Genomic Alterations in Coding Region of Tissue Culture Plants of Coffea arabica Obtained through Somatic Embryogenesis Revealed by Molecular Markers
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In Coffea arabica hybrids S.4202 and S.4932, somatic embryogenesis from foliar explants produced plants with high genetic similarity to mother plants, as shown by SRAP and SCoT markers.
“embryogenesis was achieved showing high genetic in both hybrids, with SRAP and SCoT marker analyses”
From Somaclonal Variation and Clonal Fidelity in Commercial Micropropagation: Challenges and Perspectives (2025) · cites this paper as [71]
Cites
A Revised Medium for Rapid Growth and Bio Assays with Tobacco Tissue Cultures
Murashige, T., & Skoog, F. K. (1962) · Physiologia Plantarum · doi:10.1111/j.1399-3054.1962.tb08052.x · Cited by 67,420 · see citing works
Numerical Taxonomy: The Principles and Practice of Numerical Classification
Sneath, P. H. A., & Sokal, R. R. (1973) · CERN Document Server (European Organization for Nuclear Research) · Cited by 5,094 · see citing works
Li, G., & Quirós, C. F. (2001) · Theoretical and Applied Genetics · doi:10.1007/s001220100570 · Cited by 1,528 · see citing works
A new system of comparing PCR primers applied to ISSR fingerprinting of potato cultivars
Prevost, A., & Wilkinson, M. J. (1999) · Theoretical and Applied Genetics · doi:10.1007/s001220051046 · Cited by 1,373 · see citing works
Collard, B. C. Y., & Mackill, D. J. (2008) · Plant Molecular Biology Reporter · doi:10.1007/s11105-008-0060-5 · Cited by 934 · see citing works
Epigenetic aspects of somaclonal variation in plants
Kaeppler, S. M., Kaeppler, H. F., & Rhee, Y. (2000) · Plant Molecular Biology · doi:10.1023/a:1006423110134 · Cited by 743 · see citing works
Somaclonal Variation in Plants: Causes and Detection Methods
Bairu, M. W., Aremu, A. O., & Van Staden, J. (2011) · Plant Growth Regulation · doi:10.1007/s10725-010-9554-x · Cited by 674 · see citing works
Kang, J., Park, J., Choi, H., Burla, B., Kretzschmar, T., Lee, Y., & Martinoia, E. (2011) · The Arabidopsis Book · doi:10.1199/tab.0153 · Cited by 575 · see citing works
Somaclonal variations and their applications in horticultural crops improvement
Krishna, H., Alizadeh, M., Singh, D., Singh, U., Chauhan, N., Eftekhari, M., & Sadh, R. K. (2016) · 3 Biotech · doi:10.1007/s13205-016-0389-7 · Cited by 436 · see citing works
Genetic stability of micropropagated almond plantlets, as assessed by RAPD and ISSR markers
Martins, M., Sarmento, D., & Oliveira, M. M. (2004) · Plant Cell Reports · doi:10.1007/s00299-004-0870-3 · Cited by 332 · see citing works
Genome-wide analysis of DNA methylation patterns
Zilberman, D., & Henikoff, S. (2007) · Development · doi:10.1242/dev.001131 · Cited by 275 · see citing works
Involvement of plant C2H2-type zinc finger transcription factors in stress responses
Kiełbowicz‐Matuk, A. (2011) · Plant Science · doi:10.1016/j.plantsci.2011.11.015 · Cited by 271 · see citing works
Neelakandan, A. K., & Wang, K. (2011) · Plant Cell Reports · doi:10.1007/s00299-011-1202-z · Cited by 255 · see citing works
The Arabidopsis SERRATE Gene Encodes a Zinc-Finger Protein Required for Normal Shoot Development
Prigge, M. J., & Wagner, D. (2001) · The Plant Cell · doi:10.1105/tpc.010095 · Cited by 198 · see citing works
Microsatellite DNA somaclonal variation in micropropagated trembling aspen (Populus tremuloides)
Rahman, M., & Rajora, O. P. (2001) · Plant Cell Reports · doi:10.1007/s002990100365 · Cited by 170 · see citing works
Salimi, F., Shekari, F., & Hamzei, J. (2015) · Acta Physiologiae Plantarum · doi:10.1007/s11738-015-2023-4 · Cited by 167 · see citing works
Fuentes, S. R. L., Calheiros, M. B. P., Filho, J. M., & Vieira, L. G. E. (2000) · Plant Cell Tissue and Organ Culture (PCTOC) · doi:10.1023/a:1006474324652 · Cited by 144 · see citing works
Abnormalities in somatic embryogenesis caused by 2,4-D: an overview
Garcia, C., de Almeida, A.-A. F., Costa, M. G. C., Britto, D. S., Valle, R. R., Royaert, S., & Marelli, J. (2019) · Plant Cell Tissue and Organ Culture (PCTOC) · doi:10.1007/s11240-019-01569-8 · Cited by 142 · see citing works
Recent Advances in the Genetic Transformation of Coffee
Mishra, M. K., & Slater, A. (2012) · Biotechnology Research International · doi:10.1155/2012/580857 · Cited by 130 · see citing works
Self-citationBhatia, R., Singh, K. P., Sharma, T. R., & Jhang, T. (2010) · Plant Cell Tissue and Organ Culture (PCTOC) · doi:10.1007/s11240-010-9806-5 · Cited by 118 · see citing works
STAMENLESS 1, encoding a single C2H2 zinc finger protein, regulates floral organ identity in rice
Xiao, H., Tang, J., Li, Y., Wang, W., Li, X., Liang, J. H., Xie, R., Luo, H., Zhao, X. F., Meng, Z., et al. (2009) · The Plant Journal · doi:10.1111/j.1365-313x.2009.03913.x · Cited by 114 · see citing works
Hajibarat, Z., Saidi, A., Hajibarat, Z., & Talebı, R. (2015) · Physiology and Molecular Biology of Plants · doi:10.1007/s12298-015-0306-2 · Cited by 106 · see citing works
Genetic stability in micropropagated Cleome gynandra revealed by SCoT analysis
Rathore, N. S., Manoj, K., Phulwaria, M., Rathore, N., & Shekhawat, N. S. (2013) · Acta Physiologiae Plantarum · doi:10.1007/s11738-013-1429-0 · Cited by 104 · see citing works
Etienne, H., & Bertrand, B. (2003) · Tree Physiology · doi:10.1093/treephys/23.6.419 · Cited by 100 · see citing works
Genetic homogeneity of guava plants derived from somatic embryogenesis using SSR and ISSR markers
Manoj, K., Phulwaria, M., Harish, Gupta, A. K., Shekhawat, N. S., & Jaiswal, U. (2012) · Plant Cell Tissue and Organ Culture (PCTOC) · doi:10.1007/s11240-012-0190-1 · Cited by 96 · see citing works
Bobadilla Landey, R., Cenci, A., Georget, F., Bertrand, B., Camayo, G., Dechamp, E., Herrera, J. C., Santoni, S., Lashermes, P., Simpson, J., et al. (2013) · PLoS ONE · doi:10.1371/journal.pone.0056372 · Cited by 95 · see citing works
Induction of somatic embryogenesis in woody plants
Isah, T. (2016) · Acta Physiologiae Plantarum · doi:10.1007/s11738-016-2134-6 · Cited by 91 · see citing works
Marum, L., Rocheta, M., Marôco, J. P., Oliveira, M. M., & Miguel, C. M. G. (2009) · Plant Cell Reports · doi:10.1007/s00299-008-0668-9 · Cited by 78 · see citing works
Thakur, J., Dwivedi, M. D., Sourabh, P., Uniyal, P. L., & Pandey, A. K. (2016) · PLOS ONE · doi:10.1371/journal.pone.0159050 · Cited by 77 · see citing works
Kumar, S., Mangal, M., Dhawan, A. K., & Singh, N. (2011) · Acta Physiologiae Plantarum · doi:10.1007/s11738-011-0767-z · Cited by 74 · see citing works
Zang, D., Li, H., Xu, H., Zhang, W., Zhang, Y., Shi, X., & Wang, Y. (2016) · Frontiers in Plant Science · doi:10.3389/fpls.2016.01272 · Cited by 71 · see citing works
Prado, M. J., Rodriguez, E., Rey, L., González, M. V., Santos, C., & Rey, M. (2010) · Plant Cell Tissue and Organ Culture (PCTOC) · doi:10.1007/s11240-010-9753-1 · Cited by 70 · see citing works
Chaetomium endophytes: a repository of pharmacologically active metabolites
Fatima, N., Muhammad, S. A., Khan, I., Qazi, M. A., Shahzadi, I., Mumtaz, A., Hashmı, M. A., Khan, A. K., & Ismail, T. (2016) · Acta Physiologiae Plantarum · doi:10.1007/s11738-016-2138-2 · Cited by 62 · see citing works
Establishment of genetic fidelity of In vitro-raised Lilium bulblets through rapd markers
Varshney, A., Lakshmikumaran, M., Srivastava, P. S., & Dhawan, V. (2001) · In Vitro Cellular & Developmental Biology - Plant · doi:10.1007/s11627-001-0040-z · Cited by 59 · see citing works
Kuchař, M., & Fajkus, J. (2004) · FEBS Letters · doi:10.1016/j.febslet.2004.11.021 · Cited by 57 · see citing works
Application of rapd in the determination of genetic fidelity in micropropagated Drosera plantlets
Kawiak, A., & Łojkowska, E. (2004) · In Vitro Cellular & Developmental Biology - Plant · doi:10.1079/ivp2004577 · Cited by 57 · see citing works
Wang, Y., Dou, D., Wang, X., Li, A., Sheng, Y., Hua, C., Cheng, B., Chen, X., Zheng, X., & Wang, Y. (2009) · Microbial Pathogenesis · doi:10.1016/j.micpath.2009.04.013 · Cited by 55 · see citing works
Etienne, H., & Bertrand, B. (2001) · Tree Physiology · doi:10.1093/treephys/21.14.1031 · Cited by 55 · see citing works
Micropropagation of mature Quercus ilex L. trees by axillary budding
Martínez, M. T., Corredoira, E., Viéitez, A. M., Cernadas, M. J., Montenegro, R., Ballester, A., Vieitez, F. J., & José, M. C. S. (2017) · Plant Cell Tissue and Organ Culture (PCTOC) · doi:10.1007/s11240-017-1300-x · Cited by 48 · see citing works
Dann, A. L., & Wilson, C. R. (2011) · Plant Cell Reports · doi:10.1007/s00299-010-0983-9 · Cited by 47 · see citing works
Nookaraju, A., & Agrawal, D. C. (2011) · South African Journal of Botany · doi:10.1016/j.sajb.2011.08.009 · Cited by 44 · see citing works
Brito, G., Lopes, T., Loureiro, J., Rodriguez, E., & Santos, C. (2010) · Trees · doi:10.1007/s00468-010-0442-9 · Cited by 44 · see citing works
Carra, A., Sajeva, M., Abbate, L., Siragusa, M., Sottile, F., & Carimi, F. (2011) · Plant Cell Tissue and Organ Culture (PCTOC) · doi:10.1007/s11240-011-0102-9 · Cited by 43 · see citing works
Advances in coffee tissue culture and its practical applications
Santana‐Buzzy, N., Rojas-Herrera, R. A., Galaz-Ávalos, R. M., Ku-Cauich, J. R., Mijangos-Cortés, J. O., Gutiérrez-Pacheco, L. C., Canto‐Flick, A., Quiroz‐Figueroa, F. R., & Loyola-Vargas, V. M. (2007) · In Vitro Cellular & Developmental Biology - Plant · doi:10.1007/s11627-007-9074-1 · Cited by 41 · see citing works
Razafinarivo, N. J., Guyot, R., Davis, A. P., Couturon, E., Hamon, S., Crouzillat, D., Rigoreau, M., Tranchant‐Dubreuil, C., Poncet, V., de Kochko, A., et al. (2012) · Annals of Botany · doi:10.1093/aob/mcs283 · Cited by 39 · see citing works
Konar, S., Karmakar, J., Ray, A., Adhikari, S., & Bandyopadhyay, T. K. (2018) · PLoS ONE · doi:10.1371/journal.pone.0202324 · Cited by 39 · see citing works
Picrorhiza kurrooa: current status and tissue culture mediated biotechnological interventions
Rawat, B., Rawat, J. M., Mishra, S., & Mishra, S. N. (2012) · Acta Physiologiae Plantarum · doi:10.1007/s11738-012-1069-9 · Cited by 35 · see citing works
Genetic molecular analysis of Coffea arabica (Rubiaceae) hybrids using SRAP markers.
Mishra, M. K., Suresh, N., Bhat, A. M., Suryaprakash, N., Kumar, S. S., Kumar, A., & Jayarama (2011) · PubMed · Cited by 35 · see citing works
Self-citationJingade, P., Huded, A. K. C., Kosaraju, B., & Mishra, M. K. (2019) · Journal of Crop Improvement · doi:10.1080/15427528.2019.1592050 · Cited by 29 · see citing works
Self-citationKolodny, G. M. (2018) · CRC Press eBooks · doi:10.1201/9781351071925 · Cited by 29 · see citing works
Rathwell, R., Popova, E., Shukla, M. R., & Saxena, P. K. (2016) · Canadian Journal of Forest Research · doi:10.1139/cjfr-2016-0166 · Cited by 27 · see citing works
Adventitious shoot organogenesis from leaf and petiole explants of European hazelnut
Silvestri, C., Cristofori, V., Ceccarelli, M., Cáceres, M. E., Lacuesta, J. E., & Rugini, E. (2016) · Plant Cell Tissue and Organ Culture (PCTOC) · doi:10.1007/s11240-016-0976-7 · Cited by 24 · see citing works
Bayraktar, M., Hayta, Ş., Parlak, S., & Gürel, A. (2015) · Trees · doi:10.1007/s00468-015-1179-2 · Cited by 23 · see citing works
Evaluation of genetic stability in cryopreserved Solanum tuberosum
Zarghami, R., Pirseyedi, M., Hasrak, S., & Sardrood, B. P. (2008) · AFRICAN JOURNAL OF BIOTECHNOLOGY · doi:10.4314/ajb.v7i16.59159 · Cited by 23 · see citing works
In vitro studies to produce double haploid in Indica hybrid rice
Premvaranon, P., Vearasilp, S., Thanapornpoonpong, S.-N., Karladee, D., & Gorinstein, S. (2011) · Biologia · doi:10.2478/s11756-011-0129-8 · Cited by 22 · see citing works
Muthukumar, M., Kumar, T. S., & Rao, M. V. (2016) · South African Journal of Botany · doi:10.1016/j.sajb.2016.07.017 · Cited by 21 · see citing works
Genetic Diversity Among Indian Coffee Cultivars Determined via Molecular Markers
Mishra, M. K., Sandhyarani, N., Suresh, N., Kumar, S., Soumya, P. R., Yashodha, M. H., Bhat, A., & Jayarama (2012) · Journal of Crop Improvement · doi:10.1080/15427528.2012.696085 · Cited by 20 · see citing works
Self-citationBychappa, M., Kosaraju, B., Mishra, M. K., & Raghuramulu, Y. (2017) · Open Life Sciences · doi:10.1515/biol-2017-0001 · Cited by 20 · see citing works
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Mishra, M. K., Tornincasa, P., Nardi, B. D., Asquini, E., Dreos, R., Terra, L. D., Rathinavelu, R., Rovelli, P., Pallavicini, A., & Graziosi, G. (2011) · Journal of Crop Science and Biotechnology · doi:10.1007/s12892-010-0035-6 · Cited by 19 · see citing works
Self-citationSeth, S., Rath, S. C., Rout, G. R., & Panigrahi, J. (2016) · Plant Biosystems - An International Journal Dealing with all Aspects of Plant Biology · doi:10.1080/11263504.2016.1211193 · Cited by 17 · see citing works
Mishra, M. K., Nishani, S., Gowda, M., Padmajyothi, D., Suresh, N., Sreenath, H. L., & Raghuramulu, Y. (2014) · Plant Breeding and Seed Science · doi:10.1515/plass-2015-0011 · Cited by 16 · see citing works
Self-citationLi, X., Wang, X., Chunyan, L., Yang, J., Suihan, C., Dai, Z., Mei, P., & Huang, C. (2014) · Plant Growth Regulation · doi:10.1007/s10725-014-9892-1 · Cited by 14 · see citing works
Haddad, B., Carra, A., Saadi, A., Haddad, N., Mercati, F., Gristina, A. S., Boukhalfa, S., Djillali, A., & Carimi, F. (2018) · Plant Biosystems - An International Journal Dealing with all Aspects of Plant Biology · doi:10.1080/11263504.2017.1306002 · Cited by 13 · see citing works
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Söndahl, M. R., & Baumann, T. W. (2001) · doi:10.1002/9780470690499.ch10 · Cited by 13 · see citing works
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Liang-jun, Z. (2012) · Zhongguo nongye Kexue · Cited by 3 · see citing works
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Self-citationTisarum, R., Samphumphuang, T., Prommee, W., Mongkolsiriwatana, C., & Cha–um, S. (2020) · Notulae Botanicae Horti Agrobotanici Cluj-Napoca · doi:10.15835/nbha48412034 · Cited by 4 · see citing works
Oliveira, J. P. D. M., Sanglard, N. A., Ferreira, A., & Clarindo, W. R. (2021) · Forests · doi:10.3390/f12111536 · Cited by 4 · see citing works
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- Authors
- Bychappa, M., Mishra, M. K., Jingade, P., & Huded, A. K. C.
- Corresponding author
- Mishra, Manoj Kumar
- Venue
- Plant Cell, Tissue and Organ Culture (PCTOC)
- Published
- 2019-08-08
- Volume
- 139
- Issue
- 1
- Pages
- 91-103
- ISSN
- 0167-6857 (ISSN-L)
- 1573-5044
- OpenAlex
- W2967776223
- Cited by
- 13
- References
- 67
- Citations by year
- 2026: 1 · 2025: 4 · 2024: 1 · 2023: 4 · 2021: 1 · 2020: 2
- FWCI
- 0.25
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Plant Cell Tissue and Organ Culture (PCTOC) (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Plant tissue culture and regeneration
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Genetic and Mutation Studies
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Molecular Biology Research
- Keywords
- Coffea arabica, somatic embryogenesis, in vitro regeneration, somaclonal variation, genetic fidelity, SRAP markers, SCoT markers, 2,4-D, callus induction, zinc finger proteins, micropropagation
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