Motif affinity and mass spectrometry proteomic approach for the discovery of cellular AMPK targets: Identification of mitochondrial fission factor as a new AMPK substrate
Open accessAbstract
AMP-activated protein kinase (AMPK) is a key cellular energy sensor and regulator of metabolic homeostasis. Although it is best known for its effects on carbohydrate and lipid metabolism, AMPK is implicated in diverse cellular processes, including mitochondrial biogenesis, autophagy, and cell growth and proliferation. To further our understanding of energy homeostasis through AMPK-dependent processes, the design and application of approaches to identify and characterise novel AMPK substrates are invaluable. Here, we report an affinity proteomicstrategy for the discovery and validation of AMPK targets using an antibody to isolate proteins containing the phospho-AMPK substrate recognition motif from hepatocytes that had been treated with pharmacological AMPK activators. We identified 57 proteins that were uniquely enriched in the activator-treated hepatocytes, but were absent in hepatocytes lacking AMPK. We focused on two candidates, cingulin and mitochondrial fission factor (MFF), and further characterised/validated them as AMPK-dependent targets by immunoblotting with phosphorylation site-specific antibodies. A small-molecule AMPK activator caused transient phosphorylation of endogenous cingulin at S137 in intestinal Caco2 cells. Multiple splice-variants of MFF appear to express in hepatocytes and we identified a common AMPK-dependent phospho-site (S129) in all the 3 predominant variants spanning the mass range and a short variant-specific site (S146). Collectively, our proteomic-based approach using a phospho-AMPK substrate antibody in combination with genetic models and selective AMPK activators will provide a powerful and reliable platform for identifying novel AMPK-dependent cellular targets.
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Compound 991 robustly activates AMPK by increasing phosphorylation of downstream targets including ACC and Raptor.
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From Exercise activates AMPK in mouse and human pancreatic islets to decrease senescence (2024) · cites this paper as [32]
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- Authors
- Ducommun, S., Deak, M., Sumpton, D., Ford, R. J., Núñez Galindo, A., Kussmann, M., Viollet, B., Steinberg, G. R., Foretz, M., Dayon, L., Morrice, N. A., & Sakamoto, K.
- Affiliations
- École Polytechnique Fédérale de Lausanne (CH)
- Cancer Research UK Scotland Institute (GB)
- McMaster University (CA)
- Centre National de la Recherche Scientifique (FR)
- Corresponding author
- Sakamoto, Kei
- ORCID
- Venue
- Cellular Signalling
- Publisher
- Elsevier BV
- Published
- 2015-05
- Volume
- 27
- Issue
- 5
- Pages
- 978-988
- ISSN
- 0898-6568 (ISSN-L)
- OpenAlex
- W1982521131
- Cited by
- 167
- References
- 37
- Citations by year
- 2026: 7 · 2025: 7 · 2024: 15 · 2023: 12 · 2022: 14 · 2021: 20 · 2020: 22 · 2019: 16 · 2018: 15 · 2017: 17 · 2016: 15 · 2015: 7
- FWCI
- 7.95
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- Cellular Signalling (publishedVersion, cc-by-nc-nd)
- PubMed (publishedVersion)
- ENLIGHTEN (Jurnal Bimbingan dan Konseling Islam) (acceptedVersion)
- Funders
- Région Ile-de-France (CORDDIM)
- Société Francophone du Diabète (SFD)
- Canadian Institutes of Health Research (811812)
- Canadian Diabetes Association (846130)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Metabolism, Diabetes, and Cancer
- Physical Sciences › Chemistry › Spectroscopy › Advanced Proteomics Techniques and Applications
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Kinase Regulation and GTPase Signaling
- Keywords
- AMPK, mitochondrial fission factor, cingulin, affinity proteomics, hepatocytes, AMPK activators, protein phosphorylation, splice variants, energy homeostasis, mitochondrial fission
- MeSH terms
- Amino Acid Sequence, Animals, Cells, Cultured, Humans, Male, Membrane Proteins, Mice, Inbred C57BL, Molecular Sequence Data, Phosphorylation, Mass Spectrometry, Caco-2 Cells, Hepatocytes, Mitochondrial Proteins, Proteomics, Mice, AMP-Activated Protein Kinases
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