Cellular‐resolution gene expression mapping reveals organization in the head ganglia of the gastropod, Berghia stephanieae

Basic local alignment search tool

Altschul, S. F., Gish, W., Miller, W., Myers, E. W., & Lipman, D. J. (1990) · Journal of Molecular Biology · doi:10.1006/jmbi.1990.9999 · Cited by 98,669 · see citing works

Trimmomatic: a flexible trimmer for Illumina sequence data

Bolger, A. M., Lohse, M., & Usadel, B. (2014) · Bioinformatics · doi:10.1093/bioinformatics/btu170 · Cited by 65,548 · see citing works

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Katoh, K., & Standley, D. M. (2013) · Molecular Biology and Evolution · doi:10.1093/molbev/mst010 · Cited by 46,209 · see citing works

BLAST+: architecture and applications

Camacho, C., Coulouris, G., Avagyan, V., Ma, N., Papadopoulos, J., Bealer, K., & Madden, T. L. (2009) · BMC Bioinformatics · doi:10.1186/1471-2105-10-421 · Cited by 22,074 · see citing works

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Grabherr, M. G., Haas, B. J., Yassour, M., Levin, J. Z., Thompson, D. A., Amit, I., Adiconis, X., Fan, L., Raychowdhury, R., Zeng, Q., et al. (2011) · Nature Biotechnology · doi:10.1038/nbt.1883 · Cited by 20,770 · see citing works

Integrated analysis of multimodal single-cell data

Hao, Y., Hao, S., Andersen-Nissen, E., Mauck, W. M., Zheng, S., Butler, A., Lee, M. J., Wilk, A. J., Darby, C., Zagar, M., et al. (2020) · doi:10.1101/2020.10.12.335331 · Cited by 15,508 · see citing works

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

Price, M. N., Dehal, P. S., & Arkin, A. P. (2010) · PLoS ONE · doi:10.1371/journal.pone.0009490 · Cited by 14,894 · see citing works

Near-optimal probabilistic RNA-seq quantification

Bray, N. L., Pimentel, H., Melsted, P., & Pachter, L. (2016) · Nature Biotechnology · doi:10.1038/nbt.3519 · Cited by 9,723 · see citing works

OrthoFinder: phylogenetic orthology inference for comparative genomics

Emms, D. M., & Kelly, S. (2019) · Genome Biology · doi:10.1186/s13059-019-1832-y · Cited by 7,676 · see citing works

ExPASy: the proteomics server for in-depth protein knowledge and analysis

Gasteiger, E. (2003) · Nucleic Acids Research · doi:10.1093/nar/gkg563 · Cited by 5,602 · see citing works

Genome-wide atlas of gene expression in the adult mouse brain

Lein, E. S., Hawrylycz, M. J., Ao, N., Ayres, M., Bensinger, A., Bernard, A., Boe, A. F., Boguski, M. S., Brockway, K. S., Byrnes, E. J., et al. (2007) · Nature · doi:10.1038/nature05453 · Cited by 5,572 · see citing works

Sensitive protein alignments at tree-of-life scale using DIAMOND

Buchfink, B., Reuter, K., & Drost, H.-G. (2021) · Nature Methods · doi:10.1038/s41592-021-01101-x · Cited by 5,097 · see citing works

MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data

Finak, G., McDavid, A., Yajima, M., Deng, J., Gersuk, V., Shalek, A. K., Slichter, C. K., Miller, H. W., McElrath, M. J., Prlic, M., et al. (2015) · Genome Biology · doi:10.1186/s13059-015-0844-5 · Cited by 3,159 · see citing works

The Sequence Manipulation Suite: JavaScript Programs for Analyzing and Formatting Protein and DNA Sequences

Stothard, P. (2000) · BioTechniques · doi:10.2144/00286ir01 · Cited by 1,785 · see citing works

The snail superfamily of zinc-finger transcription factors

Nieto, M. A. (2002) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm757 · Cited by 1,719 · see citing works

Third-generation <i>in situ</i> hybridization chain reaction: multiplexed, quantitative, sensitive, versatile, robust

Choi, H. M. T., Schwarzkopf, M., Fornace, M. E., Acharya, A., Artavanis, G., Stegmaier, J., Cunha, A., & Pierce, N. A. (2018) · Development · doi:10.1242/dev.165753 · Cited by 1,495 · see citing works

Oases:robustde novoRNA-seq assembly across the dynamic range of expression levels

Schulz, M. H., Zerbino, D. R., Vingron, M., & Birney, E. (2012) · Bioinformatics · doi:10.1093/bioinformatics/bts094 · Cited by 1,423 · see citing works

Glial Fibrillary Acidic Protein: GFAP-Thirty-One Years (1969–2000)

Eng, L. F., Ghirnikar, R. S., & Lee, Y. L. (2000) · Neurochemical Research · doi:10.1023/a:1007677003387 · Cited by 1,368 · see citing works

Clustering trees: a visualization for evaluating clusterings at multiple resolutions

Zappia, L., & Oshlack, A. (2018) · GigaScience · doi:10.1093/gigascience/giy083 · Cited by 1,064 · see citing works

Expression of a Delta homologue in prospective neurons in the chick

Henrique, D., Adam, J., Myat, A., Chitnis, A. B., Lewis, J. H., & Ish‐Horowicz, D. (1995) · Nature · doi:10.1038/375787a0 · Cited by 992 · see citing works

SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads

Xie, Y., Wu, G., Tang, J., Luo, R., Patterson, J., Liu, S., Huang, W., He, G., Gu, S., Li, S., et al. (2014) · Bioinformatics · doi:10.1093/bioinformatics/btu077 · Cited by 979 · see citing works

A Tissue-Mapped Axolotl De Novo Transcriptome Enables Identification of Limb Regeneration Factors

Bryant, D. M., Johnson, K. A., DiTommaso, T., Tickle, T. L., Couger, M. B., Payzin‐Dogru, D., Lee, T. J., Leigh, N. D., Kuo, T., Davis, F. G., et al. (2017) · Cell Reports · doi:10.1016/j.celrep.2016.12.063 · Cited by 958 · see citing works

TransRate: reference-free quality assessment of de novo transcriptome assembliesPreprint

Smith-Unna, R. D., Boursnell, C., Patro, R., Hibberd, J. M., & Kelly, S. L. (2016) · Genome Research · doi:10.1101/gr.196469.115 · Cited by 840 · see citing works

Glial fibrillary acidic protein (GFAP): the major protein of glial intermediate filaments in differentiated astrocytes

Eng, L. F. (1985) · Journal of Neuroimmunology · doi:10.1016/s0165-5728(85)80063-1 · Cited by 737 · see citing works

Primary neurogenesis in Xenopus embryos regulated by a homologue of the Drosophila neurogenic gene Delta

Chitnis, A. B., Henrique, D., Lewis, J. H., Ish‐Horowicz, D., & Kintner, C. R. (1995) · Nature · doi:10.1038/375761a0 · Cited by 675 · see citing works

Six3 , a murine homologue of the sine oculis gene, demarcates the most anterior border of the developing neural plate and is expressed during eye development

Oliver, G. C., Mailhos, A., Wehr, R., Copeland, N. G., Jenkins, N. A., & Gruß, P. (1995) · Development · doi:10.1242/dev.121.12.4045 · Cited by 674 · see citing works

The octopus genome and the evolution of cephalopod neural and morphological novelties

Albertin, C. B., Simakov, O., Mitros, T., Wang, Z. Y., Pungor, J. R., Edsinger, E., Brenner, S., Ragsdale, C. W., & Rokhsar, D. S. (2015) · Nature · doi:10.1038/nature14668 · Cited by 617 · see citing works

Evolution of pallium, hippocampus, and cortical cell types revealed by single-cell transcriptomics in reptiles

Tosches, M. A., Yamawaki, T. M., Naumann, R. K., Jacobi, A. A., Tushev, G., & Laurent, G. (2018) · Science · doi:10.1126/science.aar4237 · Cited by 506 · see citing works

Modular, efficient and constant-memory single-cell RNA-seq preprocessing

Melsted, P., Booeshaghi, A. S., Liu, L., Gao, F., Moses, L., Min, K. H., Beltrame, E. D. V., Hjörleifsson, K. E., Gehring, J., & Pachter, L. S. (2021) · Nature Biotechnology · doi:10.1038/s41587-021-00870-2 · Cited by 478 · see citing works

Transient and restricted expression during mouse embryogenesis of Dll1, a murine gene closely related to Drosophila Delta

Bettenhausen, B., de Angelis, M. H., Simon‐Chazottes, D., Guénet, J., & Gossler, A. (1995) · Development · doi:10.1242/dev.121.8.2407 · Cited by 451 · see citing works

repo encodes a glial-specific homeo domain protein required in the Drosophila nervous system.Preprint

Xiong, W., Okano, H., Patel, N. H., Blendy, J. A., & Montell, C. (1994) · Genes & Development · doi:10.1101/gad.8.8.981 · Cited by 425 · see citing works

'Conserved hypothetical' proteins: prioritization of targets for experimental study

Galperin, M. Y. (2004) · Nucleic Acids Research · doi:10.1093/nar/gkh885 · Cited by 419 · see citing works

<i>Nebulosa</i> recovers single-cell gene expression signals by kernel density estimation

Alquicira-Hernandez, J., & Powell, J. E. (2021) · Bioinformatics · doi:10.1093/bioinformatics/btab003 · Cited by 381 · see citing works

The homeobox gene repo is required for the differentiation and maintenance of glia function in the embryonic nervous system of Drosophila melanogaster

Halter, D., Urban, J., Rickert, C., Ner, S. S., Ito, K., TRAVERS, A. A., & Technau, G. M. (1995) · Development · doi:10.1242/dev.121.2.317 · Cited by 374 · see citing works

Detection and removal of barcode swapping in single-cell RNA-seq data

Griffiths, J. A., Richard, A. C., Bach, K., Lun, A. T. L., & Marioni, J. C. (2018) · Nature Communications · doi:10.1038/s41467-018-05083-x · Cited by 324 · see citing works

Neurotransmitter Corelease: Mechanism and Physiological Role

Hnasko, T. S., & Edwards, R. H. (2012) · Annual Review of Physiology · doi:10.1146/annurev-physiol-020911-153315 · Cited by 284 · cited 1× · see citing works

Erratum: Near-optimal probabilistic RNA-seq quantification

Bray, N., Pimentel, H., Melsted, P., & Pachter, L. S. (2016) · Nature Biotechnology · doi:10.1038/nbt0816-888d · Cited by 284 · see citing works

Notch1 and its ligands Delta-like and Jagged are expressed and active in distinct cell populations in the postnatal mouse brain

Stump, G., Durrer, A., Klein, A.-L., Lütolf, S., Suter, U., & Taylor, V. (2002) · Mechanisms of Development · doi:10.1016/s0925-4773(02)00043-6 · Cited by 248 · see citing works

EnTAP : Bringing faster and smarter functional annotation to non‐model eukaryotic transcriptomes

Hart, A. J., Ginzburg, S., Xu, M., Fisher, C. R., Rahmatpour, N., Mitton, J. B., Paul, R., & Wegrzyn, J. (2019) · Molecular Ecology Resources · doi:10.1111/1755-0998.13106 · Cited by 237 · see citing works

Neurohormones and neuropeptides encoded by the genome of Lottia gigantea, with reference to other mollusks and insects

Veenstra, J. A. (2010) · General and Comparative Endocrinology · doi:10.1016/j.ygcen.2010.02.010 · Cited by 228 · see citing works

The Drosophila homeobox gene optix is capable of inducing ectopic eyes by an eyeless-independent mechanism

Seimiya, M., & Gehring, W. J. (2000) · Development · doi:10.1242/dev.127.9.1879 · Cited by 226 · see citing works

Nitric oxide mediates network oscillations of olfactory interneurons in a terrestrial mollusc

Gelperin, A. (1994) · Nature · doi:10.1038/369061a0 · Cited by 225 · see citing works

GABA plasma membrane transporters, GAT‐1 and GAT‐3, display different distributions in the rat hippocampus

Ribak, C. E., Tong, W. M. Y., & Brecha, N. C. (1996) · The Journal of Comparative Neurology · doi:10.1002/(sici)1096-9861(19960415)367:4 · Cited by 220 · see citing works

Segment number threshold determines juvenile onset of germline cluster expansion in Platynereis dumerilii

Kuehn, E., Clausen, D. S., Null, R. W., Metzger, B. M., Willis, A. D., & Özpolat, B. D. (2021) · Journal of Experimental Zoology Part B Molecular and Developmental Evolution · doi:10.1002/jez.b.23100 · Cited by 196 · see citing works

Behavioral role for nitric oxide in chemosensory activation of feeding in a mollusc

Elphick, M. R., Kemenes, G., Staras, K., & O’Shea, M. (1995) · Journal of Neuroscience · doi:10.1523/jneurosci.15-11-07653.1995 · Cited by 171 · see citing works

Neuronal identity control by terminal selectors in worms, flies, and chordates

Hobert, O., & Kratsios, P. (2019) · Current Opinion in Neurobiology · doi:10.1016/j.conb.2018.12.006 · Cited by 169 · see citing works

Single cell transcriptome atlas of the Drosophila larval brain

Avalos, C. B., Maier, G. L., Bruggmann, R., & Sprecher, S. G. (2019) · eLife · doi:10.7554/elife.50354 · Cited by 153 · see citing works

Expression of two zebrafish homologues of the murine Six3 gene demarcates the initial eye primordia

Seo, H., Drivenes, Ø., Ellingsen, S., & Fjose, A. (1998) · Mechanisms of Development · doi:10.1016/s0925-4773(98)00028-8 · Cited by 145 · see citing works

Scratch regulates neuronal migration onset via an epithelial-mesenchymal transition–like mechanism

Itoh, Y., Moriyama, Y., Hasegawa, T., Endo, T. A., Toyoda, T., & Gotoh, Y. (2013) · Nature Neuroscience · doi:10.1038/nn.3336 · Cited by 142 · see citing works

Astrocytes interact intimately with degenerating motor neurons in mouse amyotrophic lateral sclerosis (ALS)

Levine, J. B., Kong, J., Nadler, M., & Xu, Z. (1999) · Glia · doi:10.1002/(sici)1098-1136(199912)28:3 · Cited by 141 · see citing works

Formation of neuroblasts in the embryonic central nervous system of <i>Drosophila melanogaster</i> is controlled by <i>SoxNeuro</i>

Buescher, M., Hing, F. S., & Chia, W. (2002) · Development · doi:10.1242/dev.129.18.4193 · Cited by 133 · see citing works

Central pattern generator mediating swimming in Tritonia. I. Identification and synaptic interactions.

Getting, P. A., Lennard, P. R., & Hume, R. I. (1980) · Journal of Neurophysiology · doi:10.1152/jn.1980.44.1.151 · Cited by 127 · see citing works

Synaptic and peptidergic connectome of a neurosecretory center in the annelid brain

Williams, E. A., Verasztó, C., Jasek, S., Conzelmann, M., Shahidi, R., Bauknecht, P., Mirabeau, O., & Jékely, G. (2017) · eLife · doi:10.7554/elife.26349 · Cited by 119 · see citing works

Afferent neurons mediating escape swimming of the marine mollusc,Tritonia

Getting, P. A. (1976) · Journal of Comparative Physiology A · doi:10.1007/bf00659144 · Cited by 118 · see citing works

Expanded retina territory by midbrain transformation upon overexpression of Six6 ( Optx2 ) in Xenopus embryos

Bernier, G., Panitz, F., Zhou, X., Hollemann, T., Gruß, P., & Pieler, T. (2000) · Mechanisms of Development · doi:10.1016/s0925-4773(00)00271-9 · Cited by 112 · see citing works

The increasing complexity of the Snail gene superfamily in metazoan evolution

Manzanares, M. (2001) · Trends in Genetics · doi:10.1016/s0168-9525(01)02232-6 · Cited by 110 · see citing works

The Groucho-like transcription factor UNC-37 functions with the neural specificity gene unc-4 to govern motor neuron identity in C. elegans

Pflugrad, A., Meir, J. Y., Barnes, T. M., & Miller, D. M. (1997) · Development · doi:10.1242/dev.124.9.1699 · Cited by 108 · see citing works

Generating publication ready visualizations for Single Cell transcriptomics using SCpubrPreprint

Blanco-Carmona, E. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.02.28.482303 · Cited by 107 · see citing works

Single-Cell RNA-Sequencing: Assessment of Differential Expression Analysis Methods

Dal Molin, A., Baruzzo, G., & Di Camillo, B. (2017) · Frontiers in Genetics · doi:10.3389/fgene.2017.00062 · Cited by 107 · see citing works

The Oyster River Protocol: a multi-assembler and kmer approach for de novo transcriptome assembly

MacManes, M. D. (2018) · PeerJ · doi:10.7717/peerj.5428 · Cited by 103 · see citing works

Modulatory role for the serotonergic cerebral giant cells in the feeding system of the snail, Lymnaea. I. Fine wire recording in the intact animal and pharmacology

Yeoman, M. S., Pieneman, A. W., Ferguson, G. P., Maat, A. T., & Benjamin, P. R. (1994) · Journal of Neurophysiology · doi:10.1152/jn.1994.72.3.1357 · Cited by 101 · see citing works

A versatile depigmentation, clearing, and labeling method for exploring nervous system diversity

Pende, M., Vadiwala, K., Schmidbaur, H., Stockinger, A. W., Murawala, P., Saghafi, S., Dekens, M. P. S., Becker, K., Revilla‐i‐Domingo, R., Papadopoulos, S., et al. (2020) · Science Advances · doi:10.1126/sciadv.aba0365 · Cited by 100 · see citing works

Novel transcriptome assembly and improved annotation of the whiteleg shrimp (Litopenaeus vannamei), a dominant crustacean in global seafood mariculture

Ghaffari, N., Sánchez‐Flores, A., Doan, R. N., García‐Orozco, K. D., Chen, P. L., Ochoa‐Leyva, A., López-Zavala, A. A., Carrasco, J. S., Hong, C., Brieba, L. G., et al. (2014) · Scientific Reports · doi:10.1038/srep07081 · Cited by 99 · see citing works

Whole-organism cellular gene-expression atlas reveals conserved cell types in the ventral nerve cord of Platynereis dumerilii

Vergara, H. M., Bertucci, P. Y., Hantz, P., Tosches, M. A., Achim, K., Vopálenský, P., & Arendt, D. (2017) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1610602114 · Cited by 84 · see citing works

Single cell transcriptomics in neuroscience: cell classification and beyond

Tasic, B. (2018) · Current Opinion in Neurobiology · doi:10.1016/j.conb.2018.04.021 · Cited by 83 · see citing works

Soluble Guanylyl Cyclase: The Nitric Oxide Receptor

Martin, E., Berka, V., Tsai, A., & Murad, F. (2005) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/s0076-6879(05)96040-0 · Cited by 81 · see citing works

Selection of differentiating cells by different levels of delta-like 1 among neural precursor cells in the developing mouse telencephalon

Kawaguchi, D., Yoshimatsu, T., Hozumi, K., & Gotoh, Y. (2008) · Development · doi:10.1242/dev.024570 · Cited by 81 · see citing works

Neurogenesis in Aplysia californica resembles nervous system formation in vertebrates

Jacob, M. (1984) · Journal of Neuroscience · doi:10.1523/jneurosci.04-05-01225.1984 · Cited by 80 · see citing works

Homology and homoplasy of swimming behaviors and neural circuits in the Nudipleura (Mollusca, Gastropoda, Opisthobranchia)

Newcomb, J. M., Sakurai, A., Lillvis, J. L., Gunaratne, C. A., & Katz, P. S. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1201877109 · Cited by 79 · see citing works

Localization of endothelial-monocyte-activating polypeptide II (EMAP II), a novel proinflammatory cytokine, to lesions of experimental autoimmune encephalomyelitis, neuritis and uveitis: Expression by monocytes and activated microglial cells

Schluesener, H. J., Seid, K., Zhao, Y., & Meyermann, R. (1997) · Glia · doi:10.1002/(sici)1098-1136(199708)20:4 · Cited by 79 · see citing works

Central Pattern Generator for Escape Swimming in the Notaspid Sea SlugPleurobranchaea californica

Jing, J., & Gillette, R. (1999) · Journal of Neurophysiology · doi:10.1152/jn.1999.81.2.654 · Cited by 77 · see citing works

A safer, urea-based in situ hybridization method improves detection of gene expression in diverse animal species

Sinigaglia, C., Thiel, D. J., Hejnol, A., Houliston, E., & Leclère, L. (2017) · Developmental Biology · doi:10.1016/j.ydbio.2017.11.015 · Cited by 77 · see citing works

Somatotopic organization and functional properties of mechanosensory neurons expressing sensorin‐A mRNA in Aplysia californica

Walters, E. T., Bodnárová, M., Billy, A. J., Dulin, M., Díaz‐Ríos, M., Miller, M. W., & Moroz, L. L. (2004) · The Journal of Comparative Neurology · doi:10.1002/cne.20042 · Cited by 76 · see citing works

Cell type diversity in a developing octopus brain

Styfhals, R., Zolotarov, G., Hulselmans, G. J., Spanier, K. I., Poovathingal, S. K., Elagoz, A. M., Winter, S. D., Deryckere, A., Rajewsky, N., Ponte, G., et al. (2022) · Nature Communications · doi:10.1038/s41467-022-35198-1 · Cited by 76 · see citing works

Mammalian Scratch: A neural-specific Snail family transcriptional repressor

Nakakura, E. K., Watkins, D. N., Schuebel, K. E., Sriuranpong, V., Borges, M. W., Nelkin, B. D., & Ball, D. W. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.051014098 · Cited by 76 · see citing works

Evolutionary aspects in intermediate filament proteins

Peter, A., & Stick, R. (2015) · Current Opinion in Cell Biology · doi:10.1016/j.ceb.2014.12.009 · Cited by 74 · see citing works

Characterization of ATP release from cultures enriched in cholinergic amacrine-like neurons

Santos, P. F., Caramelo, O. L., Carvalho, A. P., & Duarte, C. B. (1999) · Journal of Neurobiology · doi:10.1002/(sici)1097-4695(19991115)41:3 · Cited by 74 · see citing works

Functional unknomics: Systematic screening of conserved genes of unknown function

Rocha, J. J., Jayaram, S. A., Stevens, T. J., Muschalik, N., Shah, R. D., Emran, S., Robles, C., Freeman, M., & Munro, S. (2023) · PLOS Biology · doi:10.1371/journal.pbio.3002222 · Cited by 70 · cited 1× · see citing works

Comparative analysis of Six3 and Six6 distribution in the developing and adult mouse brain

Conte, I., Morcillo, J., & Bovolenta, P. (2005) · Developmental Dynamics · doi:10.1002/dvdy.20463 · Cited by 68 · see citing works

Identified Neurons and Cellular Homologies

Croll, R. P. (1987) · Springer eBooks · doi:10.1007/978-1-4613-1955-9_4 · Cited by 66 · see citing works

Subnuclear localization of FOS‐like immunoreactivity in the parabrachial nucleus after orofacial nociceptive stimulation of the awake rat

Hermanson, O., & Blomqvist, A. (1997) · The Journal of comparative neurology · doi:10.1002/(sici)1096-9861(19971013)387:1 · Cited by 61 · see citing works

Super deduper, fast PCR duplicate detection in fastq files

Petersen, K. R., Streett, D. A., Gerritsen, A. T., Hunter, S. S., & Settles, M. L. (2015) · ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM-BCB) · doi:10.1145/2808719.2811568 · Cited by 60 · see citing works

Neural regeneration in gastropod molluscs

Moffett, S. B. (1995) · Progress in Neurobiology · doi:10.1016/0301-0082(95)80014-y · Cited by 57 · see citing works

Positive feedback loop between Sox2 and Sox6 inhibits neuronal differentiation in the developing central nervous system

Lee, K. E., Seo, J., Shin, J., Ji, E. H., Roh, J., Kim, J. Y., Sun, W., Muhr, J., Lee, S., & Kim, J. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1308758111 · Cited by 56 · see citing works

Localization of putative nitrergic neurons in peripheral chemosensory areas and the central nervous system ofAplysia californica

Moroz, L. L. (2006) · The Journal of Comparative Neurology · doi:10.1002/cne.20842 · Cited by 56 · see citing works

Cell types and molecular architecture of the Octopus bimaculoides visual system

Songco-Casey, J. O., Coffing, G. C., Piscopo, D. M., Pungor, J. R., Kern, A. D., Miller, A. C., & Niell, C. M. (2022) · Current Biology · doi:10.1016/j.cub.2022.10.015 · Cited by 56 · see citing works

Interaction of Drosophila melanogaster Prohormone Convertase 2 and 7B2

Hwang, J. R., Siekhaus, D. E., Fuller, R. S., Taghert, P. H., & Lindberg, I. (2000) · Journal of Biological Chemistry · doi:10.1074/jbc.m000032200 · Cited by 56 · see citing works

Comparative mapping of GABA‐immunoreactive neurons in the central nervous systems of nudibranch molluscs

Gunaratne, C. A., Sakurai, A., & Katz, P. S. (2013) · The Journal of Comparative Neurology · doi:10.1002/cne.23446 · Cited by 55 · see citing works

Ancient origin of somatic and visceral neurons

Nomaksteinsky, M., Kassabov, S. R., Chettouh, Z., Stoeklé, H., Bonnaud, L., Fortin, G., Kandel, E. R., & Brunet, J. (2013) · BMC Biology · doi:10.1186/1741-7007-11-53 · Cited by 55 · see citing works

Brain-specific lipoprotein receptors interact with astrocyte derived apolipoprotein and mediate neuron-glia lipid shuttling

Yin, J., Spillman, E., Cheng, E. S., Short, J., Chen, Y., Lei, J., Gibbs, M., Rosenthal, J., Sheng, C., Chen, Y. X., et al. (2021) · Nature Communications · doi:10.1038/s41467-021-22751-7 · Cited by 53 · see citing works

Neuroendocrine Protein 7B2 Is Essential for Proteolytic Conversion and Activation of Proprotein Convertase 2 in Vivo

Seidel, B., Dong, W., Savaria, D., Zheng, M. H., Pintar, J. E., & Day, R. W. (1998) · DNA and Cell Biology · doi:10.1089/dna.1998.17.1017 · Cited by 53 · see citing works

Parallel Evolution of Serotonergic Neuromodulation Underlies Independent Evolution of Rhythmic Motor Behavior

Lillvis, J. L., & Katz, P. S. (2013) · Journal of Neuroscience · doi:10.1523/jneurosci.4196-12.2013 · Cited by 49 · see citing works

A single-cell atlas of the bobtail squid visual and nervous system highlights molecular principles of convergent evolution

Gavriouchkina, D., Tan, Y., Parey, E., Ziadi‐Künzli, F., Hasegawa, Y., Piovani, L., Zhang, L., Sugimoto, C., Luscombe, N. M., Marlétaz, F., et al. (2025) · Nature Ecology & Evolution · doi:10.1038/s41559-025-02720-9 · Cited by 49 · see citing works

Optix defines a neuroepithelial compartment in the optic lobe of the Drosophila brain

Gold, K. S., & Brand, A. H. (2014) · Neural Development · doi:10.1186/1749-8104-9-18 · Cited by 49 · see citing works

Artificial Synaptic Rewiring Demonstrates that Distinct Neural Circuit Configurations Underlie Homologous Behaviors

Sakurai, A., & Katz, P. S. (2017) · Current Biology · doi:10.1016/j.cub.2017.05.016 · Cited by 48 · see citing works

Comparative mapping of serotonin‐immunoreactive neurons in the central nervous systems of nudibranch molluscs

Newcomb, J. M., Fickbohm, D. J., & Katz, P. S. (2006) · The Journal of Comparative Neurology · doi:10.1002/cne.21111 · Cited by 48 · see citing works

Catecholamine‐containing cells in the central nervous system and periphery of Aplysia californica

Croll, R. P. (2001) · The Journal of Comparative Neurology · doi:10.1002/cne.1399 · Cited by 47 · see citing works

Peripheral sensory cells in the cephalic sensory organs of Lymnaea stagnalis

Wyeth, R. C., & Croll, R. P. (2011) · The Journal of Comparative Neurology · doi:10.1002/cne.22607 · Cited by 47 · see citing works

Cerebrin prohormone processing, distribution and action in Aplysia californica

Li, L., Floyd, P. D., Rubakhin, S. S., Romanova, E. V., Jing, J., Alexeeva, V., Dembrow, N. C., Weiss, K. R., Vilim, F. S., & Sweedler, J. V. (2001) · Journal of Neurochemistry · doi:10.1046/j.1471-4159.2001.00360.x · Cited by 44 · see citing works

A Neuropeptide Precursor Expressed in Aplysia Neuron L5

Malladi, S., Fisher, J. M., & Scheller, R. H. (1986) · DNA · doi:10.1089/dna.1986.5.203 · Cited by 43 · see citing works

Nemertean, Brachiopod, and Phoronid Neuropeptidomics Reveals Ancestral Spiralian Signaling Systems

Thiel, D. J., Yáñez-Guerra, L. A., Franz‐Wachtel, M., Hejnol, A., & Jékely, G. (2021) · Molecular Biology and Evolution · doi:10.1093/molbev/msab211 · Cited by 42 · see citing works

LMO4 functions as a co-activator of neurogenin 2 in the developing cortex

Asprer, J. S. T., Lee, B., Wu, C., Vadakkan, T. J., Dickinson, M. E., Lu, H., & Lee, S. (2011) · Development · doi:10.1242/dev.061879 · Cited by 42 · see citing works

Functional neuroanatomy of the rhinophore of Aplysia punctata

Wertz, A., Rößler, W., Obermayer, M., & Bickmeyer, U. (2006) · Frontiers in Zoology · doi:10.1186/1742-9994-3-6 · Cited by 42 · see citing works

Extensive conservation of the proneuropeptide and peptide prohormone complement in mollusks

de Oliveira, A. L., Calcino, A., & Wanninger, A. (2019) · Scientific Reports · doi:10.1038/s41598-019-40949-0 · Cited by 36 · see citing works

lin-12 Notch functions in the adult nervous system of C. elegans

Chao, M. Y., Larkins‐Ford, J., Tucey, T., & Hart, A. C. (2005) · BMC Neuroscience · doi:10.1186/1471-2202-6-45 · Cited by 35 · see citing works

Optimization of Whole Mount RNA Multiplexed in situ Hybridization Chain Reaction With Immunohistochemistry, Clearing and Imaging to Visualize Octopus Embryonic Neurogenesis

Elagoz, A. M., Styfhals, R., Maccuro, S., Masin, L., Moons, L., & Seuntjens, E. (2022) · Frontiers in Physiology · doi:10.3389/fphys.2022.882413 · Cited by 35 · see citing works

SoxD genes are required for adult neural stem cell activation

Li, L., Medina-Menéndez, C., García‐Corzo, L., Córdoba-Beldad, C. M., Quiroga, A. C., Barca, E. C., Zinchuk, V., Muñoz-López, S., Rodríguez‐Martín, P., Ciorraga, M., et al. (2022) · Cell Reports · doi:10.1016/j.celrep.2022.110313 · Cited by 34 · see citing works

Cholinergic features of photoreceptor synapses in Hermissenda

Heldman, E., Grossman, Y. R., Jerussi, T. P., & Alkon, D. L. (1979) · Journal of Neurophysiology · doi:10.1152/jn.1979.42.1.153 · Cited by 32 · see citing works

�ber Bau und Funktion der Nudibranchier-Rhinophoren

STORCH, V. N., & WELSCH, U. N. (1969) · Cell and Tissue Research · doi:10.1007/bf00332801 · Cited by 31 · see citing works

Neurochemical and Neuroanatomical Identification of Central Pattern Generator Neuron Homologues in Nudipleura Molluscs

Lillvis, J. L., Gunaratne, C. A., & Katz, P. S. (2012) · PLoS ONE · doi:10.1371/journal.pone.0031737 · Cited by 28 · see citing works

The importance of identified neurons in gastropod molluscs to neuroscience

Katz, P. S., & Quinlan, P. D. (2018) · Current Opinion in Neurobiology · doi:10.1016/j.conb.2018.10.009 · Cited by 28 · see citing works

Unc-4 acts to promote neuronal identity and development of the take-off circuit in the Drosophila CNS

Lacin, H., Williamson, W. R., Card, G. M., Skeath, J. B., & Truman, J. W. (2020) · eLife · doi:10.7554/elife.55007 · Cited by 26 · see citing works

Identifiable nitrergic neurons in the central nervous system of the nudibranch Melibe leonina localized with NADPH‐diaphorase histochemistry and nitric oxide synthase immunoreactivity

Newcomb, J. M., & Watson, W. H. (2001) · The Journal of Comparative Neurology · doi:10.1002/cne.1270 · Cited by 23 · see citing works

Quantitation of Contacts Among Sensory, Motor, and Serotonergic Neurons in the Pedal Ganglion of AplysiaPreprint

Zhang, H., Wainwright, M. L., Byrne, J. H., & Cleary, L. J. (2003) · Learning & Memory · doi:10.1101/lm.63903 · Cited by 21 · see citing works

Nitric Oxide Synthase Imunolabeling in the Molluscan CNS and Peripheral Tissues

Hurst, W. J., Moroz, L. L., Gillette, M. U., & Gillette, R. (1999) · Biochemical and Biophysical Research Communications · doi:10.1006/bbrc.1999.1247 · Cited by 20 · see citing works

Distribution of glial cells in the central nervous system of the pulmonate snail Megalobulimus oblongus identified by means of a glial fibrillary acidic protein marker

dos Santos, P., Gehlen, G., Faccioni-Heuser, M. C., Zancan, D. M., & Achaval, M. (2002) · Acta Zoologica · doi:10.1046/j.1463-6395.2002.00126.x · Cited by 18 · see citing works

Pan-neuronal mRNA expression of the secretory polypeptide 7B2

Marcinkiewicz, M. M., Touraine, P. A., & Chrétien, M. (1994) · Neuroscience Letters · doi:10.1016/0304-3940(94)90052-3 · Cited by 18 · see citing works

THE MULTIPLE SENSORY ACTIVITIES OF THE SO-CALLED RHINOPHORE OF NUDIBRANCHS

Arey, L. B. (1918) · American Journal of Physiology-Legacy Content · doi:10.1152/ajplegacy.1918.46.5.526 · Cited by 18 · see citing works

A chromosome-level genome for the nudibranch gastropod Berghia stephanieae helps parse clade-specific gene expression in novel and conserved phenotypes

Goodheart, J. A., Rio, R. A., Taraporevala, N. F., Fiorenza, R. A., Barnes, S. R., Morrill, K., Jacob, M. A. C., Whitesel, C., Masterson, P., Batzel, G. O., et al. (2024) · BMC Biology · doi:10.1186/s12915-024-01814-3 · Cited by 15 · see citing works

Pigment-dispersing hormone-like immunoreactive neurons in the central nervous system of the gastropods, Helix pomatia and Lymnaea stagnalis

Elekes, K., & N�ssel, D. (1999) · Cell and Tissue Research · doi:10.1007/s004410051240 · Cited by 14 · see citing works

GABA-Induced Synaptic Facilitation at Type B to A Photoreceptor Connections in Hermissenda

Schultz, L. M., & Clark, G. A. (1997) · Brain Research Bulletin · doi:10.1016/s0361-9230(96)00325-5 · Cited by 13 · see citing works

Delta expression in post‐mitotic neurons identifies distinct subsets of adult‐specific lineages in Drosophila

Cornbrooks, C. J., Bland, C. E., Williams, D. W., Truman, J. W., & Rand, M. D. (2006) · Developmental Neurobiology · doi:10.1002/dneu.20308 · Cited by 10 · see citing works

Comparative Mapping of GABA‐Immunoreactive Neurons in the Buccal Ganglia of Nudipleura Molluscs

Gunaratne, C. A., & Katz, P. S. (2015) · The Journal of Comparative Neurology · doi:10.1002/cne.23895 · Cited by 8 · see citing works

Evidence That the Swim Afferent Neurons ofTritonia diomedeaAre Glutamatergic

Megalou, E. V., Brandon, C. J., & Frost, W. N. (2009) · Biological Bulletin · doi:10.1086/bblv216n2p103 · Cited by 8 · see citing works

Immunohistochemical demonstration of cholinergic structures in central ganglia of the slug (Limax maximus, Limax valentianus)

D’Este, L., Casini, A., Kimura, S., Bellier, J., Ito, E., Kimura, H., & RENDA, T. G. (2011) · Neurochemistry International · doi:10.1016/j.neuint.2011.02.002 · Cited by 8 · see citing works

Accelerated clearing and molecular labeling of biological tissues using magnetohydrodynamic force

Dwyer, J., Ramirez, M. D., Katz, P. S., Karlstrom, R. O., & Bergan, J. F. (2021) · Scientific Reports · doi:10.1038/s41598-021-95692-2 · Cited by 7 · see citing works

Lifelong neurogenesis in the cerebral ganglion of the Chinese mud snail,Cipangopaludina chinensis

Swart, C. C., Wattenberger, A., Hackett, A. L., & Isaman, D. L. (2017) · Brain and Behavior · doi:10.1002/brb3.652 · Cited by 4 · see citing works

Distribution and physiological effect of enterin neuropeptides in the olfactory centers of the terrestrial slug Limax

Matsuo, R., Kobayashi, S., Furuta, A., Osugi, T., Takahashi, T., Satake, H., & Matsuo, Y. (2020) · Journal of Comparative Physiology A · doi:10.1007/s00359-020-01400-2 · Cited by 4 · see citing works

A chromosome-level genome for the nudibranch gastropod Berghia stephanieae helps parse clade-specific gene expression in novel and conserved phenotypesPreprint

Goodheart, J. A., Rio, R. A., Taraporevala, N. F., Fiorenza, R. A., Barnes, S. R., Morrill, K., Jacob, M. A. C., Whitesel, C., Masterson, P., Batzel, G. O., et al. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.08.04.552006 · Cited by 3 · see citing works

Identifiable Neurons in Invertebrates: From Invariant Cells to Dynamic Systems

(2000) · KARGER eBooks · doi:10.1159/isbn.978-3-318-00634-6 · Cited by 3 · see citing works

Dopaminergic Central Neurons and Peripheral Sensory Systems in Pteropod and Nudibranch Molluscs

Norekian, T. P., & Moroz, L. L. (2025) · The Journal of Comparative Neurology · doi:10.1002/cne.70054 · Cited by 5 · see citing works

The legacies of A. O. Dennis Willows and Peter A. Getting: neuroscience research using Tritonia

Frost, W. N., & Katz, P. S. (2024) · Journal of Neurophysiology · doi:10.1152/jn.00318.2024 · Cited by 2 · see citing works

Total synthesis and structural characterization of a novel protein scaffold from the snail Biomphalaria glabrata

Melnyk, O., Caby, S., Vigouroux, A., Demanche, C., Desmet, R., Sénéchal, M., Snella, B., Mougel, A., Boidin‐Wichlacz, C., Parmentier, A., et al. (2026) · Protein Science · doi:10.1002/pro.70745 · Cited by 1 · see citing works

Functional mapping of the molluscan brain guided by synchrotron X-ray tomography

Crossley, M., Simon, A., Marathe, S., Rau, C., Roth, A., Marra, V., & Staras, K. (2025) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2422706122 · Cited by 1 · see citing works

Egg-laying hormone expression in identified neurons across developmental stages and reproductive states of the nudibranch Berghia stephanieaePreprint

Tait, C. C., Ramirez, M. D., & Katz, P. S. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.12.21.572887 · Cited by 1 · see citing works

Circuits and the single neuron

Katz, P. S. (2024) · Journal of Neurophysiology · doi:10.1152/jn.00312.2024 · Cited by 1 · see citing works

Experimental approaches to hormones and behavior: Invertebrates

Fahrbach, S. E. (2024) · Elsevier eBooks · doi:10.1016/b978-0-443-29068-8.00064-7

The monoaminergic system of Mytilus galloprovincialis : possible developmental functions and sensitivity to emerging contaminants

Risso, B. (2024) · theses.fr (ABES) · doi:10.70675/94595796z0ca5z4767zb186z6fc1b43e8d5d

MolluscaGenes: A Transcriptomic Database for the MolluscaPreprint

Pérez‐Moreno, J. L., & Katz, P. S. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.05.05.723003

The monoaminergic system in a bivalve larva: temporal deployment and spatial organizationPreprint

Risso, B., Blahuta, J., Besnardeau, L., Balbi, T., Dumollard, R., Canesi, L., & Miglioli, A. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.08.17.745212

Studies on High-Throughput Single-Neuron RNA Sequencing and Circadian Rhythms in the Nudibranch, Berghia stephanieae

Bui, T. (2021) · ScholarWorks@UMassAmherst (University of Massachusetts Amherst) · doi:10.7275/21103708 · Cited by 1 · see citing works

The importance of identified neurons in gastropod molluscs to neuroscience

Katz, P. S., & Quinlan, P. D. (2018) · Current Opinion in Neurobiology · doi:10.1016/j.conb.2018.10.009 · Cited by 28 · see citing works

Comparative mapping of GABA‐immunoreactive neurons in the central nervous systems of nudibranch molluscs

Gunaratne, C. A., Sakurai, A., & Katz, P. S. (2013) · The Journal of Comparative Neurology · doi:10.1002/cne.23446 · Cited by 55 · see citing works

Comparative Mapping of GABA‐Immunoreactive Neurons in the Buccal Ganglia of Nudipleura Molluscs

Gunaratne, C. A., & Katz, P. S. (2015) · The Journal of Comparative Neurology · doi:10.1002/cne.23895 · Cited by 8 · see citing works

Using In situ Hybridization Chain Reaction to Investigate Tissues and Cell Types in the Nudibranch Berghia stephanieae

Fiorenza, R. A. (2023) · eScholarship (California Digital Library)