The DOI matches its Crossref record; 81 of the 81 references it cites were found in a registry or an index.
Altering the Intestinal Microbiota during a Critical Developmental Window Has Lasting Metabolic Consequences
Open accessAbstract
Acquisition of the intestinal microbiota begins at birth, and a stable microbial community develops from a succession of key organisms. Disruption of the microbiota during maturation by low-dose antibiotic exposure can alter host metabolism and adiposity. We now show that low-dose penicillin (LDP), delivered from birth, induces metabolic alterations and affects ileal expression of genes involved in immunity. LDP that is limited to early life transiently perturbs the microbiota, which is sufficient to induce sustained effects on body composition, indicating that microbiota interactions in infancy may be critical determinants of long-term host metabolic effects. In addition, LDP enhances the effect of high-fat diet induced obesity. The growth promotion phenotype is transferrable to germ-free hosts by LDP-selected microbiota, showing that the altered microbiota, not antibiotics per se, play a causal role. These studies characterize important variables in early-life microbe-host metabolic interaction and identify several taxa consistently linked with metabolic alterations. PAPERCLIP:
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“A causal role for the involvement of gut microbes is in part based on the fulfillment of one of Koch’s postulates - namely, the transmission of a disease related phenotype with transplantation of gut microbial organisms to a new host (Cho and Blaser, 2012; Cox et al., 2014; Dumas et al., 2006; Gregory et al., 2015; Koch, 1880; Sandhu and Chase, 1986).”
From Non-lethal Inhibition of Gut Microbial Trimethylamine Production for the Treatment of Atherosclerosis (2015) · cites this paper as Cox et al., 2014
In the citing paper
“Nonetheless, the gut microbiome is known to be remarkably dynamic and adaptive, including changes in response to different dietary inputs, as well as the presence versus absence of distinct diseases (Cox et al., 2014; Koren et al., 2011; Wu et al., 2011).”
From Non-lethal Inhibition of Gut Microbial Trimethylamine Production for the Treatment of Atherosclerosis (2015) · cites this paper as Cox et al., 2014
In the citing paper
“Similarly, recent studies by Blaser and colleagues (34) show that affecting microbiota in early windows of critical development can affect metabolism long term.”
From Transmission of Atherosclerosis Susceptibility with Gut Microbial Transplantation (2015) · cites this paper as [34]
In the citing paper
“Specifically, they have identified several taxa transiently disrupted after low-dose penicillin administration at mouse weaning age to be linked to persistent metabolic alterations such as enhanced dietary-induced fat mass accumulation and decreased intestinal-based immunity (34).”
From Transmission of Atherosclerosis Susceptibility with Gut Microbial Transplantation (2015) · cites this paper as [34]
In the citing paper
“FMT might modulate obesity and metabolism in humans and mice 29,30 , ameliorate metabolic syndrome in patients 31 , and contribute to the treatment of refractory immune checkpoint inhibitor (ICI)-associated colitis 32 and recurrent infections by Clostridium difficile 33 .”
From Healthspan and lifespan extension by fecal microbiota transplantation into progeroid mice (2019) · cites this paper as [30]
In the citing paper
“low dose penicillin (LDP) administration was shown to induce stronger physiological alterations if administered from the beginning of gestation, rather than at weaning”
From Antibiotic-Induced Changes in the Intestinal Microbiota and Disease (2016) · cites this paper as [91]
In the citing paper
“while the expression of intestinal immune genes coding for proteins such asRegIIIγ, β-defensins, and IL-17 was decreased.”
From Antibiotic-Induced Changes in the Intestinal Microbiota and Disease (2016) · cites this paper as [91]
In the citing paper
“following early LDP administration, body mass and fat content were increased in adulthood”
From Antibiotic-Induced Changes in the Intestinal Microbiota and Disease (2016) · cites this paper as [91]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
STAR: ultrafast universal RNA-seq aligner
Dobin, A., Davis, C. A., Schlesinger, F., Drenkow, J., Zaleski, C., Jha, S., Batut, P., Chaisson, M., & Gingeras, T. R. (2013) · Bioinformatics · doi:10.1093/bioinformatics/bts635 · Cited by 51,709
QIIME allows analysis of high-throughput community sequencing data
Caporaso, J. G., Kuczynski, J., Stombaugh, J., Bittinger, K., Bushman, F. D., Costello, E. K., Fierer, N., Peña, A. G., Goodrich, J. K., Gordon, J. I., et al. (2010) · Nature Methods · doi:10.1038/nmeth.f.303 · Cited by 34,887
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
Liao, Y., Smyth, G. K., & Shi, W. (2014) · Bioinformatics · doi:10.1093/bioinformatics/btt656 · Cited by 27,219
vegan: Community Ecology Package
Oksanen, J., Simpson, G. L., Blanchet, F. G., Kindt, R., Legendre, P., Minchin, P. R., O’Hara, R. B., Sólymos, P., Stevens, M. H. H., Szöcs, E., et al. (2001) · doi:10.32614/cran.package.vegan · Cited by 27,099
HTSeq—a Python framework to work with high-throughput sequencing data
Anders, S., Pyl, P. T., & Huber, W. (2015) · Bioinformatics · doi:10.1093/bioinformatics/btu638 · Cited by 21,464
Metagenomic biomarker discovery and explanation
Segata, N., Izard, J., Waldron, L., Gevers, D., Miropolsky, L., Garrett, W. S., & Huttenhower, C. (2011) · Genome Biology · doi:10.1186/gb-2011-12-6-r60 · Cited by 16,192
Differential expression analysis for sequence count data
Anders, S., & Huber, W. (2010) · Genome Biology · doi:10.1186/gb-2010-11-10-r106 · Cited by 15,581
A new method for non-parametric multivariate analysis of variance
Anderson, M. J. (2001) · Austral Ecology · doi:10.1111/j.1442-9993.2001.01070.pp.x · Cited by 13,828
An obesity-associated gut microbiome with increased capacity for energy harvest
Turnbaugh, P. J., Ley, R. E., Mahowald, M. A., Magrini, V., Mardis, E. R., & Gordon, J. I. (2006) · Nature · doi:10.1038/nature05414 · Cited by 12,444
Smyth, G. K. (2004) · Statistical Applications in Genetics and Molecular Biology · doi:10.2202/1544-6115.1027 · Cited by 11,829
Research works printed but not linked: 2
- Beijerinck, 1901, Sur les ferments lactiques de l’industrie, Archives Néerlandaises des Sciences Exactes et Naturelles, 6, 212
- Leidy, 1849, On the existence of entophyta in healthy animals, as a natural condition, Proc. Acad. Nat. Sci. Philadelphia, 4, 225
Cited by
Sorted by citations
Items 401–500 of 1,002
Baseline microbiota composition modulates antibiotic-mediated effects on the gut microbiota and host
Lavelle, A., Hoffmann, T. W., Pham, H., Langella, P., Guédon, É., & Sokol, H. (2019) · Microbiome · doi:10.1186/s40168-019-0725-3 · Cited by 93
Delayed Establishment of Gut Microbiota in Infants Delivered by Cesarean Section
Kim, G., Bae, J., Kim, M. J., Kwon, H., Park, G., Kim, S., Choe, Y. H., Kim, J., Park, S.-H., Choe, B., et al. (2020) · Frontiers in Microbiology · doi:10.3389/fmicb.2020.02099 · Cited by 95
Self-citationLemas, D. J., Yee, S. T., Cacho, N. T., Miller, D. R., Cardel, M. I., Gurka, M. J., Janicke, D. M., & Shenkman, E. A. (2016) · Seminars in Fetal and Neonatal Medicine · doi:10.1016/j.siny.2016.04.013 · Cited by 88
Kobayashi, M., Vekemans, J., Baker, C. J., Ratner, A. J., Doaré, K. L., & Schrag, S. J. (2016) · F1000Research · doi:10.12688/f1000research.9363.1 · Cited by 88
Major shifts in gut microbiota during development and its relationship to growth in ostriches
Videvall, E., Song, S. J., Bensch, H. M., Strandh, M., Engelbrecht, A., Serfontein, N., Hellgren, O., Olivier, A., Cloete, S. W. P., Knight, R. D., et al. (2019) · Molecular Ecology · doi:10.1111/mec.15087 · Cited by 86
The role of the gut microbiome and diet in the pathogenesis of non-alcoholic fatty liver disease
Jennison, E., & Byrne, C. D. (2020) · Clinical and Molecular Hepatology · doi:10.3350/cmh.2020.0129 · Cited by 91
Effects of domestication on the gut microbiota parallel those of human industrialization
Reese, A. T., Chadaideh, K. S., Diggins, C. E., Schell, L. D., Beckel, M., Callahan, P., Ryan, R., Thompson, M. E., & Carmody, R. N. (2021) · eLife · doi:10.7554/elife.60197 · Cited by 91
Immunologic impact of the intestine in metabolic disease
Winer, D. A., Winer, S., Dranse, H. J., & Lam, T. K. T. (2017) · Journal of Clinical Investigation · doi:10.1172/jci88879 · Cited by 95
Mohammadkhah, A. I., Simpson, E. B., Patterson, S. G., & Ferguson, J. F. (2018) · Children · doi:10.3390/children5120160 · Cited by 90
Dai, X., Guo, Z., Chen, D., Li, L., Song, X., Liu, T., Jin, G., Li, Y., Liu, Y., Ajiguli, A., et al. (2020) · Gut Microbes · doi:10.1080/19490976.2020.1738187 · Cited by 89
Keerthisinghe, T. P., Wang, F., Wang, M., Yang, Q. Z., Li, J., Yang, J., Lin, X., Dong, W., & Fang, M. (2020) · Environment International · doi:10.1016/j.envint.2020.105705 · Cited by 86
Ruo, S. W., Alkayyali, T., Win, M. T. T., Tara, A., Joseph, C. G., Kannan, A., Srivastava, K., Ochuba, O., Sandhu, J. K., Went, T. R., et al. (2021) · Cureus · doi:10.7759/cureus.17472 · Cited by 87
Kayani, M. U. R., Kan, Y., Qiu, Y., Shen, Y., Gao, C., Feng, R., Zeng, X., Wang, W., Chen, L., & Su, H. L. (2021) · Environmental Pollution · doi:10.1016/j.envpol.2021.116760 · Cited by 86
Crosstalk between gut microbiota and host immune system and its response to traumatic injury
Ullah, H., Arbab, S., Tian, Y., Chen, Y., Liu, C., Li, Q., & Li, K. (2024) · Frontiers in Immunology · doi:10.3389/fimmu.2024.1413485 · Cited by 99
Mor, A., Antonsen, S., Kahlert, J. A., Holsteen, V., Jørgensen, S. L., Holm‐Pedersen, J., Sørensen, H. T., Pedersen, O. B., & Ehrenstein, V. (2015) · International Journal of Obesity · doi:10.1038/ijo.2015.129 · Cited by 87
Wiles, T. J., Wall, E. S., Schlomann, B. H., Hay, E. A., Parthasarathy, R., & Guillemin, K. J. (2018) · mBio · doi:10.1128/mbio.01877-18 · Cited by 80
Wei, M., Li, C., Dai, Y., Zhou, H., Cui, Y., Zeng, Y., Huang, Q., & Wang, Q. (2021) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2021.630372 · Cited by 92
Goedert, J. J., Hua, X., Yu, G., & Shi, J. (2014) · EBioMedicine · doi:10.1016/j.ebiom.2014.11.004 · Cited by 88
Dodiya, H. B., Frith, M., Sidebottom, A. M., Cao, Y., Koval, J., Chang, E. B., & Sisodia, S. S. (2020) · Scientific Reports · doi:10.1038/s41598-020-64797-5 · Cited by 86
State of the Art in the Culture of the Human Microbiota: New Interests and Strategies
Alou, M. T., Naud, S., Khelaifia, S., Bonnet, M., Lagier, J., & Raoult, D. (2020) · Clinical Microbiology Reviews · doi:10.1128/cmr.00129-19 · Cited by 92
Zhang, G., Wang, Q., Tao, W., Jiang, W., Elinav, E., Wang, Y., & Zhu, S. (2022) · Nature Biomedical Engineering · doi:10.1038/s41551-022-00903-4 · Cited by 84
Enteric nervous system assembly: Functional integration within the developing gut
Hao, M. M., Foong, J. P. P., Bornstein, J. C., Li, Z. L., Berghe, P. V., & Boesmans, W. (2016) · Developmental Biology · doi:10.1016/j.ydbio.2016.05.030 · Cited by 86
Gut Microbiota and Bone Health
Quach, D., & Britton, R. A. (2017) · Advances in experimental medicine and biology · doi:10.1007/978-3-319-66653-2_4 · Cited by 85
McPhee, J. B., & Schertzer, J. D. (2015) · Clinical Science · doi:10.1042/cs20150431 · Cited by 86
Parker, E. P. K., Praharaj, I., John, J. K., Kaliappan, S. P., Kampmann, B., Kang, G., & Grassly, N. C. (2017) · Scientific Reports · doi:10.1038/s41598-017-06862-0 · Cited by 84
Dysbiosis From a Microbial and Host Perspective Relative to Oral Health and Disease
Cugini, C., Ramasubbu, N., Tsiagbe, V. K., & Fine, D. H. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.617485 · Cited by 91
Soderborg, T. K., Borengasser, S. J., Barbour, L. A., & Friedman, J. E. (2016) · Diabetologia · doi:10.1007/s00125-016-3880-0 · Cited by 84
Abouelhassan, Y., Garrison, A. T., Yang, H., Chávez‐Riveros, A., Burch, G. M., & Huigens, R. W. (2019) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.9b00370 · Cited by 83
Kozik, A. J., & Huang, Y. J. (2018) · Annals of Allergy Asthma & Immunology · doi:10.1016/j.anai.2018.12.005 · Cited by 83
Underwood, M. A., Mukhopadhyay, S., Lakshminrusimha, S., & Bevins, C. L. (2020) · Journal of Perinatology · doi:10.1038/s41372-020-00829-2 · Cited by 89
The functional impact of the intestinal microbiome on mucosal immunity and systemic autoimmunity
Longman, R., & Littman, D. R. (2015) · Current Opinion in Rheumatology · doi:10.1097/bor.0000000000000190 · Cited by 82
Helminths and the microbiota: parts of the hygiene hypothesis
Loke, P., & Lim, Y. A. L. (2015) · Parasite Immunology · doi:10.1111/pim.12193 · Cited by 80
Self-citationGut Microbiota Influence in Hematological Malignancies: From Genesis to Cure
Uribe‐Herranz, M., Klein-González, N., Rodríguez‐Lobato, L. G., Juan, M., & de Larrea, C. F. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms22031026 · Cited by 84
Sun, X., Cui, Y., Su, Y., Gao, Z., Diao, X., Li, J., Zhu, X., Li, D., Li, Z., Wang, C., et al. (2021) · mSystems · doi:10.1128/msystems.01374-20 · Cited by 90
Self-citationThe Emerging Role of the Microbiota in Breast Cancer Progression
Bernardo, G., Noci, V. L., Modica, M. D., Montanari, E., Triulzi, T., Pupa, S. M., Tagliabue, E., Sommariva, M., & Sfondrini, L. (2023) · Cells · doi:10.3390/cells12151945 · Cited by 86
Fang, S., Zhuo, Z., Yu, X., Wang, H., & Feng, J. (2018) · Journal of Trace Elements in Medicine and Biology · doi:10.1016/j.jtemb.2018.01.002 · Cited by 83
Barrea, L., Muscogiuri, G., Annunziata, G., Laudisio, D., Pugliese, G., Salzano, C., Colao, A., & Savastano, S. (2019) · Hormones · doi:10.1007/s42000-019-00100-0 · Cited by 81
He, X., Ji, G., Jia, W. P., & Li, H. (2016) · International Journal of Molecular Sciences · doi:10.3390/ijms17030300 · Cited by 82
Self-citationden Hartigh, L. J., Gao, Z., Goodspeed, L., Wang, S., Das, A. K., Burant, C., Chait, A., & Blaser, M. J. (2018) · Journal of Nutrition · doi:10.1093/jn/nxy011 · Cited by 80
Self-citationLi, Y., Cui, Y., Hu, X., Liao, X., & Zhang, Y. (2019) · Molecular Nutrition & Food Research · doi:10.1002/mnfr.201801219 · Cited by 82
The emerging role of microbiota-derived short-chain fatty acids in immunometabolism
Jasim, S. A., Opulencia, M. J. C., Ramírez‐Coronel, A. A., Abdelbasset, W. K., Abed, M. H., Markov, A. A., Al‐Awsi, G. R. L., Shamsiev, J. A., Hammid, A. T., Shalaby, M. N., et al. (2022) · International Immunopharmacology · doi:10.1016/j.intimp.2022.108983 · Cited by 90
Jin, S., Zhao, D., Cai, C., Song, D., Shen, J., Xu, A., Qiao, Y., Ran, Z., & Zheng, Q. (2017) · Scientific Reports · doi:10.1038/srep43662 · Cited by 80
Shen, X. P., Liu, L., Peek, R. M., Acra, S. A., Moore, D. J., Wilson, K. T., He, F., Polk, D. B., & Yan, F. (2018) · Mucosal Immunology · doi:10.1038/s41385-018-0034-3 · Cited by 90
Early Life Antibiotic Exposure and Weight Development in Children
Mbakwa, C. A., Scheres, L. M. J., Penders, J., Mommers, M., Thijs, C. T., & Arts, I. C. W. (2016) · The Journal of Pediatrics · doi:10.1016/j.jpeds.2016.06.015 · Cited by 83
Gut Microbiota and Bone Diseases: A Growing Partnership
Chen, Y., Wang, X., Zhang, C., Liu, Z., Li, C., & Ren, Z. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2022.877776 · Cited by 87
Huang, J., Xing, Z., Kang, W., Hao, H., Mao, Y., Zhang, H., Chen, Y., Tan, Y. Q., He, Y., Zhao, W., et al. (2022) · Frontiers in Immunology · doi:10.3389/fimmu.2022.874922 · Cited by 83
Early Antibiotic Exposure and Weight Outcomes in Young Children
Block, J. P., Bailey, L. C., Gillman, M. W., Lunsford, D., Daley, M. F., Eneli, I., Finkelstein, J. A., Heerman, W. J., Horgan, C. E., Hsia, D. S., et al. (2018) · PEDIATRICS · doi:10.1542/peds.2018-0290 · Cited by 78
Exploring the Science behind Bifidobacterium breve M-16V in Infant Health
Wong, C. B., Iwabuchi, N., & Xiao, J. (2019) · Nutrients · doi:10.3390/nu11081724 · Cited by 78
Denburg, M., Koepsell, K., Lee, J., Gerber, J. S., Bittinger, K. L., & Tasian, G. E. (2020) · Journal of the American Society of Nephrology · doi:10.1681/asn.2019101131 · Cited by 78
Liu, G., Zhu, H., Ma, T., Yan, Z., Zhang, Y., Geng, Y., Zhu, Y. R., & Shi, Y. (2020) · Journal of Thermal Biology · doi:10.1016/j.jtherbio.2020.102619 · Cited by 78
Bai, X., Zhang, B., He, Y., Hong, D., Song, S., Huang, Y., & Zhang, T. (2020) · Environmental Pollution · doi:10.1016/j.envpol.2020.115117 · Cited by 78
Gut microbiome dysbiosis alleviates the progression of osteoarthritis in mice
Guan, Z., Jia, J., Zhang, C., Sun, T., Zhang, W., Yuan, W., Leng, H., & Song, C. (2020) · Clinical Science · doi:10.1042/cs20201224 · Cited by 81
High-resolution characterization of the human microbiome
Noecker, C. A., McNally, C. P., Eng, A., & Borenstein, E. (2016) · Translational research · doi:10.1016/j.trsl.2016.07.012 · Cited by 81
Gao, J., Yan, K.-T., Wang, J.-X., Dou, J., Wang, J., Ren, M., Ma, J., Zhang, X., & Liu, Y. (2020) · Scientific Reports · doi:10.1038/s41598-020-59235-5 · Cited by 76
Advances in the Involvement of Gut Microbiota in Pathophysiology of NAFLD
Jiang, X., Zheng, J., Zhang, S., Wang, B., Wu, C., & Guo, X. (2020) · Frontiers in Medicine · doi:10.3389/fmed.2020.00361 · Cited by 80
Casaburi, G., Duar, R. M., Brown, H. K., Mitchell, R. D., Kazi, S., Chew, S., Cagney, O., Flannery, R. L., Sylvester, K. G., Frese, S. A., et al. (2021) · Scientific Reports · doi:10.1038/s41598-020-80583-9 · Cited by 76
Quereda, J. J., Meza‐Torres, J., Cossart, P., & Pizarro‐Cerdá, J. (2017) · Gut Microbes · doi:10.1080/19490976.2017.1290759 · Cited by 81
The Past and Future Biology of the Human Microbiome in an Age of Extinctions
Blaser, M. J. (2018) · Cell · doi:10.1016/j.cell.2018.02.040 · Cited by 77
Self-citationShi, Y., Kellingray, L., Zhai, Q., Gall, G. L., Narbad, A., Zhao, J., Zhang, H., & Chen, W. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.01948 · Cited by 80
Lee, J., Lee, J., Kim, K., Lee, J., Jung, Y., Hyeon, J. S., Seo, A., Jin, W., Weon, B., Shin, N., et al. (2024) · Kidney International · doi:10.1016/j.kint.2024.01.040 · Cited by 76
Self-citationEcology and Evolution of the Human Microbiota: Fire, Farming and Antibiotics
Gillings, M. R., Paulsen, I. T., & Tetu, S. G. (2015) · Genes · doi:10.3390/genes6030841 · Cited by 78
Koh, H., Blaser, M. J., & Li, H. (2017) · Microbiome · doi:10.1186/s40168-017-0262-x · Cited by 78
Self-citationEarly sexual dimorphism in the developing gut microbiome of northern elephant seals
Stoffel, M. A., Acevedo‐Whitehouse, K. A., Morales‐Durán, N., Grosser, S., Chakarov, N., Krüger, O., Nichols, H. J., Elorriaga-Verplancken, F. R., & Hoffman, J. I. (2020) · Molecular Ecology · doi:10.1111/mec.15385 · Cited by 77
Osteomicrobiology: The influence of gut microbiota on bone in health and disease
Jones, R. M., Mullé, J. G., & Pacifici, R. (2017) · Bone · doi:10.1016/j.bone.2017.04.009 · Cited by 79
Establishment of the early-life microbiome: a DOHaD perspective
Stinson, L. F. (2019) · Journal of Developmental Origins of Health and Disease · doi:10.1017/s2040174419000588 · Cited by 77
Guss, J. D., Taylor, E., Rouse, Z., Roubert, S., Higgins, C. H., Thomas, C. J., Baker, S. P., Vashishth, D., Donnelly, E., Shea, M. K., et al. (2019) · Bone · doi:10.1016/j.bone.2019.06.010 · Cited by 77
Martín, V., Cárdenas, N., Ocaña, S., Marín, M., Arroyo, R., Beltrán, D., Badiola, C., Fernández, L., & Rodríguez, J. M. (2019) · Nutrients · doi:10.3390/nu11040810 · Cited by 75
Antibiotic-perturbed microbiota and the role of probiotics
Szajewska, H., Scott, K. P., de Meij, T. G. J., Forslund, S. K., Knight, R. D., Koren, O., Little, P. S., Johnston, B. C., Łukasik, J., Suez, J., et al. (2024) · Nature Reviews Gastroenterology & Hepatology · doi:10.1038/s41575-024-01023-x · Cited by 80
Effects of oral florfenicol and azithromycin on gut microbiota and adipogenesis in mice
Li, R., Wang, H., Shi, Q., Wang, N., Zhang, Z., Xiong, C., Liu, J., Chen, Y., Jiang, L., & Jiang, Q. (2017) · PLoS ONE · doi:10.1371/journal.pone.0181690 · Cited by 74
Ceylani, T., Jakubowska-Doğru, E., Gurbanov, R., Teker, H. T., & Gozen, A. G. (2018) · Heliyon · doi:10.1016/j.heliyon.2018.e00644 · Cited by 77
Disayathanoowat, T., Li, H.-Y., Supapimon, N., Suwannarach, N., Lumyong, S., Chantawannakul, P., & Guo, J. (2020) · Microorganisms · doi:10.3390/microorganisms8020264 · Cited by 74
Self-citationSeedat, F., Stinton, C., Patterson, J. V., Geppert, J., Tan, B. K., Robinson, E., McCarthy, N. D., Uthman, O. A., Freeman, K., Johnson, S. A., et al. (2017) · BMC Pregnancy and Childbirth · doi:10.1186/s12884-017-1432-3 · Cited by 74
Microbial Diversity and Community Variation in the Intestines of Layer Chickens
Xiao, S., Mi, J., Mei, L., Liang, J. B., Feng, K., Wu, Y., Liao, X., & Wang, Y. (2021) · Animals · doi:10.3390/ani11030840 · Cited by 75
Maternal and early life exposures and their potential to influence development of the microbiome
Bolte, E., Moorshead, D., & Aagaard, K. M. (2022) · Genome Medicine · doi:10.1186/s13073-021-01005-7 · Cited by 78
Zebrafish as a Useful Model System for Human Liver Disease
Shimizu, N., Shiraishi, H., & Hanada, T. (2023) · Cells · doi:10.3390/cells12182246 · Cited by 75
Viennois, É., & Chassaing, B. (2018) · Gut Microbes · doi:10.1080/19490976.2017.1421885 · Cited by 81
Gadde, U. D., Oh, S., Lillehoj, H. S., & Lillehoj, E. P. (2018) · Scientific Reports · doi:10.1038/s41598-018-22004-6 · Cited by 80
RetractedLiu, D., Wen, B., Zhu, K., Luo, Y. L., Li, J., Li, Y., Lin, H., Huang, J., & Liu, Z. (2019) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-019-09764-5 · Cited by 70
Li, Y., Cui, Y., Lu, F. L., Wang, X. Q., Liao, X., Hu, X., & Zhang, Y. (2019) · Journal of Functional Foods · doi:10.1016/j.jff.2019.103436 · Cited by 75
Obesogens: How They Are Identified and Molecular Mechanisms Underlying Their Action
Mohajer, N., Du, C. Y., Checkcinco, C., & Blumberg, B. (2021) · Frontiers in Endocrinology · doi:10.3389/fendo.2021.780888 · Cited by 72
Growth promotion and gut microbiota: insights from antibiotic use
Brüssow, H. (2015) · Environmental Microbiology · doi:10.1111/1462-2920.12786 · Cited by 70
Korpela, K., Salonen, A., Virta, L. J., Kumpu, M., Kekkonen, R. A., & de Vos, W. M. (2016) · PLoS ONE · doi:10.1371/journal.pone.0154012 · Cited by 78
Yu, M., Zhang, C., Yang, Y., Mu, C., Su, Y., Yu, K., & Zhu, W. (2017) · Journal of Animal Science and Biotechnology/Journal of animal science and biotechnology · doi:10.1186/s40104-017-0192-2 · Cited by 72
Murdoch, C. C., Espenschied, S. T., Matty, M. A., Mueller, O., Tobin, D. M., & Rawls, J. F. (2019) · PLoS Pathogens · doi:10.1371/journal.ppat.1007381 · Cited by 76
Slattery, J. M., MacFabe, D. F., & Frye, R. E. (2016) · Clinical Medicine Insights Pediatrics · doi:10.4137/cmped.s38338 · Cited by 72
Associations of prenatal and childhood antibiotic use with child body mass index at age 3 years
Poulsen, M. N., Pollak, J., Bailey-Davis, L. D., Hirsch, A. G., Glass, T. A., & Schwartz, B. S. (2017) · Obesity · doi:10.1002/oby.21719 · Cited by 71
The Microbiome in Celiac Disease
Krishnareddy, S. (2018) · Gastroenterology Clinics of North America · doi:10.1016/j.gtc.2018.09.008 · Cited by 74
Phenolic Compounds Promote Diversity of Gut Microbiota and Maintain Colonic Health
Domínguez-Avila, J. A., Villa-Rodríguez, J. A., Montiel‐Herrera, M., Pacheco‐Ordaz, R., Roopchand, D. E., Venema, K., & González-Aguilar, G. A. (2020) · Digestive Diseases and Sciences · doi:10.1007/s10620-020-06676-7 · Cited by 72
Chemical signaling between gut microbiota and host chromatin: What is your gut really saying?
Krautkramer, K. A., Rey, F. E., & Denu, J. M. (2017) · Journal of Biological Chemistry · doi:10.1074/jbc.r116.761577 · Cited by 70
Li, X., Brejnrod, A., Thorsen, J., Zachariasen, T., Trivedi, U., Russel, J., Vestergaard, G., Stokholm, J., Rasmussen, M. A., & Sørensen, S. J. (2023) · Nature Communications · doi:10.1038/s41467-023-44289-6 · Cited by 73
Antibiotic administration and the development of obesity in children
Principi, N., & Esposito, S. (2016) · International Journal of Antimicrobial Agents · doi:10.1016/j.ijantimicag.2015.12.017 · Cited by 70
Probiotics for Irritable Bowel Syndrome: Clinical Data in Children.
Giannetti, E., & Staiano, A. (2016) · PubMed · doi:10.1097/mpg.0000000000001220 · Cited by 23
The Influence of the Gut Microbiota on Host Physiology: In Pursuit of Mechanisms.
Jones, R. M. (2016) · PubMed · Cited by 71
Ganci, M., Suleyman, E., Butt, H., & Ball, M. (2019) · Brain and Behavior · doi:10.1002/brb3.1408 · Cited by 75
Long-Term Effects of Early-Life Antibiotic Exposure on Resistance to Subsequent Bacterial Infection
Baudron, C. R., Ruiz, V. E., Swan, A. M., Vallance, B. A., Özkul, C., Pei, Z., Li, J., Battaglia, T., Perez-Perez, G. I., & Blaser, M. J. (2019) · mBio · doi:10.1128/mbio.02820-19 · Cited by 74
Self-citationLogan, A. C., Katzman, M. A., & Balanzá‐Martínez, V. (2015) · Journal of PHYSIOLOGICAL ANTHROPOLOGY · doi:10.1186/s40101-015-0041-y · Cited by 73
Diet and Gut Microbiota in Health and Disease
Shen, T. D. (2017) · Nestlé Nutrition Institute Workshop series · doi:10.1159/000455220 · Cited by 74
Paun, A., & Danska, J. S. (2016) · Pediatric Diabetes · doi:10.1111/pedi.12424 · Cited by 67
Fecal Viral Community Responses to High-Fat Diet in Mice
Schulfer, A. F., Santiago-Rodríguez, T. M., Ly, M., Borin, J. M., Chopyk, J., Blaser, M. J., & Pride, D. T. (2020) · mSphere · doi:10.1128/msphere.00833-19 · Cited by 69
Self-citationBile acids at the cross-roads of gut microbiome–host cardiometabolic interactions
Ryan, P. M., Stanton, C., & Caplice, N. M. (2017) · Diabetology & Metabolic Syndrome · doi:10.1186/s13098-017-0299-9 · Cited by 70
Metadata
- Authors
- Cox, L. M., Yamanishi, S., Sohn, J., Alekseyenko, A. V., Leung, J. M., Cho, I., Kim, S. G., Li, H., Gao, Z., Mahana, D., Zárate Rodriguez, J. G., Rogers, A. B., Robine, N., Loke, P., & Blaser, M. J.
- Affiliations
- NYU Langone Health (US)
- Tufts University (US)
- New York Genome Center (US)
- VA NY Harbor Healthcare System (US)
- Corresponding author
- Blaser, Martin J.
- ORCID
- Venue
- Cell
- Publisher
- Elsevier BV
- Published
- 2014-08
- Volume
- 158
- Issue
- 4
- Pages
- 705-721
- ISSN
- 0092-8674 (ISSN-L)
- PMC
- PMC4134513
- OpenAlex
- W2053039168
- Cited by
- 1,859
- References
- 81
- Citations by year
- 2026: 74 · 2025: 119 · 2024: 137 · 2023: 145 · 2022: 177 · 2021: 194 · 2020: 182 · 2019: 163 · 2018: 182 · 2017: 177 · 2016: 161 · 2015: 124 · 2014: 20
- FWCI
- 65.83
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Cell (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- Rutgers University Community Repository (Rutgers University) (submittedVersion)
- Funders
- NYU Langone Medical Center
- New York Genome Center
- National Institutes of Health
- National Cancer Institute (P30CA016087)
- National Institute of Allergy and Infectious Diseases (R01AI093811)
- National Institute of Diabetes and Digestive and Kidney Diseases (R01DK090989)
- National Center for Research Resources (UL1RR029893)
- Argonne National Laboratory
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Health Sciences › Medicine › Endocrinology, Diabetes and Metabolism › Adipokines, Inflammation, and Metabolic Diseases
- Life Sciences › Agricultural and Biological Sciences › Animal Science and Zoology › Animal Nutrition and Physiology
- Keywords
- gut microbiota, early-life antibiotic exposure, microbiota disruption, body composition, obesity, high-fat diet, ileal gene expression, immunity, germ-free mice, host-microbe metabolic interactions, developmental programming
- MeSH terms
- Animals, Anti-Bacterial Agents, Bacteria, Disease Models, Animal, Female, Intestinal Mucosa, Intestines, Male, Mice, Inbred C57BL, Obesity, Penicillins, Mice, Microbiota
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review