahmer, N., Najafi, B., Schueder, F., Quagliarini, F., Steger, M., Seitz, S., Kasper, R., Salinas, F., Cox, J., Uhlenhaut, N. H., et al. (2018) · Developmental Cell

Liver Disease Diagnosis and TreatmentLipid metabolism and biosynthesis

Cited by 188

Spatial single-cell mass spectrometry defines zonation of the hepatocyte proteome

Rosenberger, F. A., Thielert, M., Strauss, M. T., Schweizer, L., Ammar, C., Mädler, S. C., Metousis, A., Skowronek, P., Wahle, M., Madden, K., et al. (2023) · Nature Methods

Advanced Proteomics Techniques and ApplicationsMass Spectrometry Techniques and Applications

Cited by 176

Cell-Type-Resolved Quantitative Proteomics of Murine Liver

Azimifar, S. B., Nagaraj, N., Cox, J., & Mann, M. (2014) · Cell Metabolism

Advanced Proteomics Techniques and ApplicationsMass Spectrometry Techniques and Applications

Cited by 173

A Protein Epitope Signature Tag (PrEST) Library Allows SILAC-based Absolute Quantification and Multiplexed Determination of Protein Copy Numbers in Cell Lines

Zeiler, M., Straube, W. L., Lundberg, E., Uhlen, M., & Mann, M. (2012) · Molecular & Cellular Proteomics

Advanced Proteomics Techniques and ApplicationsMass Spectrometry Techniques and Applications

Cited by 168

On the Proper Use of Mass Accuracy in Proteomics

Zubarev, R., & Mann, M. (2007) · Molecular & Cellular Proteomics

Advanced Proteomics Techniques and ApplicationsMass Spectrometry Techniques and Applications

Cited by 165

Analysis of High Accuracy, Quantitative Proteomics Data in the MaxQB Database

Schaab, C., Geiger, T., Stoehr, G., Cox, J., & Mann, M. (2012) · Molecular & Cellular Proteomics

Advanced Proteomics Techniques and ApplicationsBioinformatics and Genomic Networks

Cited by 164

N ε -Formylation of lysine is a widespread post-translational modification of nuclear proteins occurring at residues involved in regulation of chromatin function

Wiśniewski, J. R., Zougman, A., & Mann, M. (2008) · Nucleic Acids Research

Genomics and Chromatin DynamicsEpigenetics and DNA Methylation

Cited by 163

Multi-Omic Profiling Reveals Dynamics of the Phased Progression of Pluripotency

Yang, P., Humphrey, S. J., Cinghu, S., Pathania, R., Oldfield, A. J., Kumar, D., Perera, D., Yang, J. Y. H., James, D. E., Mann, M., et al. (2018) · Cell Systems

Pluripotent Stem Cells ResearchDevelopmental Biology and Gene Regulation

Cited by 146

Multi-omic Profiling Reveals Dynamics of the Phased Progression of Pluripotency

Yang, P., Humphrey, S. J., Cinghu, S., Pathania, R., Oldfield, A. J., Kumar, D., Perera, D., Yang, J. Y. H., James, D. E., Mann, M., et al. (2019) · Cell Systems

Pluripotent Stem Cells ResearchDevelopmental Biology and Gene Regulation

Cited by 146

Spatial proteomics in three-dimensional intact specimens

Bhatia, H. S., Brunner, A.-D., Öztürk, F., Kapoor, S., Rong, Z., Mai, H., Thielert, M., Ali, M., Al-Maskari, R., Paetzold, J. C., et al. (2022) · Cell

Advanced Proteomics Techniques and ApplicationsMass Spectrometry Techniques and Applications

Cited by 129

The social and structural architecture of the yeast protein interactome

Michaelis, A. C., Brunner, A.-D., Zwiebel, M., Meier, F., Strauss, M. T., Bludau, I., & Mann, M. (2023) · Nature

Bioinformatics and Genomic NetworksAdvanced Proteomics Techniques and Applications

Cited by 119

The social architecture of an in-depth cellular protein interactome

Michaelis, A. C., Brunner, A.-D., Zwiebel, M., Meier, F., Strauss, M. T., Bludau, I., & Mann, M. (2021) · Nature

Bioinformatics and Genomic NetworksAdvanced Proteomics Techniques and Applications

Cited by 119

Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC) Applied to Quantitative Proteomics of Bacillus subtilis

Soufi, B., Kumar, C., Gnad, F., Mann, M., Mijakovic, I., & Macek, B. (2010) · Journal of Proteome Research

Advanced Proteomics Techniques and ApplicationsBacterial Genetics and Biotechnology

Cited by 107

The Proteome of Prostate Cancer Bone Metastasis Reveals Heterogeneity with Prognostic Implications

Iglesias-Gato, D., Thysell, E., Tyanova, S., Crnalic, S., Santos, A., Lima, T. S., Geiger, T., Cox, J., Widmark, A., Bergh, A., et al. (2018) · Clinical Cancer Research

Prostate Cancer Treatment and ResearchAdvanced Proteomics Techniques and Applications

Cited by 106

Hippocampal disruptions of synaptic and astrocyte metabolism are primary events of early amyloid pathology in the 5xFAD mouse model of Alzheimer’s disease

Andersen, J. V., Skotte, N. H., Christensen, S. K., Polli, F. S., Shabani, M., Markussen, K. H., Haukedal, H., Westi, E. W., Diaz-delCastillo, M., Sun, R. C., et al. (2021) · Cell Death & Disease

Alzheimer's disease research and treatmentsNeuroscience and Neuropharmacology Research

Cited by 104

Proteome-Wide Analysis of Disease-Associated SNPs That Show Allele-Specific Transcription Factor Binding

Butter, F., Davison, L., Viturawong, T., Scheibe, M., Vermeulen, M., Todd, J. A., & Mann, M. (2012) · PLoS Genetics

Genetic Associations and EpidemiologyDiabetes and associated disorders

Cited by 91

IKAP: A heuristic framework for inference of kinase activities from Phosphoproteomics data

Mischnik, M., Sacco, F., Cox, J., Schneider, H.-C., Schäfer, M., Hendlich, M., Crowther, D., Mann, M., & Klabunde, T. (2016) · Bioinformatics

Advanced Proteomics Techniques and ApplicationsBioinformatics and Genomic Networks

Cited by 75

Histone monoubiquitination by Clock-Bmal1 complex marks Per1 and Per2 genes for circadian feedback

Tamayo, A. G., Duong, H. A., Robles, M. S., Mann, M., & Weitz, C. J. (2015) · Nature Structural & Molecular Biology

Circadian rhythm and melatoninGenomics and Chromatin Dynamics

Cited by 60