Definitive endoderm of the mouse embryo: Formation, cell fates, and morphogenetic function
Abstract
The endoderm is one of the primary germ layers but, in comparison to ectoderm and mesoderm, has received less attention. The definitive endoderm forms during gastrulation and replaces the extraembryonic visceral endoderm. It participates in the complex morphogenesis of the gut tube and contributes to the associated visceral organs. This review highlights the role of the definitive endoderm as a source of patterning cues for the morphogenesis of other germ‐layer tissues, such as the anterior neurectoderm and the pharyngeal region, and also emphasizes the intricate patterning that the endoderm itself undergoes enabling the acquisition of regionalized cell fates. Developmental Dynamics 235:2315–2329, 2006. © 2006 Wiley‐Liss, Inc.
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Pyy's early regionalized expression within definitive endoderm reflects an early specification of cell fate along both the anterior-posterior and lateral-medial axis of the embryonic gut.
“Its early regionalized expression within DE reflects an early specification of cell fate along both the anterior-posterior and lateral-medial axis of the embryonic gut [6,45].”
From A systematic screen for genes expressed in definitive endoderm by Serial Analysis of Gene Expression (SAGE) (2007) · cites this paper as [6]
Group 2 included genes that were expressed in the definitive endoderm and yolk sac endoderm, which support the functional similarity between these two lineages.
“Group 2 included genes that were expressed in the definitive endoderm and yolk sac endoderm, which support the functional similarity between these two lineages [6].”
From A systematic screen for genes expressed in definitive endoderm by Serial Analysis of Gene Expression (SAGE) (2007) · cites this paper as [6]
Cites
A genomic regulatory network for development
Davidson, E. H., Rast, J. P., Oliveri, P., Ransick, A., Calestani, C., Yuh, C.-H., Minokawa, T., Amore, G., Hinman, V., Arenas-Mena, C., et al. (2002) · Science · doi:10.1126/science.1069883 · Cited by 1,567 · see citing works
GATA4 transcription factor is required for ventral morphogenesis and heart tube formation.Preprint
Kuo, C. T., Morrisey, E. E., Anandappa, R. T., Sigrist, K. S., Lu, M. M., Parmacek, M. S., Soudais, C., & Leiden, J. M. (1997) · Genes & Development · doi:10.1101/gad.11.8.1048 · Cited by 1,029 · see citing works
HNF-3β is essential for node and notochord formation in mouse development
Ang, S., & Rossant, J. (1994) · Cell · doi:10.1016/0092-8674(94)90522-3 · Cited by 981 · see citing works
Clonal analysis of epiblast fate during germ layer formation in the mouse embryo
Lawson, K. A., Meneses, J. J., & Pedersen, R. A. (1991) · Development · doi:10.1242/dev.113.3.891 · Cited by 881 · see citing works
The Zinc Finger-containing Transcription Factors GATA-4, -5, and -6
Molkentin, J. D. (2000) · Journal of Biological Chemistry · doi:10.1074/jbc.r000029200 · Cited by 880 · see citing works
Hedgehog signals regulate multiple aspects of gastrointestinal development
Ramalho‐Santos, M., Melton, D. A., & McMahon, A. P. (2000) · Development · doi:10.1242/dev.127.12.2763 · Cited by 846 · see citing works
Ubiquitin-mediated proteolysis: biological regulation via destruction
Ciechanover, A. J., Orian, A., & Schwartz, A. L. (2000) · BioEssays · doi:10.1002/(sici)1521-1878(200005)22:5 · Cited by 845 · see citing works
Development of definitive endoderm from embryonic stem cells in culture
Kubo, A., Shinozaki, K., Shannon, J. M., Kouskoff, V., Kennedy, M., Woo, S. L. C., Fehling, H. J., & Keller, G. M. (2004) · Development · doi:10.1242/dev.01044 · Cited by 830 · see citing works
Peters, H., Neubüser, A., Kratochwil, K., & Balling, R. (1998) · Genes & Development · doi:10.1101/gad.12.17.2735 · Cited by 829 · see citing works
Requirement for LIml in head-organizer function
Shawlot, W., & Behringer, R. R. (1995) · Nature · doi:10.1038/374425a0 · Cited by 805 · see citing works
Weinstein, D. C., Altaba, A. R. I., Chen, W. S., Hoodless, P. A., Prezioso, V. R., Jessell, T. M., & Darnell, J. E., Jr. (1994) · Cell · doi:10.1016/0092-8674(94)90523-1 · Cited by 783 · see citing works
Depletion of definitive gut endoderm in <i>Sox17</i> -null mutant mice
Kanai-Azuma, M., Kanai, Y., Gad, J. M., Tajima, Y., Taya, C., Kurohmaru, M., Sanai, Y., Yonekawa, H., Yazaki, K., Tam, P. P. L., et al. (2002) · Development · doi:10.1242/dev.129.10.2367 · Cited by 704 · see citing works
Self-citationDickkopf1 Is Required for Embryonic Head Induction and Limb Morphogenesis in the Mouse
Mukhopadhyay, M., Shtrom, S., Rodrı́guez-Esteban, C., Chen, L., Tsukui, T., Gomer, L., Dorward, D. W., Glinka, A., Grinberg, A., Huang, S.-P., et al. (2001) · Developmental Cell · doi:10.1016/s1534-5807(01)00041-7 · Cited by 634 · see citing works
Nodal is a novel TGF-β-like gene expressed in the mouse node during gastrulation
Zhou, X., Sasaki, H., Lowe, L. A., Hogan, B. L. M., & Kuehn, M. R. (1993) · Nature · doi:10.1038/361543a0 · Cited by 615 · see citing works
Vertebrate Endoderm Development
Wells, J. M., & Melton, D. A. (1999) · Annual Review of Cell and Developmental Biology · doi:10.1146/annurev.cellbio.15.1.393 · Cited by 522 · see citing works
Ang, S., Jin, O., Rhinn, M., Daigle, N., Stevenson, L., & Rossant, J. (1996) · Development · doi:10.1242/dev.122.1.243 · Cited by 501 · see citing works
Cripto is required for correct orientation of the anterior–posterior axis in the mouse embryo
Ding, J., Yang, L., Yan, Y., Chen, A. Y.-C., Desai, N., Wynshaw-Boris, A. J., & Shen, M. M. (1998) · Nature · doi:10.1038/27215 · Cited by 480 · see citing works
Martı́nez-Barberá, J. P., Clements, M., Thomas, P. Q., Rodríguez, T. A., Meloy, D., Kioussis, D., & Beddington, R. S. P. (2000) · Development · doi:10.1242/dev.127.11.2433 · Cited by 471 · see citing works
Induction and monitoring of definitive and visceral endoderm differentiation of mouse ES cells
Yasunaga, M., Tada, S., Torikai-Nishikawa, S., Nakano, Y., Okada, M., Jakt, L. M., Nishikawa, S., Chiba, T., Era, T., & Nishikawa, S.-I. (2005) · Nature Biotechnology · doi:10.1038/nbt1167 · Cited by 471 · see citing works
Belo, J. A., Bouwmeester, T., Leyns, L., Kertesz, N., Gallo, M., Follettie, M., & De Robertis, E. M. (1997) · Mechanisms of Development · doi:10.1016/s0925-4773(97)00125-1 · Cited by 460 · see citing works
Tada, S., Era, T., Furusawa, C., Sakurai, H., Nishikawa, S., Kinoshita, M., Nakao, K., Chiba, T., & Nishikawa, S.-I. (2005) · Development · doi:10.1242/dev.02005 · Cited by 456 · see citing works
Sonic hedgehog directs specialised mesoderm differentiation in the intestine and pancreas
Apelqvist, Å., Ahlgren, U., & Edlund, H. (1997) · Current Biology · doi:10.1016/s0960-9822(06)00340-x · Cited by 445 · see citing works
The role of Hoxa-3 in mouse thymus and thyroid development
Manley, N. R., & Capecchi, M. R. (1995) · Development · doi:10.1242/dev.121.7.1989 · Cited by 428 · see citing works
Beck, F., Erler, T., Russell, A., & James, R. (1995) · Developmental Dynamics · doi:10.1002/aja.1002040302 · Cited by 405 · see citing works
Duncan, S. A., Manova, K., Chen, W. S., Hoodless, P. A., Weinstein, D. C., Bachvarova, R. F., & Darnell, J. E., Jr. (1994) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.91.16.7598 · Cited by 366 · see citing works
Early mouse endoderm is patterned by soluble factors from adjacent germ layers
Wells, J. M., & Melton, D. A. (2000) · Development · doi:10.1242/dev.127.8.1563 · Cited by 366 · see citing works
AnFgf8mouse mutant phenocopies human 22q11 deletion syndrome
Frank, D. U., Fotheringham, L., Brewer, J. A., Muglia, L. J., Tristani‐Firouzi, M., Capecchi, M. R., & Moon, A. (2002) · Development · doi:10.1242/dev.129.19.4591 · Cited by 359 · see citing works
Origin and development of the zebrafish endoderm
Warga, R. M., & Nüsslein‐Volhard, C. (1999) · Development · doi:10.1242/dev.126.4.827 · Cited by 355 · see citing works
GATA4 is essential for formation of the proepicardium and regulates cardiogenesis
Watt, A. J., Battle, M. A., Li, J., & Duncan, S. A. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0400752101 · Cited by 354 · see citing works
Head induction by simultaneous repression of Bmp and Wnt signalling in Xenopus
Glinka, A., Wu, W., Onichtchouk, D., Blumenstock, C., & Niehrs, C. (1997) · Nature · doi:10.1038/39092 · Cited by 350 · see citing works
Genetic dissection ofnodalfunction in patterning the mouse embryo
Lowe, L. A., Yamada, S., & Kuehn, M. R. (2001) · Development · doi:10.1242/dev.128.10.1831 · Cited by 344 · see citing works
Morphogenesis of the murine node and notochordal plate
Sulik, K., Dehart, D. B., Inagaki, T., Carson, J. L., Vrablic, T., Gesteland, K., & Schoenwolf, G. C. (1994) · Developmental Dynamics · doi:10.1002/aja.1002010309 · Cited by 338 · see citing works
Vitelli, F. (2002) · Human Molecular Genetics · doi:10.1093/hmg/11.8.915 · Cited by 331 · see citing works
Dufort, D., Schwartz, L., Harpal, K., & Rossant, J. (1998) · Development · doi:10.1242/dev.125.16.3015 · Cited by 327 · see citing works
Cell fate decisions within the mouse organizer are governed by graded Nodal signalsPreprint
Vincent, S. D., Dunn, N. R., Hayashi, S., Norris, D. P., & Robertson, E. J. (2003) · Genes & Development · doi:10.1101/gad.1100503 · Cited by 318 · see citing works
Different thresholds of fibroblast growth factors pattern the ventral foregut into liver and lung
Serls, A. E., Doherty, S., Parvatiyar, P., Wells, J. M., & Deutsch, G. H. (2004) · Development · doi:10.1242/dev.01570 · Cited by 313 · see citing works
Molkentin, J. D., Kalvakolanu, D. V., & Markham, B. E. (1994) · Molecular and Cellular Biology · doi:10.1128/mcb.14.7.4947 · Cited by 309 · see citing works
Failure of ventral closure and axial rotation in embryos lacking the proprotein convertase Furin
Roebroek, A., Umans, L., Pauli, I. G. L., Robertson, E. J., LEUVEN, F. V., de Ven, W. J. M. V., & Constam, D. B. (1998) · Development · doi:10.1242/dev.125.24.4863 · Cited by 304 · see citing works
Weinstein, M. B., Yang, X. Y., Li, C., Xu, X., Gotay, J., & Deng, C. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.16.9378 · Cited by 300 · see citing works
Tremblay, K. D., & Zaret, K. S. (2005) · Developmental Biology · doi:10.1016/j.ydbio.2005.01.003 · Cited by 299 · see citing works
Reprogramming of intestinal differentiation and intercalary regeneration in Cdx 2 mutant mice
Beck, F., Chawengsaksophak, K., Waring, P., Playford, R. J., & Furness, J. B. (1999) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.96.13.7318 · Cited by 282 · see citing works
Sox17 and β-catenin cooperate to regulate the transcription of endodermal genes
Sinner, D. I., Rankin, S. A., Lee, M. M., & Zorn, A. M. (2004) · Development · doi:10.1242/dev.01176 · Cited by 281 · see citing works
Lawson, K. A., Pedersen, R. A., & van de Geer, S. (1987) · Development · doi:10.1242/dev.101.3.627 · Cited by 279 · see citing works
Endoderm development: from patterning to organogenesis
Grapin‐Botton, A., & Melton, D. A. (2000) · Trends in Genetics · doi:10.1016/s0168-9525(99)01957-5 · Cited by 279 · see citing works
Rhinn, M., Dierich, A., Shawlot, W., Behringer, R. R., LeMeur, M., & Ang, S. (1998) · Development · doi:10.1242/dev.125.5.845 · Cited by 279 · see citing works
Bort, R., Martinez-Barbera, J. P., Beddington, R. S. P., & Zaret, K. S. (2004) · Development · doi:10.1242/dev.00965 · Cited by 267 · see citing works
casanova Plays an Early and Essential Role in Endoderm Formation in Zebrafish
Alexander, J. S., Rothenberg, M. E., Henry, G. L., & Stainier, D. Y. R. (1999) · Developmental Biology · doi:10.1006/dbio.1999.9441 · Cited by 266 · see citing works
Formation of Multiple Hearts in Mice following Deletion of β-catenin in the Embryonic Endoderm
Lickert, H., Kutsch, S., Kanzler, B., Tamai, Y., Taketo, M. M., & Kemler, R. (2002) · Developmental Cell · doi:10.1016/s1534-5807(02)00206-x · Cited by 260 · see citing works
Kinder, S. J., Tsang, T. E., Wakamiya, M., Sasaki, H., Behringer, R. R., Nagy, A., & Tam, P. (2001) · Development · doi:10.1242/dev.128.18.3623 · Cited by 247 · see citing works
Self-citationPiotrowski, T., & Nüsslein‐Volhard, C. (2000) · Developmental Biology · doi:10.1006/dbio.2000.9842 · Cited by 239 · see citing works
GATA6 Is Essential for Embryonic Development of the Liver but Dispensable for Early Heart Formation
Zhao, R., Watt, A. J., Li, J., Luebke-Wheeler, J. L., Morrisey, E. E., & Duncan, S. A. (2005) · Molecular and Cellular Biology · doi:10.1128/mcb.25.7.2622-2631.2005 · Cited by 239 · see citing works
Niederreither, K., Vermot, J., Roux, I. L., Schuhbaur, B., Chambon, P., & Dollé, P. (2003) · Development · doi:10.1242/dev.00463 · Cited by 238 · see citing works
Wallin, J., Eibel, H., Neubüser, A., Wilting, J., Koseki, H., & Balling, R. (1996) · Development · doi:10.1242/dev.122.1.23 · Cited by 236 · see citing works
Macatee, T. L., Hammond, B. P., Arenkiel, B. R., Francis, L., Frank, D. U., & Moon, A. (2003) · Development · doi:10.1242/dev.00850 · Cited by 233 · see citing works
<i>Mixl1</i>is required for axial mesendoderm morphogenesis and patterning in the murine embryo
Hart, A. H., Hartley, L., Sourris, K., Stadler, E. S., Li, R., Stanley, E. G., Tam, P. P. L., Elefanty, A. G., & Robb, L. (2002) · Development · doi:10.1242/dev.129.15.3597 · Cited by 229 · see citing works
Self-citationLawson, K. A., Meneses, J. J., & Pedersen, R. A. (1986) · Developmental Biology · doi:10.1016/0012-1606(86)90253-8 · Cited by 227 · see citing works
Tanaka, S., Yamaguchi, Y. L., Tsoi, B., Lickert, H., & Tam, P. (2005) · Developmental Cell · doi:10.1016/j.devcel.2005.10.010 · Cited by 222 · see citing works
Self-citationWendling, O., Dennefeld, C., Chambon, P., & Mark, M. P. (2000) · Development · doi:10.1242/dev.127.8.1553 · Cited by 218 · see citing works
Disruption of thetalin gene arrests mouse development at the gastrulation stage
Monkley, S. J., Zhou, X.-H., Kinston, S., Giblett, S. M., Hemmings, L., Priddle, H., Brown, J., Pritchard, C. A., Critchley, D. R., & F�ssler, R. (2000) · Developmental Dynamics · doi:10.1002/1097-0177(2000)9999:9999 · Cited by 218 · see citing works
Narita, N., Bielińska, M., & Wilson, D. B. (1997) · Developmental Biology · doi:10.1006/dbio.1997.8684 · Cited by 212 · see citing works
Guris, D. L., Duester, G., Papaioannou, V. E., & Imamoto, A. (2006) · Developmental Cell · doi:10.1016/j.devcel.2005.12.002 · Cited by 212 · see citing works
Molotkov, A., Molotkova, N., & Duester, G. (2005) · Developmental Dynamics · doi:10.1002/dvdy.20256 · Cited by 211 · see citing works
Making Worm Guts: The Gene Regulatory Network of the Caenorhabditis elegans Endoderm
Maduro, M., & Rothman, J. H. (2002) · Developmental Biology · doi:10.1006/dbio.2002.0655 · Cited by 198 · see citing works
Chordin and noggin promote organizing centers of forebrain development in the mouse
Anderson, R. M., Lawrence, A. R., Stottmann, R. W., Bachiller, D., & Klingensmith, J. (2002) · Development · doi:10.1242/dev.129.21.4975 · Cited by 196 · see citing works
Heart induction by Wnt antagonists depends on the homeodomain transcription factor Hex
Foley, A. C., & Mercola, M. (2005) · Genes & Development · doi:10.1101/gad.1279405 · Cited by 195 · see citing works
Pharyngeal arch patterning in the absence of neural crest
Veitch, E., Begbie, J., Schilling, T. F., Smith, M. M., & Graham, A. (1999) · Current Biology · doi:10.1016/s0960-9822(00)80118-9 · Cited by 195 · see citing works
Kimura-Yoshida, C., Nakano, H., Okamura, D., Nakao, K., Yonemura, S., Belo, J. A., Aizawa, S., Matsui, Y., & Matsuo, I. (2005) · Developmental Cell · doi:10.1016/j.devcel.2005.09.011 · Cited by 193 · see citing works
Rodaway, A., Takeda, H., Koshida, S., Broadbent, J., Price, B. M. J., Smith, J. C., Patient, R. K., & Holder, N. (1999) · Development · doi:10.1242/dev.126.14.3067 · Cited by 186 · see citing works
Early endoderm development in vertebrates: lineage differentiation and morphogenetic function
Tam, P. (2003) · Current Opinion in Genetics & Development · doi:10.1016/s0959-437x(03)00085-6 · Cited by 181 · see citing works
Self-citationFormation of the definitive endoderm in mouse is a Smad2-dependent process
Tremblay, K. D., Hoodless, P. A., Bikoff, E. K., & Robertson, E. J. (2000) · Development · doi:10.1242/dev.127.14.3079 · Cited by 178 · see citing works
A glimpse into the molecular entrails of endoderm formationPreprint
Stainier, D. Y. R. (2002) · Genes & Development · doi:10.1101/gad.974902 · Cited by 177 · see citing works
Function of posterior HoxD genes in the morphogenesis of the anal sphincter
Kondo, T., Dollé, P., Zákány, J., & Duboule, D. (1996) · Development · doi:10.1242/dev.122.9.2651 · Cited by 171 · see citing works
Yang, D., Smith, E. R., Roland, I. H., Sheng, Z., He, J., Martin, W. D., Hamilton, T. C., Lambeth, J. D., & Xu, X. (2002) · Developmental Biology · doi:10.1006/dbio.2002.0810 · Cited by 167 · see citing works
Anterior mesendoderm induces mouse Engrailed genes in explant cultures
Ang, S., & Rossant, J. (1993) · Development · doi:10.1242/dev.118.1.139 · Cited by 165 · see citing works
Inactivation ofTbx1in the pharyngeal endoderm results in 22q11DS malformations
Arnold, J. S., Werling, U., Braunstein, E. M., Liao, J., Nowotschin, S., Edelmann, W., Hébert, J. M., & Morrow, B. E. (2006) · Development · doi:10.1242/dev.02264 · Cited by 164 · see citing works
Shawlot, W., Wakamiya, M., Kwan, K. M., Kania, A., Jessell, T. M., & Behringer, R. R. (1999) · Development · doi:10.1242/dev.126.22.4925 · Cited by 160 · see citing works
Bosse, A., Zülch, A., Becker, M.-B., Torres, M., Gómez-Skármeta, J. L., Modolell, J., & Gruß, P. (1997) · Mechanisms of Development · doi:10.1016/s0925-4773(97)00165-2 · Cited by 155 · see citing works
Establishment and Organization of Germ Layers in the Gastrulating Mouse Embryo
Tam, P., & Beddington, R. S. P. (2007) · Novartis Foundation symposium · doi:10.1002/9780470514221.ch3 · Cited by 150 · see citing works
Self-citationCrkl deficiency disrupts Fgf8 signaling in a mouse model of 22q11 deletion syndromes.
Moon, A., Guris, D. L., Seo, J.-H., Li, L., Hammond, J. W., Talbot, A., & Imamoto, A. (2006) · Developmental Cell · doi:10.1016/j.devcel.2005.12.003 · Cited by 150 · see citing works
Moore‐Scott, B. A., & Manley, N. R. (2004) · Developmental Biology · doi:10.1016/j.ydbio.2004.10.027 · Cited by 146 · see citing works
Functional ablation of the mouseLdb1gene results in severe patterning defects during gastrulation
Mukhopadhyay, M., Teufel, A., Yamashita, T., Agulnick, A. D., Chen, L., Downs, K. M., Schindler, A. B., Grinberg, A., Huang, S.-P., Dorward, D. W., et al. (2003) · Development · doi:10.1242/dev.00225 · Cited by 144 · see citing works
Differentiation and migration of endoderm in the rat and mouse at implantation
Enders, A. C., Given, R. L., & Schläfke, S. (1978) · The Anatomical Record · doi:10.1002/ar.1091900107 · Cited by 137 · see citing works
Gastrula organiser and embryonic patterning in the mouse
Robb, L., & Tam, P. (2004) · Seminars in Cell and Developmental Biology · doi:10.1016/j.semcdb.2004.04.005 · Cited by 128 · see citing works
Self-citationAnimal–Vegetal Axis Patterning Mechanisms in the Early Sea Urchin Embryo
Angerer, L. M., & Angerer, R. C. (2000) · Developmental Biology · doi:10.1006/dbio.1999.9553 · Cited by 126 · see citing works
Hindgut defects and transformation of the gastro‐intestinal tract in Tcf4−/−/Tcf1−/− embryos
Gregorieff, A., Grosschedl, R., & Clevers, H. C. (2004) · The EMBO Journal · doi:10.1038/sj.emboj.7600191 · Cited by 123 · see citing works
Camus, A., Davidson, B. P., Billiards, S. S., Khoo, P., Rivera‐Pérez, J. A., Wakamiya, M., Behringer, R. R., & Tam, P. (2000) · Development · doi:10.1242/dev.127.9.1799 · Cited by 118 · see citing works
Self-citationPolarity of the mouse embryo is anticipated before implantation
Weber, R., Pedersen, R. A., Wianny, F., Evans, M. J., & Zernicka‐Goetz, M. (1999) · Development · doi:10.1242/dev.126.24.5591 · Cited by 118 · see citing works
Huang, D., Chen, S. W., Langston, A. W., & Gudas, L. J. (1998) · Development · doi:10.1242/dev.125.16.3235 · Cited by 118 · see citing works
Lin, T.-P., Labosky, P. A., Grabel, L. B., Kozak, C. A., Pitman, J. L., Kleeman, J. E., & MacLeod, C. L. (1994) · Developmental Biology · doi:10.1006/dbio.1994.1305 · Cited by 112 · see citing works
Matt, N., Ghyselinck, N. B., Wendling, O., Chambon, P., & Mark, M. P. (2003) · Development · doi:10.1242/dev.00428 · Cited by 109 · see citing works
Hallaq, H., Pinter, E., Enciso, J., McGrath, J. M., Zeiss, C. J., Brueckner, M. K., Madri, J. A., Jacobs, H. C., Wilson, C., Vasavada, H., et al. (2004) · Development · doi:10.1242/dev.01393 · Cited by 107 · see citing works
Gastrulation in the mouse embryo: Ultrastructural and molecular aspects of germ layer morphogenesis
Tam, P., Williams, E. A., & Chan, W. Y. (1993) · Microscopy Research and Technique · doi:10.1002/jemt.1070260405 · Cited by 107 · see citing works
Self-citationMüller, T. S., Ebensperger, C., Neubüser, A., Koseki, H., Balling, R., Christ, B., & Wilting, J. (1996) · Developmental Biology · doi:10.1006/dbio.1996.0227 · Cited by 107 · see citing works
The mammalian twisted gastrulation gene functions in foregut and craniofacial development
Petryk, A., Anderson, R. M., Jarcho, M. P., Leaf, I. A., Carlson, C. S., Klingensmith, J., Shawlot, W., & O’Connor, M. B. (2004) · Developmental Biology · doi:10.1016/j.ydbio.2003.11.015 · Cited by 104 · see citing works
Mml, a mouse Mix-like gene expressed in the primitive streak
Pearce, J., & Evans, M. J. (1999) · Mechanisms of Development · doi:10.1016/s0925-4773(99)00135-5 · Cited by 104 · see citing works
Conserved Requirement of Lim1 Function for Cell Movements during Gastrulation
Hukriede, N. A., Tsang, T. E., Habas, R., Khoo, P., Steiner, K. A., Weeks, D. L., Tam, P., & Dawid, I. B. (2003) · Developmental Cell · doi:10.1016/s1534-5807(02)00398-2 · Cited by 100 · see citing works
Self-citationConstam, D. B., & Robertson, E. J. (2000) · Development · doi:10.1242/dev.127.2.245 · Cited by 96 · see citing works
Dkk1 and noggin cooperate in mammalian head inductionPreprint
Barrantes, I. D. B., Davidson, G. R., Gröne, H., Westphal, H., & Niehrs, C. (2003) · Genes & Development · doi:10.1101/gad.269103 · Cited by 93 · see citing works
Tail gut endoderm and gut/genitourinary/tail development: a new tissue-specific role forHoxa13
Barbara, P. D. S., & Roberts, D. J. (2002) · Development · doi:10.1242/dev.129.3.551 · Cited by 93 · see citing works
Hox genes and the making of sphincters
Zákány, J., & Duboule, D. (1999) · Nature · doi:10.1038/44511 · Cited by 90 · see citing works
Angiomotin Regulates Visceral Endoderm Movements during Mouse Embryogenesis
Shimono, A., & Behringer, R. R. (2003) · Current Biology · doi:10.1016/s0960-9822(03)00204-5 · Cited by 82 · see citing works
Iratni, R., Yan, Y., Chen, C., Ding, J., Zhang, Y., Price, S. M., Reinberg, D., & Shen, M. M. (2002) · Science · doi:10.1126/science.1073405 · Cited by 82 · see citing works
Zhou, L., Dey, C. R., Wert, S. E., Yan, C., Costa, R. H., & Whitsett, J. A. (1997) · Developmental Dynamics · doi:10.1002/(sici)1097-0177(199711)210:3 · Cited by 72 · see citing works
Tam, P., Khoo, P., Wong, N., Tsang, T. E., & Behringer, R. R. (2004) · Developmental Biology · doi:10.1016/j.ydbio.2004.07.005 · Cited by 71 · see citing works
Self-citationSsdp1 regulates head morphogenesis of mouse embryos by activating the Lim1-Ldb1 complex
Nishioka, N., Nagano, S., Nakayama, R., Kiyonari, H., Ijiri, T. W., Taniguchi, K., Shawlot, W., Hayashizaki, Y., Westphal, H., Behringer, R. R., et al. (2005) · Development · doi:10.1242/dev.01844 · Cited by 68 · see citing works
Hallonet, M., Kaestner, K., Martín-Parras, L., Sasaki, H., Betz, U., & Ang, S. (2002) · Developmental Biology · doi:10.1006/dbio.2001.0536 · Cited by 67 · see citing works
Davis, S. W., Miura, S., Hill, C., Mishina, Y. M., & Klingensmith, J. (2004) · Developmental Biology · doi:10.1016/j.ydbio.2004.01.048 · Cited by 65 · see citing works
Smad2 and Smad3 coordinately regulate craniofacial and endodermal development
Liu, Y., Festing, M. H., Thompson, J. C., Hester, M. E., Rankin, S. A., El‐Hodiri, H. M., Zorn, A. M., & Weinstein, M. B. (2004) · Developmental Biology · doi:10.1016/j.ydbio.2004.03.017 · Cited by 54 · see citing works
Getting your head around Hex and Hesx1: forebrain formation in mouse
Martı́nez-Barberá, J. P., & Beddington, R. S. P. (2001) · The International Journal of Developmental Biology · doi:10.1387/ijdb.11291863 · Cited by 53 · see citing works
Yamamoto, S., Hikasa, H., Ono, H., & Taira, M. (2003) · Developmental Biology · doi:10.1016/s0012-1606(03)00034-4 · Cited by 50 · see citing works
Pfendler, K. C., Catuar, C. S., Meneses, J. J., & Pedersen, R. A. (2005) · Stem Cells and Development · doi:10.1089/scd.2005.14.162 · Cited by 45 · see citing works
Regulation of Hex Gene Expression by a Smads-dependent Signaling Pathway
Zhang, W., Yatskievych, T. A., Cao, X., & Antin, P. B. (2002) · Journal of Biological Chemistry · doi:10.1074/jbc.m208056200 · Cited by 45 · see citing works
Cell lineage analysis of the primitive and visceral endoderm of mouse embryos cultured in vitro
Kadokawa, Y., Kato, Y., & Eguchi, G. (1987) · Cell Differentiation · doi:10.1016/0045-6039(87)90450-7 · Cited by 35 · see citing works
Sousa-Nunes, R. (2003) · Genome Research · doi:10.1101/gr.1362303 · Cited by 31 · see citing works
Transcriptional regulation of the homeobox gene Mixl1 by TGF-β and FoxH1
Hart, A. H., Willson, T. A., Wong, M. S., Parker, K., & Robb, L. (2005) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2005.06.044 · Cited by 23 · see citing works
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Organoid Models and Applications in Biomedical Research
Xinaris, C., Brizi, V., & Remuzzi, G. (2015) · The Nephron journals/Nephron journals · doi:10.1159/000433566 · Cited by 3,517 · see citing works
Gene function in mouse embryogenesis: get set for gastrulation
Tam, P., & Loebel, D. A. F. (2007) · Nature Reviews Genetics · doi:10.1038/nrg2084 · Cited by 593 · see citing works
Self-citationNodal signaling: developmental roles and regulation
Shen, M. M. (2007) · Development · doi:10.1242/dev.000166 · Cited by 537 · see citing works
van den Brink, S., Baillie‐Johnson, P., Balayo, T., Hadjantonakis, A., Nowotschin, S., Turner, D. A., & Arias, A. M. (2014) · Development · doi:10.1242/dev.113001 · Cited by 461 · see citing works
Chu, L.-F., Leng, N., Zhang, J., Hou, Z., Mamott, D., Vereide, D. T., Choi, J., Kendziorski, C., Stewart, R., & Thomson, J. A. (2016) · Genome Biology · doi:10.1186/s13059-016-1033-x · Cited by 477 · see citing works
“When applied WaveCrest to the scRNA-seq DE differentiation time course data, we selected the genes of interest by combining empirical results from SCPattern and prior knowledge [1, 2, 5, 7, 9, 20].”
MethodRedefining the Progression of Lineage Segregations during Mammalian Embryogenesis by Clonal Analysis
Tzouanacou, E., Wegener, A., Wymeersch, F. J., Wilson, V. A., & Nicolas, J.-F. (2009) · Developmental Cell · doi:10.1016/j.devcel.2009.08.002 · Cited by 427 · see citing works
Borowiak, M., Maehr, R., Chen, S., Chen, A. E., Tang, W., Fox, J. L., Schreiber, S. L., & Melton, D. A. (2009) · Cell stem cell · doi:10.1016/j.stem.2009.01.014 · Cited by 419 · see citing works
Efficient Differentiation of Functional Hepatocytes from Human Embryonic Stem Cells
Agarwal, S., Holton, K., & Lanza, R. (2008) · Stem Cells · doi:10.1634/stemcells.2007-1102 · Cited by 402 · see citing works
Kwon, G. S., Viotti, M., & Hadjantonakis, A.-K. (2008) · Developmental Cell · doi:10.1016/j.devcel.2008.07.017 · Cited by 402 · see citing works
Intestinal development and differentiation
Noah, T. K., Donahue, B., & Shroyer, N. F. (2011) · Experimental Cell Research · doi:10.1016/j.yexcr.2011.09.006 · Cited by 384 · see citing works
Sözen, B., Amadei, G., Cox, A. L., Wang, R., Na, E., Czukiewska, S. M., Chappell, L., Voet, T., Michel, G., Jing, N., et al. (2018) · Nature Cell Biology · doi:10.1038/s41556-018-0147-7 · Cited by 311 · see citing works
Morphogenesis and maturation of the embryonic and postnatal intestine
Chin, A. M., Hill, D. R., Aurora, M., & Spence, J. R. (2017) · Seminars in Cell and Developmental Biology · doi:10.1016/j.semcdb.2017.01.011 · Cited by 222 · see citing works
A Roadmap for Human Liver Differentiation from Pluripotent Stem Cells
Ang, L. T., Tan, A. K. Y., Autio, M. I., Goh, S. H., Choo, S. H., Lee, K. L., Tan, J., Pan, B., Lee, J. J. H., Lum, J. J., et al. (2018) · Cell Reports · doi:10.1016/j.celrep.2018.01.087 · Cited by 220 · see citing works
Foxa2 regulates polarity and epithelialization in the endoderm germ layer of the mouse embryo
Burtscher, I., & Lickert, H. (2009) · Development · doi:10.1242/dev.028415 · Cited by 213 · see citing works
Vertebrate intestinal endoderm development
Spence, J. R., Lauf, R., & Shroyer, N. F. (2011) · Developmental Dynamics · doi:10.1002/dvdy.22540 · Cited by 217 · see citing works
Fat Deposition and Fat Effects on Meat Quality—A Review
Schumacher, M. L., DelCurto-Wyffels, H. M., Thomson, J. M., & Boles, J. A. (2022) · Animals · doi:10.3390/ani12121550 · Cited by 208 · see citing works
Morgani, S. M., Metzger, J. J., Nichols, J., Siggia, E. D., & Hadjantonakis, A. (2018) · eLife · doi:10.7554/elife.32839 · Cited by 177 · see citing works
The origin of animals: an ancestral reconstruction of the unicellular-to-multicellular transition
Ros-Rocher, N., Pérez-Posada, A., Leger, M. M., & Ruiz‐Trillo, I. (2021) · Open Biology · doi:10.1098/rsob.200359 · Cited by 160 · see citing works
Bardot, E., & Hadjantonakis, A. (2020) · Mechanisms of Development · doi:10.1016/j.mod.2020.103617 · Cited by 144 · see citing works
Mapping cells through time and space with moscot
Klein, D., Palla, G., Lange, M., Klein, M., Piran, Z., Gander, M., Meng-Papaxanthos, L., Sterr, M., Saber, L., Jing, C., et al. (2025) · Nature · doi:10.1038/s41586-024-08453-2 · Cited by 202 · see citing works
Directed Differentiation of Human Embryonic Stem Cells into the Pancreatic Endocrine Lineage
Phillips, B., Hentze, H., Rust, W., Chen, Q.-P., Chipperfield, H., Tan, E., Abraham, S., Sadasivam, A., Soong, P., Wang, S. T., et al. (2007) · Stem Cells and Development · doi:10.1089/scd.2007.0029 · Cited by 156 · see citing works
Morphogenesis of the thyroid gland
Fagman, H., & Nilsson, M. (2009) · Molecular and Cellular Endocrinology · doi:10.1016/j.mce.2009.12.008 · Cited by 143 · see citing works
Teo, A., Ali, Y., Wong, K.-Y., Chipperfield, H., Sadasivam, A., Poobalan, Y., Tan, E., Wang, S. T., Abraham, S., Tsuneyoshi, N., et al. (2012) · Stem Cells · doi:10.1002/stem.1022 · Cited by 122 · see citing works
Organoids and the genetically encoded self‐assembly of embryonic stem cells
Turner, D. A., Baillie‐Johnson, P., & Arias, A. M. (2015) · BioEssays · doi:10.1002/bies.201500111 · Cited by 115 · see citing works
Pancreatic Development and Disease
Cano, D. A., Hebrok, M., & Zenker, M. (2007) · Gastroenterology · doi:10.1053/j.gastro.2006.12.054 · Cited by 114 · see citing works
Dkk1andWnt3interact to control head morphogenesis in the mouse
Lewis, S. L., Khoo, P., Young, R. A. D., Steiner, K. A., Wilcock, C. C., Mukhopadhyay, M., Westphal, H., Jamieson, R. V., Robb, L., & Tam, P. (2008) · Development · doi:10.1242/dev.018853 · Cited by 105 · see citing works
Self-citationThe endoderm: a divergent cell lineage with many commonalities
Nowotschin, S., Hadjantonakis, A.-K., & Campbell, K. (2019) · Development · doi:10.1242/dev.150920 · Cited by 94 · see citing works
The endocrine pancreas: insights into development, differentiation, and diabetes
Mastracci, T. L., & Sussel, L. (2012) · Wiley Interdisciplinary Reviews Developmental Biology · doi:10.1002/wdev.44 · Cited by 91 · see citing works
Tamplin, O. J., Kinzel, D., Cox, B., Bell, C., Rossant, J., & Lickert, H. (2008) · BMC Genomics · doi:10.1186/1471-2164-9-511 · Cited by 85 · see citing works
Loss of Tgif Function Causes Holoprosencephaly by Disrupting the Shh Signaling Pathway
Taniguchi, K., Anderson, A. E., Sutherland, A. E., & Wotton, D. (2012) · PLoS Genetics · doi:10.1371/journal.pgen.1002524 · Cited by 78 · see citing works
Regionalisation of the endoderm progenitors and morphogenesis of the gut portals of the mouse embryo
Franklin, V., Khoo, P., Bildsoe, H., Wong, N., Lewis, S., & Tam, P. (2008) · Mechanisms of Development · doi:10.1016/j.mod.2008.04.001 · Cited by 77 · see citing works
Self-citationGenetic and cellular mechanisms regulating anterior foregut and esophageal development
Jacobs, I. J., Ku, W.-Y., & Que, J. (2012) · Developmental Biology · doi:10.1016/j.ydbio.2012.06.016 · Cited by 77 · see citing works
Ichikawa, T., Nakazato, K., Keller, P., Kajiura‐Kobayashi, H., Stelzer, E. H. K., Mochizuki, A., & Nonaka, S. (2013) · PLoS ONE · doi:10.1371/journal.pone.0064506 · Cited by 77 · see citing works
Izumi, N., Era, T., Akimaru, H., Yasunaga, M., & Nishikawa, S. (2007) · Stem Cells · doi:10.1634/stemcells.2006-0681 · Cited by 70 · see citing works
Control of Early Fate Decisions in Human ES Cells by Distinct States of TGFβ Pathway Activity
Greber, B., Lehrach, H. R., & Adjaye, J. (2008) · Stem Cells and Development · doi:10.1089/scd.2008.0035 · Cited by 69 · see citing works
Kandasamy, J., Huda, S. A., Ambalavanan, N., & Jilling, T. (2014) · Pathophysiology · doi:10.1016/j.pathophys.2014.01.001 · Cited by 68 · see citing works
Downs, K. M. (2008) · Developmental Dynamics · doi:10.1002/dvdy.21438 · Cited by 68 · see citing works
Smith, B. T., Mussell, J. C., Fleming, P. A., Barth, J. L., Spyropoulos, D. D., Cooley, M. A., Drake, C. J., & Argraves, W. S. (2006) · BMC Developmental Biology · doi:10.1186/1471-213x-6-30 · Cited by 66 · see citing works
Epithelial stem cells and intestinal cancer
Tan, S., & Barker, N. (2014) · Seminars in Cancer Biology · doi:10.1016/j.semcancer.2014.02.005 · Cited by 66 · see citing works
Spence, J. R., & Wells, J. M. (2007) · Developmental Dynamics · doi:10.1002/dvdy.21366 · Cited by 64 · see citing works
Rubin, D. C. (2007) · Current Opinion in Gastroenterology · doi:10.1097/mog.0b013e3280145082 · Cited by 66 · see citing works
Cripto is essential to capture mouse epiblast stem cell and human embryonic stem cell pluripotency
Fiorenzano, A., Pascale, E., D’Aniello, C., Acampora, D., Bassalert, C., Russo, F., Andolfi, G., Biffoni, M., Francescangeli, F., Zeuner, A., et al. (2016) · Nature Communications · doi:10.1038/ncomms12589 · Cited by 64 · see citing works
Kim, J., Kim, H. W., Cha, K. J., Han, J., Jang, Y. J., Kim, J., & Kim, J. (2016) · ACS Nano · doi:10.1021/acsnano.5b06985 · Cited by 63 · see citing works
Coming together is a beginning: The making of an intervertebral disc
Chan, W. C. W., Au, T. Y. K., Tam, V., Cheah, K. S. E., & Chan, D. T.-M. (2014) · Birth Defects Research Part C Embryo Today Reviews · doi:10.1002/bdrc.21061 · Cited by 62 · see citing works
Madabhushi, M. E., & Lacy, E. (2011) · Developmental Cell · doi:10.1016/j.devcel.2011.08.027 · Cited by 60 · see citing works
Wtap is required for differentiation of endoderm and mesoderm in the mouse embryo
Fukusumi, Y., Naruse, C., & Asano, M. (2008) · Developmental Dynamics · doi:10.1002/dvdy.21444 · Cited by 57 · see citing works
Hou, J., Charters, A. M., Lee, S. C., Zhao, Y., Wu, M. K., Jones, S. J., Marra, M. A., & Hoodless, P. A. (2007) · BMC Developmental Biology · doi:10.1186/1471-213x-7-92 · Cited by 56 · see citing works
“Its early regionalized expression within DE reflects an early specification of cell fate along both the anterior-posterior and lateral-medial axis of the embryonic gut [6,45].”
BackgroundAn atlas of rabbit development as a model for single-cell comparative genomics
Ton, M.-L. N., Keitley, D., Theeuwes, B., Guibentif, C., Ahnfelt‐Rønne, J., Andreassen, T. K., Calero‐Nieto, F. J., Imaz-Rosshandler, I., Pijuan-Sala, B., Nichols, J., et al. (2023) · Nature Cell Biology · doi:10.1038/s41556-023-01174-0 · Cited by 56 · see citing works
Kuo, H.-H., Lin, R., Hung, J., Hsieh, C.-B., Hung, T., Lo, F., Ho, M., Yeh, C., Huang, Y., Yu, J., et al. (2017) · Scientific Reports · doi:10.1038/s41598-017-11136-w · Cited by 55 · see citing works
A Gutsy Task: Generating Intestinal Tissue from Human Pluripotent Stem Cells
Finkbeiner, S. R., & Spence, J. R. (2013) · Digestive Diseases and Sciences · doi:10.1007/s10620-013-2620-2 · Cited by 48 · see citing works
Generation of functional hepatocytes from mouse induced pluripotent stem cells
Li, W., Wang, D., Qin, J., Liu, C., Zhang, Q., Zhang, X., Yu, X., Lahn, B. T., Mao, F. F., & Xiang, A. P. (2009) · Journal of Cellular Physiology · doi:10.1002/jcp.22000 · Cited by 49 · see citing works
Mapping cells through time and space with moscotPreprint
Klein, D., Palla, G., Lange, M., Klein, M., Piran, Z., Gander, M., Meng-Papaxanthos, L., Sterr, M., Bastidas-Ponce, A., Tarquis-Medina, M., et al. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.05.11.540374 · Cited by 49 · see citing works
TheGata5target,TGIF2, defines the pancreatic region by modulating BMP signals within the endoderm
Spagnoli, F. M., & Brivanlou, A. H. (2007) · Development · doi:10.1242/dev.008458 · Cited by 45 · see citing works
Chen, A. E., Borowiak, M., Sherwood, R. I., Kweudjeu, A., & Melton, D. (2013) · Development · doi:10.1242/dev.085431 · Cited by 57 · see citing works
Notch signaling in the division of germ layers in bilaterian embryos
Favarolo, M. B., & López, S. L. (2018) · Mechanisms of Development · doi:10.1016/j.mod.2018.06.005 · Cited by 44 · see citing works
A mouse line expressing Foxa2‐driven Cre recombinase in node, notochord, floorplate, and endoderm
Uetzmann, L., Burtscher, I., & Lickert, H. (2008) · genesis · doi:10.1002/dvg.20410 · Cited by 46 · see citing works
The Role of SOX9 Transcription Factor in Pancreatic and Duodenal Development
Belo, J., Krishnamurthy, M., Oakie, A., & Wang, R. (2013) · Stem Cells and Development · doi:10.1089/scd.2013.0106 · Cited by 46 · see citing works
Zhang, L., & Zhang, S. (2019) · Nucleic Acids Research · doi:10.1093/nar/gkz488 · Cited by 46 · see citing works
Suckling, Feeding, and Swallowing: Behaviors, Circuits, and Targets for Neurodevelopmental Pathology
Maynard, T. M., Zohn, I. E., Moody, S. A., & LaMantia, A. (2020) · Annual Review of Neuroscience · doi:10.1146/annurev-neuro-100419-100636 · Cited by 44 · see citing works
Chato, a KRAB zinc-finger protein, regulates convergent extension in the mouse embryo
García‐García, M. J., Shibata, M., & Anderson, K. V. (2008) · Development · doi:10.1242/dev.022897 · Cited by 45 · see citing works
Large intestine embryogenesis: Molecular pathways and related disorders (Review)
Kostouros, A., Koliarakis, I., Natsis, K. S., Spandidos, D. A., Tsatsakis, A. M., & Tsiaoussis, J. (2020) · International Journal of Molecular Medicine · doi:10.3892/ijmm.2020.4583 · Cited by 44 · see citing works
Biomaterials for intestinal organoid technology and personalized disease modeling
Hirota, A., AlMusawi, S., Nateri, A. S., Ordóñez‐Morán, P., & Imajo, M. (2021) · Acta Biomaterialia · doi:10.1016/j.actbio.2021.05.010 · Cited by 41 · see citing works
Compartmentalization of the foregut tube: developmental origins of the trachea and esophagus
Fausett, S. R., & Klingensmith, J. (2011) · Wiley Interdisciplinary Reviews Developmental Biology · doi:10.1002/wdev.12 · Cited by 38 · see citing works
Vianello, S., & Lütolf, M. P. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.06.07.138883 · Cited by 38 · see citing works
Buchholz, D. R., Singamsetty, S., Karadge, U. B., Williamson, S. R., Langer, C. E., & Elinson, R. P. (2007) · Developmental Dynamics · doi:10.1002/dvdy.21153 · Cited by 37 · see citing works
Wang, M., Yang, X., Zhang, P., Cai, L., Yang, X., Chen, Y., Jing, Y., Kong, J., Yang, X., & Sun, F. (2016) · Advanced Science · doi:10.1002/advs.201500393 · Cited by 37 · see citing works
Towards cell therapy for diabetes
Madsen, O. D., & Serup, P. (2006) · Nature Biotechnology · doi:10.1038/nbt1206-1481 · Cited by 35 · see citing works
Xu, H., Tsang, K. S., Wang, Y., Chan, J. C. N., Xu, G., & Gao, W. (2014) · Journal of Biological Chemistry · doi:10.1074/jbc.m114.572560 · Cited by 34 · see citing works
Mammalian germ cell migration during development, growth, and homeostasis
Kanamori, M., Oikawa, K., Tanemura, K., & Hara, K. (2019) · Reproductive Medicine and Biology · doi:10.1002/rmb2.12283 · Cited by 34 · see citing works
Generating Intestinal Tissue from Stem Cells: Potential for Research and Therapy
Howell, J. C., & Wells, J. M. (2011) · Regenerative Medicine · doi:10.2217/rme.11.90 · Cited by 33 · see citing works
Gutsy moves in mice: cellular and molecular dynamics of endoderm morphogenesis
Viotti, M., Foley, A. C., & Hadjantonakis, A. (2014) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2013.0547 · Cited by 30 · see citing works
Lv, Y., Wu, J., Li, X.-K., Zhang, J.-S., & Bellusci, S. (2019) · Front. Cell Dev. Biol. · doi:10.3389/fcell.2019.00326 · Cited by 28 · see citing works
Single-cell patterning and axis characterization in the murine and human definitive endoderm
Li, L., Wang, X., Xu, Z., Wang, Y., Ye, F., Yang, L., Qiu, W., Li, Y., Yu, X., Gu, J., et al. (2020) · Cell Research · doi:10.1038/s41422-020-00426-0 · Cited by 32 · see citing works
Sox17-dependent gene expression and early heart and gut development in Sox17-deficient mouse embryos
Pfister, S., Jones, V. J., Power, M., Truisi, G. L., Khoo, P., Steiner, K. A., Kanai‐Azuma, M., Kanai, Y., Tam, P., & Loebel, D. A. F. (2011) · The International Journal of Developmental Biology · doi:10.1387/ijdb.103158sp · Cited by 30 · see citing works
Self-citationA gene regulatory network controls the balance between mesendoderm and ectoderm at pluripotency exit
Sladitschek, H. L., & Neveu, P. A. (2019) · Molecular Systems Biology · doi:10.15252/msb.20199043 · Cited by 25 · see citing works
Smith, R. J., Zhang, H., Hu, S. S., Yung, T. M., Francis, R., Lee, L., Onaitis, M. W., Dirks, P. B., Zang, C., & Kim, T.-H. (2022) · Nature Communications · doi:10.1038/s41467-022-30624-w · Cited by 24 · see citing works
From endoderm to pancreas: a multistep journey
Spagnoli, F. (2007) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-007-7184-x · Cited by 28 · see citing works
Development of the Gastrointestinal Tract
Schoenwolf, G. C., Bleyl, S. B., Brauer, P. R., & Francis‐West, P. H. (2009) · Elsevier eBooks · doi:10.1016/b978-0-443-06811-9.10014-4 · Cited by 27 · see citing works
Qi, H., Huang, G., Han, Y. L., Lin, W., Li, X., Wang, S., Lu, T. J., & Xu, F. (2016) · Critical Reviews in Biotechnology · doi:10.3109/07388551.2014.922917 · Cited by 26 · see citing works
Development of Lung Epithelium from Induced Pluripotent Stem Cells
Ghaedi, M., Niklason, L. E., & Williams, J. C. (2015) · Current Transplantation Reports · doi:10.1007/s40472-014-0039-0 · Cited by 26 · see citing works
Generation of Distal Airway Epithelium from Multipotent Human Foregut Stem Cells
Hannan, N. R. F., Sampaziotis, F., Segeritz, C., Hanley, N. A., & Vallier, L. (2015) · Stem Cells and Development · doi:10.1089/scd.2014.0512 · Cited by 24 · see citing works
Induced pluripotent stem cells for treating cystic fibrosis: State of the science
Pollard, B. S., & Pollard, H. B. (2018) · Pediatric Pulmonology · doi:10.1002/ppul.24118 · Cited by 24 · see citing works
Duggal, G., Heindryckx, B., Warrier, S., O'Leary, T., der Jeught, M. V., Lierman, S., Vossaert, L., Deroo, T., Deforce, D. L. D., Lopes, S. M. C. D. S., et al. (2013) · Stem Cells and Development · doi:10.1089/scd.2013.0024 · Cited by 24 · see citing works
Yang, Y., Anderson, R. M., & Klingensmith, J. (2010) · Human Molecular Genetics · doi:10.1093/hmg/ddq208 · Cited by 24 · see citing works
Montañez, E., Karaköse, E., Tischner, D., Villunger, A., & Fässler, R. (2012) · Journal of Cell Science · doi:10.1242/jcs.112029 · Cited by 24 · see citing works
Zhang, T., Guo, X., & Chen, Y. (2013) · PLoS ONE · doi:10.1371/journal.pone.0065058 · Cited by 22 · see citing works
Developmental Molecular Biology of the Pancreas
Murtaugh, L. C., Cleaver, O. B., & MacDonald, R. J. (2018) · Springer eBooks · doi:10.1007/978-1-4939-7193-0_4 · Cited by 23 · see citing works
Trask, M. C., Tremblay, K. D., & Mager, J. (2012) · Developmental Biology · doi:10.1016/j.ydbio.2012.05.031 · Cited by 22 · see citing works
Schröder, S. S., Tsikolia, N., Weizbauer, A., Hue, I., & Viebahn, C. (2016) · Cells Tissues Organs · doi:10.1159/000440951 · Cited by 22 · see citing works
Kaufman‐Francis, K., Goh, H. N., Kojima, Y., Studdert, J. B., Jones, V. J., Power, M., Wilkie, E. E., Teber, E., Loebel, D. A. F., & Tam, P. (2014) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2013.0550 · Cited by 20 · see citing works
Self-citationKwek, J. H. L., de Iongh, R. U., Nicholas, K. R., & Familari, M. (2008) · Journal of Experimental Zoology Part B Molecular and Developmental Evolution · doi:10.1002/jez.b.21227 · Cited by 20 · see citing works
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Xie, P., Shen, J., Yang, Y., Wang, X., Liu, W., Cao, H., Zheng, Y., Wu, C., Mao, G., He, J., et al. (2025) · Cell · doi:10.1016/j.cell.2025.05.035 · Cited by 20 · see citing works
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Addeo, M., Buonaiuto, S., Guerriero, I., Amendola, E., Visconte, F., Marino, A., Angelis, M. T. D., Russo, F., Roberto, L., Marotta, P., et al. (2019) · International Journal of Molecular Sciences · doi:10.3390/ijms21010008 · Cited by 20 · see citing works
Kim, J., Rothová, M., Madan, E., Rhee, S., Weng, G., Palma, A. M., Liao, L., David, E., Amit, I., Hajkarim, M. C., et al. (2023) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2205371120 · Cited by 19 · see citing works
Li, K., Yu, P.-L., Zheng, Q.-Q., Wang, X., Fang, X., Li, L., & Xu, C. (2025) · Cell · doi:10.1016/j.cell.2024.12.012 · Cited by 20 · see citing works
Development of Adaptive Construction Structure by Variable Geometry Truss
Inoue, F. (2008) · InTech eBooks · doi:10.5772/5543 · Cited by 17 · see citing works
Mechanobiology of vertebrate gut morphogenesis
Durel, J. F., & Nerurkar, N. L. (2020) · Current Opinion in Genetics & Development · doi:10.1016/j.gde.2020.04.002 · Cited by 19 · see citing works
Caronna, E. A., Patterson, E. S., Hummert, P. M., & Kroll, K. L. (2013) · Stem Cells · doi:10.1002/stem.1410 · Cited by 19 · see citing works
Embryonic fates for extraembryonic lineages: New perspectives
Fraser, S. T., & Baron, M. H. (2009) · Journal of Cellular Biochemistry · doi:10.1002/jcb.22165 · Cited by 19 · see citing works
Zhao, H., Han, D., Dawid, I. B., Pieler, T., & Chen, Y. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1206547109 · Cited by 17 · see citing works
- Authors
- Lewis, S. L., & Tam, P. P. L.
- Affiliations
- The University of Sydney (AU)
- Corresponding author
- Tam, Patrick P.L.
- ORCID
- Tam, Patrick P.L.
- Venue
- Developmental Dynamics
- Publisher
- Wiley
- Published
- 2006-06-02
- Volume
- 235
- Issue
- 9
- Pages
- 2315-2329
- ISSN
- 1058-8388 (ISSN-L)
- 1097-0177
- OpenAlex
- W2073637472
- Cited by
- 164
- References
- 115
- Citations by year
- 2026: 5 · 2025: 9 · 2024: 1 · 2023: 6 · 2022: 4 · 2021: 2 · 2020: 8 · 2019: 10 · 2018: 12 · 2017: 4 · 2016: 8 · 2015: 7 · 2014: 11 · 2013: 9 · 2012: 10
- FWCI
- 1.09
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Developmental Dynamics (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Developmental Biology and Gene Regulation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Pluripotent Stem Cells Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Renal and related cancers
- Keywords
- definitive endoderm, mouse embryo, gastrulation, visceral endoderm, germ layer patterning, pharynx, endoderm patterning
- MeSH terms
- Animals, Digestive System, Endoderm, Female, Gastrula, Head, Morphogenesis, Mutation, Pregnancy, Stem Cells, Gene Expression Regulation, Developmental, Body Patterning, Mice
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