ggplot2

Disproportionate exposure to urban heat island intensity across major US cities

Hsu, A., Sheriff, G., Chakraborty, T., & Manya, D. (2021) · Nature Communications · doi:10.1038/s41467-021-22799-5 · Cited by 846

Emergence of SARS-CoV-2 Omicron lineages BA.4 and BA.5 in South Africa

Tegally, H., Moir, M., Everatt, J., Giovanetti, M., Scheepers, C., Wilkinson, E., Subramoney, K., Makatini, Z., Moyo, S., Amoako, D. G., et al. (2022) · Nature Medicine · doi:10.1038/s41591-022-01911-2 · Cited by 707

50 Years of Data Science

Donoho, D. (2017) · Journal of Computational and Graphical Statistics · doi:10.1080/10618600.2017.1384734 · Cited by 695

Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data

Dimitrov, D., Türei, D., Garrido-Rodriguez, M., Burmedi, P. L., Nagai, J. S., Boys, C., Ramirez Flores, R. O., Kim, H., Szalai, B., Costa, I. G., et al. (2022) · Nature Communications · doi:10.1038/s41467-022-30755-0 · Cited by 664

Transcriptional signature in microglia associated with Aβ plaque phagocytosis

Grubman, A., Choo, X. Y., Chew, G., Ouyang, J. F., Sun, G., Croft, N. P., Rossello, F. J., Simmons, R., Buckberry, S., Landin, D. V., et al. (2021) · Nature Communications · doi:10.1038/s41467-021-23111-1 · Cited by 357

Optimal dose and type of exercise to improve cognitive function in older adults: a systematic review and Bayesian model-based network meta-analysis of RCTs

Gallardo-Gómez, D., del Pozo-Cruz, J., Noetel, M., Álvarez-Barbosa, F., Alfonso-Rosa, R. M., & del Pozo Cruz, B. (2022) · Ageing Research Reviews · doi:10.1016/j.arr.2022.101591 · Cited by 268

Neurotransmitter classification from electron microscopy images at synaptic sites in Drosophila melanogaster

Eckstein, N., Bates, A. S., Champion, A., Du, M., Yin, Y., Schlegel, P., Lu, A. K.-Y., Rymer, T., Finley-May, S., Paterson, T., et al. (2024) · Cell · doi:10.1016/j.cell.2024.03.016 · Cited by 277

Student engagement declines in stem undergraduates during COVID-19-driven remote learning

Wester, E. R., Walsh, L. L., Arango-Caro, S., & Callis-Duehl, K. L. (2021) · Journal of Microbiology & Biology Education · doi:10.1128/jmbe.v22i1.2385 · Cited by 182

Resistance training prescription for muscle strength and hypertrophy in healthy adults: a systematic review and Bayesian network meta-analysis.

Currier, B. S., Mcleod, J. C., Banfield, L., Beyene, J., Welton, N. J., D'Souza, A. C., Keogh, J. A. J., Lin, L., Coletta, G., Yang, A., et al. (2023) · British Journal of Sports Medicine · doi:10.1136/bjsports-2023-106807 · Cited by 179

Molecular hallmarks of heterochronic parabiosis at single-cell resolution

Pálovics, R., Keller, A., Schaum, N., Tan, W., Fehlmann, T., Borja, M., Kern, F., Bonanno, L., Calcuttawala, K., Webber, J., et al. (2022) · Nature · doi:10.1038/s41586-022-04461-2 · Cited by 153

The best practice for microbiome analysis using R

Wen, T., Niu, G., Chen, T., Shen, Q., Yuan, J., & Liu, Y.-X. (2023) · Protein & Cell · doi:10.1093/procel/pwad024 · Cited by 139

Protective elements of mental health status during the COVID-19 outbreak in the Portuguese population.

Moreira, P., Ferreira, S., Couto, B., Machado-Sousa, M., Fernández, M., Raposo-Lima, C., Sousa, N., Picó-Pérez, M., & Morgado, P. (2020) · doi:10.1101/2020.04.28.20080671 · Cited by 131

H3K4me1 Distribution Predicts Transcription State and Poising at Promoters

Bae, S., & Lesch, B. J. (2020) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2020.00289 · Cited by 120

Optimal Dose and Type of Physical Activity to Improve Glycemic Control in People Diagnosed With Type 2 Diabetes: A Systematic Review and Meta-analysis

Gallardo-Gómez, D., Salazar-Martínez, E., Alfonso-Rosa, R. M., Ramos-Munell, J., del Pozo-Cruz, J., del Pozo Cruz, B., & Álvarez-Barbosa, F. (2024) · Diabetes Care · doi:10.2337/dc23-0800 · Cited by 137

Social isolation alters behavior, the gut-immune-brain axis, and neurochemical circuits in male and female prairie voles

Donovan, M., Mackey, C. S., Platt, G. N., Rounds, J., Brown, A. N., Trickey, D. J., Liu, Y., Jones, K. M., & Wang, Z. (2020) · Neurobiology of Stress · doi:10.1016/j.ynstr.2020.100278 · Cited by 85

Healthy aging and muscle function are positively associated with NAD+ abundance in humans

Janssens, G. E., Grevendonk, L., Perez, R. Z., Schomakers, B. V., de Vogel-van den Bosch, J., Geurts, J. M. W., van Weeghel, M., Schrauwen, P., Houtkooper, R. H., & Hoeks, J. (2022) · Nature Aging · doi:10.1038/s43587-022-00174-3 · Cited by 103

Structurally divergent and recurrently mutated regions of primate genomes

(2024) · doi:10.1016/j.cell.2024.01.052 · Cited by 73

Pervasive generation of non-canonical subgenomic RNAs by SARS-CoV-2

Nomburg, J., Meyerson, M., & DeCaprio, J. A. (2020) · Genome Medicine · doi:10.1186/s13073-020-00802-w · Cited by 63

Optimal dose and type of physical activity to improve functional capacity and minimise adverse events in acutely hospitalised older adults: a systematic review with dose-response network meta-analysis of randomised controlled trials

Gallardo-Gómez, D., del Pozo-Cruz, J., Pedder, H., Alfonso-Rosa, R. M., Álvarez-Barbosa, F., Noetel, M., Jasper, U., Chastin, S., Ramos-Munell, J., & del Pozo Cruz, B. (2023) · British Journal of Sports Medicine · doi:10.1136/bjsports-2022-106409 · Cited by 59

Genetic and phenotypic consequences of early domestication in black soldier flies (Hermetia illucens)

Rhode, C., Badenhorst, R., Hull, K. L., Greenwood, M. P., Bester‐van der Merwe, A. E., Andere, A. A., Picard, C. J., & Richards, C. (2020) · Animal Genetics · doi:10.1111/age.12961 · Cited by 58

A deeper look at carrier proteome effects for single-cell proteomics

Ye, Z., Batth, T. S., Rüther, P., & Olsen, J. V. (2022) · Communications Biology · doi:10.1038/s42003-022-03095-4 · Cited by 55

MicroRNA-100-5p and microRNA-298-5p released from apoptotic cortical neurons are endogenous Toll-like receptor 7/8 ligands that contribute to neurodegeneration

Wallach, T., Mossmann, Z. J., Szczepek, M., Wetzel, M., Machado, R., Raden, M., Miladi, M., Kleinau, G., Krüger, C., Dembny, P., et al. (2021) · Molecular Neurodegeneration · doi:10.1186/s13024-021-00498-5 · Cited by 48

Region-specific cellular and molecular basis of liver regeneration after acute pericentral injury.

Wang, S., Wang, X., Shan, Y., Tan, Z., Su, Y., Cao, Y., Wang, S., Dong, J., Gu, J., & Wang, Y. (2024) · Cell Stem Cell · doi:10.1016/j.stem.2024.01.013 · Cited by 40

Re-evaluating Homoploid Reticulate Evolution in Helianthus Sunflowers

Owens, G. L., Huang, K., Todesco, M., & Rieseberg, L. H. (2023) · Molecular Biology and Evolution · doi:10.1093/molbev/msad013 · Cited by 39

Genomic analysis of biomarkers related to the prognosis of acute myeloid leukemia

Li, G., Gao, Y., Li, K., Lin, A., & Jiang, Z. (2020) · Oncology Letters · doi:10.3892/ol.2020.11700 · Cited by 35

Genomic screening of 16 UK native bat species through conservationist networks uncovers coronaviruses with zoonotic potential

Tan, C. C. S., Trew, J., Peacock, T. P., Mok, K. Y., Hart, C., Lau, K., Ni, D., Orme, C. D. L., Ransome, E., Pearse, W. D., et al. (2023) · Nature Communications · doi:10.1038/s41467-023-38717-w · Cited by 34

Biophysical cartography of the native and human-engineered antibody landscapes quantifies the plasticity of antibody developability

Bashour, H., Smorodina, E., Pariset, M., Zhong, J., Akbar, R., Chernigovskaya, M., Lê Quý, K., Snapkow, I., Rawat, P., Krawczyk, K., et al. (2024) · Communications Biology · doi:10.1038/s42003-024-06561-3 · Cited by 32

Using Continuous Student Feedback to Course-Correct during COVID-19 for a Nonmajors Chemistry Course

Hwang, C. S. (2020) · Journal of Chemical Education · doi:10.1021/acs.jchemed.0c00808 · Cited by 30

Profiling research on PFAS in wildlife: Systematic evidence map and bibliometric analysis

Vendl, C., Taylor, M. D., Bräunig, J., Ricolfi, L., Ahmed, R., Chin, M., Gibson, M. J., Hesselson, D., Neely, G. G., Lagisz, M., et al. (2024) · Ecological Solutions and Evidence · doi:10.1002/2688-8319.12292 · Cited by 31

Spatially resolved analyses link genomic and immune diversity and reveal unfavorable neutrophil activation in melanoma

Mitra, A., Andrews, M. C., Roh, W., De Macedo, M. P., Hudgens, C. W., Carapeto, F., Singh, S., Reuben, A., Wang, F., Mao, X., et al. (2020) · Nature Communications · doi:10.1038/s41467-020-15538-9 · Cited by 27

Bimodular architecture of bacterial effector SAP05 that drives ubiquitin-independent targeted protein degradation

(2023) · doi:10.1073/pnas.2310664120 · Cited by 27

Regulation of PP2A, PP4, and PP6 holoenzyme assembly by carboxyl-terminal methylation

Lyons, S. P., Greiner, E. C., Cressey, L. E., Adamo, M. E., & Kettenbach, A. N. (2021) · Scientific Reports · doi:10.1038/s41598-021-02456-z · Cited by 27

How does the design of landmarks on a mobile map influence wayfinding experts’ spatial learning during a real-world navigation task?

Kapaj, A., Lanini-Maggi, S., Hilton, C., Cheng, B., & Fabrikant, S. I. (2023) · Cartography and Geographic Information Science · doi:10.1080/15230406.2023.2183525 · Cited by 24

Integrated Microbiome and Host Transcriptome Profiles Link Parkinson’s Disease to Blautia Genus: Evidence From Feces, Blood, and Brain

Guo, X., Tang, P., Hou, C., Chong, L., Zhang, X., Liu, P., Chen, L., Liu, Y., Zhang, L., & Li, R. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2022.875101 · Cited by 19

Effectiveness of Nutrient Management on Water Quality Improvement: A Synthesis on Nitrate-Nitrogen Loss from Subsurface Drainage

Liu, W., Yuan, Y., & Koropeckyj-Cox, L. (2021) · Transactions of the ASABE · doi:10.13031/trans.14078 · Cited by 17

Holosteans contextualize the role of the teleost genome duplication in promoting the rise of evolutionary novelties in the ray-finned fish innate immune system

Dornburg, A., Wcisel, D. J., Zapfe, K., Ferraro, E., Roupe-Abrams, L., Thompson, A. W., Braasch, I., Ota, T., & Yoder, J. A. (2021) · Immunogenetics · doi:10.1007/s00251-021-01225-6 · Cited by 16

Gut microbiota drives structural variation of exogenous probiotics to enhance colonization

Jiang, S., Huang, S., Zhang, Z., Ma, W., Han, Z., Song, Y., Huo, D., Cui, W., & Zhang, J. (2025) · Gut Microbes · doi:10.1080/19490976.2025.2503371 · Cited by 15

Short-Term Warming Induces Cyanobacterial Blooms and Antibiotic Resistance in Freshwater Lake, as Revealed by Metagenomics Analysis

Manna, B., Jay, E., Zhang, W., Zhou, X., Lyu, B., Thomas, G. M., & Singhal, N. (2024) · Water · doi:10.3390/w16182655 · Cited by 11

Moderators and processes of change in a pilot randomized controlled trial of acceptance-enhanced behavior therapy for trichotillomania in adolescents

Petersen, J. M., Capel, L. K., Levin, M. E., & Twohig, M. P. (2022) · Journal of Obsessive-Compulsive and Related Disorders · doi:10.1016/j.jocrd.2022.100757 · Cited by 10

Subtelomeric plasticity contributes to gene family expansion in the human parasitic flatworm Schistosoma mansoni

Brann, T., Beltramini, A., Chaparro, C., Berriman, M., Doyle, Sr., & Protasio, A. (2024) · BMC Genomics · doi:10.1186/s12864-024-10032-8 · Cited by 7

The acute effects of caffeine, creatine, and carbohydrate mouth rinse combined with conditioning activity on subsequent sports performance: a systematic review and Bayesian meta-analysis

Li, Y., Qiu, B., Kuai, H., Huang, K., Liu, H., Zhang, M., Yin, M., Zhang, Y., Deng, H., Zhong, Y., et al. (2025) · Frontiers in Nutrition · doi:10.3389/fnut.2025.1669004 · Cited by 4

Global and Educational Disparities in AI Integration: A Study of L2 Teacher Training and Usage Patterns

Davin, K. J., Kissau, S., Haudeck, H., Ade-Thurow, B., Gómez-Pereira, D., Oon, P. T., & Dornburg, A. (2026) · System · doi:10.1016/j.system.2025.103901 · Cited by 4

Genomic screening of 16 UK native bat species through conservationist networks uncovers coronaviruses with zoonotic potential

(2023) · doi:10.1101/2023.01.17.524183 · Cited by 4

Alteration to organismal behavior due to microplastic exposure

Barrick, A., Berg, M. B., & Hoang, T. C. (2025) · Environmental Research · doi:10.1016/j.envres.2025.121622 · Cited by 3

Single-molecule imaging of transcription dynamics, RNA localization and fate in human T cells

Lattanzio, M. V., Šoštarić, N., Kanagasabesan, N., Popović, B., Bradarić, A., Wardak, L., Guislain, A., Savakis, P., Tutucci, E., & Wolkers, M. C. (2025) · The EMBO Journal · doi:10.1038/s44318-025-00592-0 · Cited by 3

Classifying biophysical subpopulations of insulin secretory granules using quantitative whole-cell structure analysis

Chang, K., Deshmukh, A., Verma, R., Loconte, V., & White, K. L. (2026) · Structure · doi:10.1016/j.str.2026.03.005 · Cited by 3

Comprehensive bioinformatics analysis reveals prognostic significance and immunological roles of WNT gene family in breast cancer

Fariha, F. T. J., Fuad, M., Saha, C. S., Hossen, S., & Hossain, M. J. (2025) · Scientific Reports · doi:10.1038/s41598-025-13315-6 · Cited by 1

Subtelomeric plasticity contributes to gene family expansion in the human parasitic flatworm Schistosoma mansoni

Brann, T., Anna, B., Chaparro, C., Berriman, M., Doyle, S., & Protasio, A. (2023) · doi:10.21203/rs.3.rs-3408197/v1 · Cited by 1

A fast approach for structural and evolutionary analysis based on energetic profile protein comparison

Choopanian, P., Andressoo, J.-O., & Mirzaie, M. (2025) · Nature Communications · doi:10.1038/s41467-025-57374-9 · Cited by 1

Comparative Genomics-Based Evaluation of Lacticaseibacillus rhamnosus KFOM 0134 as a Probiotic against Staphylococcus aureus

Gwak, Y.-S., Suh, H.-Y., Yoon, H.-R., Kim, S., Bae, C.-I., & Kim, M.-J. (2026) · Journal of Microbiology and Biotechnology · doi:10.4014/jmb.2606.06012