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Altering the Intestinal Microbiota during a Critical Developmental Window Has Lasting Metabolic Consequences
Open accessAbstract
Acquisition of the intestinal microbiota begins at birth, and a stable microbial community develops from a succession of key organisms. Disruption of the microbiota during maturation by low-dose antibiotic exposure can alter host metabolism and adiposity. We now show that low-dose penicillin (LDP), delivered from birth, induces metabolic alterations and affects ileal expression of genes involved in immunity. LDP that is limited to early life transiently perturbs the microbiota, which is sufficient to induce sustained effects on body composition, indicating that microbiota interactions in infancy may be critical determinants of long-term host metabolic effects. In addition, LDP enhances the effect of high-fat diet induced obesity. The growth promotion phenotype is transferrable to germ-free hosts by LDP-selected microbiota, showing that the altered microbiota, not antibiotics per se, play a causal role. These studies characterize important variables in early-life microbe-host metabolic interaction and identify several taxa consistently linked with metabolic alterations. PAPERCLIP:
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“A causal role for the involvement of gut microbes is in part based on the fulfillment of one of Koch’s postulates - namely, the transmission of a disease related phenotype with transplantation of gut microbial organisms to a new host (Cho and Blaser, 2012; Cox et al., 2014; Dumas et al., 2006; Gregory et al., 2015; Koch, 1880; Sandhu and Chase, 1986).”
From Non-lethal Inhibition of Gut Microbial Trimethylamine Production for the Treatment of Atherosclerosis (2015) · cites this paper as Cox et al., 2014
In the citing paper
“Nonetheless, the gut microbiome is known to be remarkably dynamic and adaptive, including changes in response to different dietary inputs, as well as the presence versus absence of distinct diseases (Cox et al., 2014; Koren et al., 2011; Wu et al., 2011).”
From Non-lethal Inhibition of Gut Microbial Trimethylamine Production for the Treatment of Atherosclerosis (2015) · cites this paper as Cox et al., 2014
In the citing paper
“Similarly, recent studies by Blaser and colleagues (34) show that affecting microbiota in early windows of critical development can affect metabolism long term.”
From Transmission of Atherosclerosis Susceptibility with Gut Microbial Transplantation (2015) · cites this paper as [34]
In the citing paper
“Specifically, they have identified several taxa transiently disrupted after low-dose penicillin administration at mouse weaning age to be linked to persistent metabolic alterations such as enhanced dietary-induced fat mass accumulation and decreased intestinal-based immunity (34).”
From Transmission of Atherosclerosis Susceptibility with Gut Microbial Transplantation (2015) · cites this paper as [34]
In the citing paper
“FMT might modulate obesity and metabolism in humans and mice 29,30 , ameliorate metabolic syndrome in patients 31 , and contribute to the treatment of refractory immune checkpoint inhibitor (ICI)-associated colitis 32 and recurrent infections by Clostridium difficile 33 .”
From Healthspan and lifespan extension by fecal microbiota transplantation into progeroid mice (2019) · cites this paper as [30]
In the citing paper
“low dose penicillin (LDP) administration was shown to induce stronger physiological alterations if administered from the beginning of gestation, rather than at weaning”
From Antibiotic-Induced Changes in the Intestinal Microbiota and Disease (2016) · cites this paper as [91]
In the citing paper
“while the expression of intestinal immune genes coding for proteins such asRegIIIγ, β-defensins, and IL-17 was decreased.”
From Antibiotic-Induced Changes in the Intestinal Microbiota and Disease (2016) · cites this paper as [91]
In the citing paper
“following early LDP administration, body mass and fat content were increased in adulthood”
From Antibiotic-Induced Changes in the Intestinal Microbiota and Disease (2016) · cites this paper as [91]
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Cites
STAR: ultrafast universal RNA-seq aligner
Dobin, A., Davis, C. A., Schlesinger, F., Drenkow, J., Zaleski, C., Jha, S., Batut, P., Chaisson, M., & Gingeras, T. R. (2013) · Bioinformatics · doi:10.1093/bioinformatics/bts635 · Cited by 51,709
QIIME allows analysis of high-throughput community sequencing data
Caporaso, J. G., Kuczynski, J., Stombaugh, J., Bittinger, K., Bushman, F. D., Costello, E. K., Fierer, N., Peña, A. G., Goodrich, J. K., Gordon, J. I., et al. (2010) · Nature Methods · doi:10.1038/nmeth.f.303 · Cited by 34,887
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
Liao, Y., Smyth, G. K., & Shi, W. (2014) · Bioinformatics · doi:10.1093/bioinformatics/btt656 · Cited by 27,219
vegan: Community Ecology Package
Oksanen, J., Simpson, G. L., Blanchet, F. G., Kindt, R., Legendre, P., Minchin, P. R., O’Hara, R. B., Sólymos, P., Stevens, M. H. H., Szöcs, E., et al. (2001) · doi:10.32614/cran.package.vegan · Cited by 27,099
HTSeq—a Python framework to work with high-throughput sequencing data
Anders, S., Pyl, P. T., & Huber, W. (2015) · Bioinformatics · doi:10.1093/bioinformatics/btu638 · Cited by 21,464
Metagenomic biomarker discovery and explanation
Segata, N., Izard, J., Waldron, L., Gevers, D., Miropolsky, L., Garrett, W. S., & Huttenhower, C. (2011) · Genome Biology · doi:10.1186/gb-2011-12-6-r60 · Cited by 16,192
Differential expression analysis for sequence count data
Anders, S., & Huber, W. (2010) · Genome Biology · doi:10.1186/gb-2010-11-10-r106 · Cited by 15,581
A new method for non-parametric multivariate analysis of variance
Anderson, M. J. (2001) · Austral Ecology · doi:10.1111/j.1442-9993.2001.01070.pp.x · Cited by 13,828
An obesity-associated gut microbiome with increased capacity for energy harvest
Turnbaugh, P. J., Ley, R. E., Mahowald, M. A., Magrini, V., Mardis, E. R., & Gordon, J. I. (2006) · Nature · doi:10.1038/nature05414 · Cited by 12,444
Smyth, G. K. (2004) · Statistical Applications in Genetics and Molecular Biology · doi:10.2202/1544-6115.1027 · Cited by 11,829
Flagged first, then by citations
Research works printed but not linked: 2
- Beijerinck, 1901, Sur les ferments lactiques de l’industrie, Archives Néerlandaises des Sciences Exactes et Naturelles, 6, 212
- Leidy, 1849, On the existence of entophyta in healthy animals, as a natural condition, Proc. Acad. Nat. Sci. Philadelphia, 4, 225
Cited by
Sorted by citations
Items 501–600 of 1,002
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Quigley, E. M. M., & Gajula, P. (2020) · F1000Research · doi:10.12688/f1000research.20204.1 · Cited by 69
Zhang, X., Borbet, T. C., Fallegger, A., Wipperman, M. F., Blaser, M. J., & Mueller, A. (2021) · mBio · doi:10.1128/mbio.03335-20 · Cited by 70
Self-citationNeonatal exposure to a wild-derived microbiome protects mice against diet-induced obesity
Hild, B., Dreier, M. S., Oh, J. H., McCulloch, J. A., Badger, J. H., Guo, J., Thefaine, C. E., Umarova, R., Hall, K. D., Gavrilova, O., et al. (2021) · Nature Metabolism · doi:10.1038/s42255-021-00439-y · Cited by 68
Luchen, C. C., Chibuye, M., Spijker, R., Simuyandi, M., Chisenga, C. C., Bosomprah, S., Chilengi, R., Schultsz, C., Mende, D. R., & Harris, V. (2023) · PLoS Medicine · doi:10.1371/journal.pmed.1004235 · Cited by 74
García‐Mantrana, I., & Collado, M. C. (2016) · Molecular Nutrition & Food Research · doi:10.1002/mnfr.201501018 · Cited by 65
Zou, J., Ngo, V. L., Wang, Y., Wang, Y., & Gewirtz, A. T. (2022) · Cell Host & Microbe · doi:10.1016/j.chom.2022.10.014 · Cited by 67
Huang, H., Jiang, J., Wang, X., Jiang, K., & Cao, H. (2024) · EClinicalMedicine · doi:10.1016/j.eclinm.2024.102428 · Cited by 71
Jameson, K. G., Kazmi, S. A., Ohara, T. E., Son, C., Yu, K. B., Mazdeyasnan, D., Leshan, E., Vuong, H. E., Paramo, J., Lopez-Romero, A., et al. (2024) · iScience · doi:10.1016/j.isci.2024.111699 · Cited by 88
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Hov, J., & Karlsen, T. (2017) · Seminars in Liver Disease · doi:10.1055/s-0037-1608801 · Cited by 65
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Crommen, S., & Simon, M. (2017) · Genes · doi:10.3390/genes9010010 · Cited by 69
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Leong, K. S. W., McLay, J., Derraik, J. G. B., Gibb, S., Shackleton, N., Taylor, R. W., Glover, M., Audas, R., Taylor, B. J., Milne, B. J., et al. (2020) · JAMA Network Open · doi:10.1001/jamanetworkopen.2019.19681 · Cited by 71
Gut microbiome and osteoporosis
Li, S., Mao, Y., Zhou, F., Yang, H., Shi, Q., & Meng, B. (2020) · Bone and Joint Research · doi:10.1302/2046-3758.98.bjr-2020-0089.r1 · Cited by 66
The intestinal microbiome and skeletal fitness: Connecting bugs and bones
Charles, J. F., Ermann, J., & Aliprantis, A. O. (2015) · Clinical Immunology · doi:10.1016/j.clim.2015.03.019 · Cited by 65
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Zhang, J., Lu, Y., Wang, Y., Ren, X., & Han, J. (2018) · Intractable & Rare Diseases Research · doi:10.5582/irdr.2018.01055 · Cited by 67
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Chen, L., Xu, J. Y., Soh, S. E., Aris, I. M., Tint, M. T., Gluckman, P. D., Tan, K. H., Shek, L. P., Chong, Y. S., Yap, F. K. P., et al. (2020) · International Journal of Obesity · doi:10.1038/s41366-020-0572-0 · Cited by 65
Leonard, M. M., Camhi, S. S., Huedo-Medina, T. B., & Fasano, A. (2015) · Nutrients · doi:10.3390/nu7115470 · Cited by 69
Monk, J. M., Wu, W., Lepp, D., Wellings, H. R., Hutchinson, A. L., Liddle, D. M., Gräf, D., Pauls, K. P., Robinson, L. E., & Power, K. A. (2019) · The Journal of Nutritional Biochemistry · doi:10.1016/j.jnutbio.2019.04.009 · Cited by 66
Lima, S. F., Bicalho, M. L. S., & Bicalho, R. C. (2019) · PLoS ONE · doi:10.1371/journal.pone.0208014 · Cited by 64
Li, R., Yao, Y., Gao, P., & Bu, S. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2020.555293 · Cited by 64
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Kalia, V. C., Shim, W. Y., Patel, S. K. S., Gong, C., & Lee, J.-K. (2022) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2022.155300 · Cited by 66
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Lynn, M. A., Eden, G. L., Ryan, F. J., Bensalem, J., Wang, X., Blake, S. J., Choo, J. M., Tee, Y. C., Sribnaia, A., James, J., et al. (2021) · Cell Reports · doi:10.1016/j.celrep.2021.109564 · Cited by 62
Aasmets, O., Krigul, K. L., Lüll, K., Metspalu, A., & Org, E. (2022) · Nature Communications · doi:10.1038/s41467-022-28464-9 · Cited by 60
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Stegemann, R., & Buchner, D. A. (2015) · Seminars in Cell and Developmental Biology · doi:10.1016/j.semcdb.2015.04.007 · Cited by 65
Rodríguez-Nunez, I., Caluag, T., Kirby, K., Rudick, C. N., Dziarski, R., & Gupta, D. (2017) · Scientific Reports · doi:10.1038/s41598-017-00484-2 · Cited by 63
Shi, Y., Zhao, X., Zhao, J., Zhang, H., Zhai, Q., Narbad, A., & Chen, W. (2018) · Journal of Applied Microbiology · doi:10.1111/jam.13687 · Cited by 66
Schulfer, A. F., Schlüter, J., Zhang, Y., Brown, Q., Pathmasiri, W., McRitchie, S., Sumner, S., Li, H., Xavier, J. B., & Blaser, M. J. (2019) · The ISME Journal · doi:10.1038/s41396-019-0349-4 · Cited by 63
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Woo, J. G., & Martin, L. J. (2015) · Current Obesity Reports · doi:10.1007/s13679-015-0148-9 · Cited by 60
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Davidson, G. L., Somers, S. E., Wiley, N., Johnson, C. N., Reichert, M. S., Ross, R. P., Stanton, C., & Quinn, J. L. (2021) · Journal of Animal Ecology · doi:10.1111/1365-2656.13428 · Cited by 57
van Dorst, J. M., Tam, R. Y., & Ooi, C. Y. (2022) · Nutrients · doi:10.3390/nu14030480 · Cited by 65
Zhai, Z., Yang, Y., Chen, S., & Wu, Z. (2024) · Environmental Health Perspectives · doi:10.1289/ehp13913 · Cited by 69
The Gut Bacteria-Driven Obesity Development
Compare, D., Rocco, A., Sanduzzi‐Zamparelli, M., & Nardone, G. (2016) · Digestive Diseases · doi:10.1159/000443356 · Cited by 61
Poole, A. C., Pischel, L., Ley, C., Suh, G. A., Goodrich, J. K., Haggerty, T. D., Ley, R. E., & Parsonnet, J. (2016) · mSphere · doi:10.1128/msphere.00056-15 · Cited by 63
Specific synbiotics in early life protect against diet‐induced obesity in adult mice
Mischke, M., Arora, T., Tims, S., Engels, E., Sommer, N., van Limpt, K., Baars, A., Oozeer, R., Oosting, A., Bäckhed, F., et al. (2018) · Diabetes Obesity and Metabolism · doi:10.1111/dom.13240 · Cited by 59
Kassotis, C. D., & Stapleton, H. M. (2019) · Frontiers in Endocrinology · doi:10.3389/fendo.2019.00039 · Cited by 61
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Krautkramer, K. A., Dhillon, R. S., Denu, J. M., & Carey, H. V. (2017) · Translational research · doi:10.1016/j.trsl.2017.08.005 · Cited by 61
Ribó, S., Sánchez‐Infantes, D., Martínez-Guinó, L., García‐Mantrana, I., Ramon‐Krauel, M., Tondo, M., Arning, E., Nofrarías, M., Osorio-Conles, Ó., Fernández-Pérez, A., et al. (2021) · Science Translational Medicine · doi:10.1126/scitranslmed.abb0322 · Cited by 60
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Özkul, C., Ruiz, V. E., Battaglia, T., Xu, J., Baudron, C. R., Cadwell, K., Perez-Perez, G. I., & Blaser, M. J. (2020) · Genome Medicine · doi:10.1186/s13073-020-00764-z · Cited by 57
Self-citationSystematic Review of Beef Protein Effects on Gut Microbiota: Implications for Health
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Duvallet, C., Zellmer, C., Panchal, P., Budree, S., Osman, M., & Alm, E. J. (2019) · PLoS ONE · doi:10.1371/journal.pone.0222881 · Cited by 59
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Imdad, S., Lim, W., Kim, J., & Kang, C. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms23052679 · Cited by 60
Li, P., Chang, X., Chen, X., Wang, C., Shang, Y., Zheng, D., & Qi, K. (2022) · Annals of Clinical Microbiology and Antimicrobials · doi:10.1186/s12941-022-00535-1 · Cited by 60
Moore, M. N. (2015) · Environmental Research · doi:10.1016/j.envres.2015.03.015 · Cited by 59
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Lemaire, M., Dou, S., Cahu, A., Formal, M., Normand, L. L., Rome, V., Nogret, I., Ferret‐Bernard, S., Rhimi, M., Cuinet, I., et al. (2018) · Scientific Reports · doi:10.1038/s41598-018-29971-w · Cited by 58
Li, J., Dong, T., Keerthisinghe, T. P., Chen, H., Li, M., Chu, W., Yang, J., Hu, Z., Snyder, S. A., Dong, W., et al. (2020) · Journal of Hazardous Materials · doi:10.1016/j.jhazmat.2020.123061 · Cited by 55
López‐Siles, M., Corral‐Lugo, A., & McConnell, M. J. (2020) · FEMS Microbiology Reviews · doi:10.1093/femsre/fuaa054 · Cited by 53
Mueller, N., Differding, M. K., Østbye, T., Hoyo, C., & Benjamin‐Neelon, S. (2020) · BJOG An International Journal of Obstetrics & Gynaecology · doi:10.1111/1471-0528.16633 · Cited by 61
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Lieber, A. D., Beier, U. H., Xiao, H., Wilkins, B. J., Jiao, J., Li, X. S., Schugar, R. C., Strauch, C., Wang, Z., Brown, J. M., et al. (2018) · The FASEB Journal · doi:10.1096/fj.201701586r · Cited by 58
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Sanchez, S. D., Perrotta, A. R., Rockafellow, I., Alm, E. J., Okimoto, R., Hawken, R., & Hanning, I. B. (2019) · PLoS ONE · doi:10.1371/journal.pone.0216080 · Cited by 56
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Metadata
- Authors
- Cox, L. M., Yamanishi, S., Sohn, J., Alekseyenko, A. V., Leung, J. M., Cho, I., Kim, S. G., Li, H., Gao, Z., Mahana, D., Zárate Rodriguez, J. G., Rogers, A. B., Robine, N., Loke, P., & Blaser, M. J.
- Affiliations
- NYU Langone Health (US)
- Tufts University (US)
- New York Genome Center (US)
- VA NY Harbor Healthcare System (US)
- Corresponding author
- Blaser, Martin J.
- ORCID
- Venue
- Cell
- Publisher
- Elsevier BV
- Published
- 2014-08
- Volume
- 158
- Issue
- 4
- Pages
- 705-721
- ISSN
- 0092-8674 (ISSN-L)
- PMC
- PMC4134513
- OpenAlex
- W2053039168
- Cited by
- 1,859
- References
- 81
- Citations by year
- 2026: 74 · 2025: 119 · 2024: 137 · 2023: 145 · 2022: 177 · 2021: 194 · 2020: 182 · 2019: 163 · 2018: 182 · 2017: 177 · 2016: 161 · 2015: 124 · 2014: 20
- FWCI
- 65.83
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Cell (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- Rutgers University Community Repository (Rutgers University) (submittedVersion)
- Funders
- NYU Langone Medical Center
- New York Genome Center
- National Institutes of Health
- National Cancer Institute (P30CA016087)
- National Institute of Allergy and Infectious Diseases (R01AI093811)
- National Institute of Diabetes and Digestive and Kidney Diseases (R01DK090989)
- National Center for Research Resources (UL1RR029893)
- Argonne National Laboratory
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Health Sciences › Medicine › Endocrinology, Diabetes and Metabolism › Adipokines, Inflammation, and Metabolic Diseases
- Life Sciences › Agricultural and Biological Sciences › Animal Science and Zoology › Animal Nutrition and Physiology
- Keywords
- gut microbiota, early-life antibiotic exposure, microbiota disruption, body composition, obesity, high-fat diet, ileal gene expression, immunity, germ-free mice, host-microbe metabolic interactions, developmental programming
- MeSH terms
- Animals, Anti-Bacterial Agents, Bacteria, Disease Models, Animal, Female, Intestinal Mucosa, Intestines, Male, Mice, Inbred C57BL, Obesity, Penicillins, Mice, Microbiota
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