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Non-catalytic Roles of Tet2 Are Essential to Regulate Hematopoietic Stem and Progenitor Cell Homeostasis

Ito, Kyoko, Lee, Joun, Chrysanthou, Stephanie, Zhao, Yilin, Josephs, Katherine, Sato, Hiroyo, Teruya-Feldstein, Julie, Zheng, Deyou, Dawlaty, Meelad M., Ito, Keisuke·2019·Cell Reports

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Figure 1. Generation of Tet2 Catalytic Mutant (Mut) Mouse and Characterization of Its Hematological Phenotypes (A) Tet2 wild-type (WT) and catalytic Mut proteins (top) and alleles (bottom). (B and C) Analysis of the genotypes of Tet2 catalytic Mut mice by RFLP (restriction fragment length polymorphism) (B) and Sanger sequencing (C). (D) Tet2 mRNA levels in Lin−Sca-1+c-Kit+ (LSK) cells of Indicated genotypes quantified by qRT-PCR. Data are normalized to Gapdh. Note the absence of Tet2 mRNA in knockout (KO) but its normal expression in Mut samples. (E) Tet2 protein levels in total bone marrow isolated from 4-month-old mice assessed by western blot. Quantified Tet2 signal intensity normalized to actin signal intensity is shown. Note the absence of Tet2 protein in KO but its normal and comparable expression in Mut and WT samples. (F) Levels of 5hmC in the bone marrow of the indicated genotypes, assessed by dot blot and quantified as average of three separated experiments (relative to WT control samples) (n = 3). (G) Overview of experimental platform using Tet2 WT, Mut, and KO mice. (H) Blood counts of Tet2 Mut and KO mice (4 months old, n = 8). (I) Representative smears of peripheral blood (PB) of 10-month-old Tet2 Mut (ii), Tet2 KO with MDS-like myeloid (iii), and lymphoid (iv) phenotypes and WT control mice (i). Images of representative dysplastic hematopoietic cells found in Tet2 Mut and KO mice are also shown (right; b–j, higher magnification images). Tet2 Mut and KO mice show dysplastic erythroid cells (polychromatophilic, blue arrowhead; Howell-Jolly bodies, black arrowhead; other poikilocytes [e.g., echinocytes], outlined arrowhead; immature erythroid cells, blue-outlined arrowhead). Dysplastic myeloid cells (d and f) and dysplastic platelets (giant platelet, g), as well as immature B cells (black arrows [h and i]) are shown. All images are taken at ×100 magnification. Scale bars, 10 μm. (J) Representative flow data for myeloid and lymphoid lineages in PB from Tet2 Mut mice (middle) and Tet2 KO mice with myeloid and B cell phenotypes (right) (10 months old). Flow data for WT control are also shown (left). (K) Percentages ± SEM of CD11b+ (left), c-Kit+ (middle), and B220lowCD19+CD43+ (in Gr-1−CD4/8− cells, right) cells in the PB in Tet2 Mut (n = 6) and KO (n = 8) mice (10 months old). Error bars indicate SD unless otherwise specified. n.c. stands for no significant change. See also Figure S1.
Figure 1. Generation of Tet2 Catalytic Mutant (Mut) Mouse and Characterization of Its Hematological Phenotypes (A) Tet2 wild-type (WT) and catalytic Mut proteins (top) and alleles (bottom). (B and C) Analysis of the genotypes of Tet2 catalytic Mut mice by RFLP (restriction fragment length polymorphism) (B) and Sanger sequencing (C). (D) Tet2 mRNA levels in Lin−Sca-1+c-Kit+ (LSK) cells of Indicated genotypes quantified by qRT-PCR. Data are normalized to Gapdh. Note the absence of Tet2 mRNA in knockout (KO) but its normal expression in Mut samples. (E) Tet2 protein levels in total bone marrow isolated from 4-month-old mice assessed by western blot. Quantified Tet2 signal intensity normalized to actin signal intensity is shown. Note the absence of Tet2 protein in KO but its normal and comparable expression in Mut and WT samples. (F) Levels of 5hmC in the bone marrow of the indicated genotypes, assessed by dot blot and quantified as average of three separated experiments (relative to WT control samples) (n = 3). (G) Overview of experimental platform using Tet2 WT, Mut, and KO mice. (H) Blood counts of Tet2 Mut and KO mice (4 months old, n = 8). (I) Representative smears of peripheral blood (PB) of 10-month-old Tet2 Mut (ii), Tet2 KO with MDS-like myeloid (iii), and lymphoid (iv) phenotypes and WT control mice (i). Images of representative dysplastic hematopoietic cells found in Tet2 Mut and KO mice are also shown (right; b–j, higher magnification images). Tet2 Mut and KO mice show dysplastic erythroid cells (polychromatophilic, blue arrowhead; Howell-Jolly bodies, black arrowhead; other poikilocytes [e.g., echinocytes], outlined arrowhead; immature erythroid cells, blue-outlined arrowhead). Dysplastic myeloid cells (d and f) and dysplastic platelets (giant platelet, g), as well as immature B cells (black arrows [h and i]) are shown. All images are taken at ×100 magnification. Scale bars, 10 μm. (J) Representative flow data for myeloid and lymphoid lineages in PB from Tet2 Mut mice (middle) and Tet2 KO mice with myeloid and B cell phenotypes (right) (10 months old). Flow data for WT control are also shown (left). (K) Percentages ± SEM of CD11b+ (left), c-Kit+ (middle), and B220lowCD19+CD43+ (in Gr-1−CD4/8− cells, right) cells in the PB in Tet2 Mut (n = 6) and KO (n = 8) mice (10 months old). Error bars indicate SD unless otherwise specified. n.c. stands for no significant change. See also Figure S1.CC BY-NC-ND · PubMed Central
Figure 2. Analysis of Tet2 Mut and KO Mouse Bone Marrow (A) Percentages of the indicated fractions in the bone marrow of Tet2 Mut and KO mice (4 months old) (n = 6). (B) Bone marrow flow analysis for myeloid and lymphoid cells from Tet2 Mut and KO mice (10 months old). (C and D) Representative flow data for myeloid progenitors and HSPCs in the bone marrow from Tet2 Mut and KO mice (10 months old). Percentages of the indicated fractions (percentage in Lin−Sca1−c-Kit+ cells for CMPs, GMPs, and MEPs; percentage in Lin−CD127+ cells for CLPs; percentage in Lin− cells for LSK; and percentage in CD135−LSK cells for CD150+ HSCs) (n = 6). (E) Tet2-KO HSPCs have increased replating capacity compared to Tet2-Mut HSPCs (10 months old, up to fourth -round replating data) (n = 3). (F) Representative images of May-Grünwald-Giemsa-stained cytospin preparations of the colonies formed by HSPCs from Tet2 WT, Mut, and KO mice (at second replating). Metamyelocytes, myelocytes, and matured granulocytes consist of WT colonies, and immature and dysplastic myeloid cells are increased in Tet2 Mut and KO colonies (also see Figure S2H). Scale bars, 10 μm. HSPCs, hematopoietic stem and progenitor cells; LSK, Lin−c-Kit+Sca-1+; MEP, megakaryocyte-erythrocyte progenitor, Lin−Sca-1−c-Kit+CD16/32low/negCD34low/neg; GMP, granulocyte-monocyte progenitor, Lin−Sca-1−c-Kit+CD16/32highCD34+; CMP, common myeloid progenitor, Lin−Sca-1−c-Kit+CD16/32lowCD34+; CLP, common lymphoid progenitor, Lin−IL7Rα+c-KitmidSca-1+. Error bars indicate SD. n.c. stands for no significant change. See also Figure S2.
Figure 2. Analysis of Tet2 Mut and KO Mouse Bone Marrow (A) Percentages of the indicated fractions in the bone marrow of Tet2 Mut and KO mice (4 months old) (n = 6). (B) Bone marrow flow analysis for myeloid and lymphoid cells from Tet2 Mut and KO mice (10 months old). (C and D) Representative flow data for myeloid progenitors and HSPCs in the bone marrow from Tet2 Mut and KO mice (10 months old). Percentages of the indicated fractions (percentage in Lin−Sca1−c-Kit+ cells for CMPs, GMPs, and MEPs; percentage in Lin−CD127+ cells for CLPs; percentage in Lin− cells for LSK; and percentage in CD135−LSK cells for CD150+ HSCs) (n = 6). (E) Tet2-KO HSPCs have increased replating capacity compared to Tet2-Mut HSPCs (10 months old, up to fourth -round replating data) (n = 3). (F) Representative images of May-Grünwald-Giemsa-stained cytospin preparations of the colonies formed by HSPCs from Tet2 WT, Mut, and KO mice (at second replating). Metamyelocytes, myelocytes, and matured granulocytes consist of WT colonies, and immature and dysplastic myeloid cells are increased in Tet2 Mut and KO colonies (also see Figure S2H). Scale bars, 10 μm. HSPCs, hematopoietic stem and progenitor cells; LSK, Lin−c-Kit+Sca-1+; MEP, megakaryocyte-erythrocyte progenitor, Lin−Sca-1−c-Kit+CD16/32low/negCD34low/neg; GMP, granulocyte-monocyte progenitor, Lin−Sca-1−c-Kit+CD16/32highCD34+; CMP, common myeloid progenitor, Lin−Sca-1−c-Kit+CD16/32lowCD34+; CLP, common lymphoid progenitor, Lin−IL7Rα+c-KitmidSca-1+. Error bars indicate SD. n.c. stands for no significant change. See also Figure S2.CC BY-NC-ND · PubMed Central
Figure 3. Characterization of Hematological Malignancies in Tet2 Catalytic Mut Mice (A and B) Spleen weight (n = 3–6; A, left). Representative images of spleens from Tet2 Mut mice with myeloid phenotypes and Tet2 KO mice with lymphoid phenotypes (A, right) (10 months old). Representative images of lymph nodes from Tet2 Mut mice with myeloid phenotypes (B). (C and D) Representative flow data for myeloid and lymphoid lineages in spleens from Tet2 Mut mice with myeloid phenotypes (C, middle) and Tet2 KO mice with lymphoid phenotypes (C, bottom) (10 months old). The percentages of indicated fractions in spleens from Tet2 Mut and Tet2 KO mice are shown (D, n = 6). (E and F) Kaplan-Meier survival curves of overall survival (E) and splenomegaly-free survival (F) of Tet2 Mut and KO mice. The number of mice in each group are shown in parenthesis. Log-rank test was used to generate p values. (G) Disease spectrum in Tet2 Mut and KO mice (n = 16, 18, respectively). (H and I) Schematic of transplantation of diseased bone marrow (H, top). Survival curve of transplanted mice (H, bottom, n = 10 for Mut, 9 for WT and KO). All recipient mice transplanted with Tet2 Mut bone marrow developed lethal myeloid malignancies within 6 weeks after bone marrow transplantation (BMT) (H, bottom). Representative flow cytometric analysis for myeloid and lymphoid lineages in PB of recipient mice transplanted with Tet2 Mut (I. top) or KO (I. bottom) bone marrow, 3 weeks after BMT are shown. Error bars indicate SD. n.c. stands for no significant change. See also Figure S3.
Figure 3. Characterization of Hematological Malignancies in Tet2 Catalytic Mut Mice (A and B) Spleen weight (n = 3–6; A, left). Representative images of spleens from Tet2 Mut mice with myeloid phenotypes and Tet2 KO mice with lymphoid phenotypes (A, right) (10 months old). Representative images of lymph nodes from Tet2 Mut mice with myeloid phenotypes (B). (C and D) Representative flow data for myeloid and lymphoid lineages in spleens from Tet2 Mut mice with myeloid phenotypes (C, middle) and Tet2 KO mice with lymphoid phenotypes (C, bottom) (10 months old). The percentages of indicated fractions in spleens from Tet2 Mut and Tet2 KO mice are shown (D, n = 6). (E and F) Kaplan-Meier survival curves of overall survival (E) and splenomegaly-free survival (F) of Tet2 Mut and KO mice. The number of mice in each group are shown in parenthesis. Log-rank test was used to generate p values. (G) Disease spectrum in Tet2 Mut and KO mice (n = 16, 18, respectively). (H and I) Schematic of transplantation of diseased bone marrow (H, top). Survival curve of transplanted mice (H, bottom, n = 10 for Mut, 9 for WT and KO). All recipient mice transplanted with Tet2 Mut bone marrow developed lethal myeloid malignancies within 6 weeks after bone marrow transplantation (BMT) (H, bottom). Representative flow cytometric analysis for myeloid and lymphoid lineages in PB of recipient mice transplanted with Tet2 Mut (I. top) or KO (I. bottom) bone marrow, 3 weeks after BMT are shown. Error bars indicate SD. n.c. stands for no significant change. See also Figure S3.CC BY-NC-ND · PubMed Central
Figure 4. Gene Expression Profiling of Tet2 Mut and KO HSPCs (A) MA plot of RNA-seq analysis of 2-month-old LSK cells as log2 fold change versus mean gene expression levels. Differentially expressed genes (DEGs) are depicted in red. Mut or KO groups are compared to WT. (B) Heatmap of differentially expressed genes identified by RNA-seq across LSK cells of indicated genotypes. Genes differentially expressed in at least one of the comparisons are displayed. Intensity values are log2 transformed (left) and colors represent relative expression across samples. Venn diagram illustrating the overlap between all DEGs in Tet2-Mut and Tet2-KO LSK cells (right). (C) Selected terms from GO and KEGG analysis of DEGs in LSK cells. Data are plotted with colors for −log10 of p value and bubble sizes for numbers of genes. (D) MA plot of RNA-seq analysis of 2-month-old Lin− cells as log2 fold change versus mean gene expression levels. DEGs are depicted in red (compared to WT). (E) Heatmap (left) of DEGs identified by RNA-seq across Lin− cells of indicated genotypes. Genes differentially expressed in at least one of the comparisons are displayed. Venn diagram illustrating the overlap between all DEGs in Tet2-Mut and Tet2-KO Lin− cells (right). (F) Selected terms from GO and KEGG analysis of DEGs in Lin− cells. Data are plotted with colors for −log10 of p value and bubble sizes for numbers of genes. (G) Comparison of DEGs with Tet2 ChIP-seq peaks in bone marrow, revealing that nearly half of DEGs in LSK cells and approximately one-third of DEGs in Lin− cells are bound by Tet2 (i.e., direct targets of Tet2). Tet2 ChIP-seq data were from a previous study (see STAR Methods) (H) Classification of Tet2 peaks at DEGs revealing that Tet2 binding is enriched at the promoters of Tet2-bound DEGs. (I) Relative expression levels of Hoxa9 and Gata2 mRNA in LSK or Lin− cells from mice of indicated genotypes (compared to WT control samples), quantified by qRT-PCR (n = 3). Data normalized to Gapdh. (J and K) Overexpression of Gata2 in the bone marrow of Tet2 Mut or KO mice with MDS- or CLL-like hematopoietic disorder, respectively, followed by competitive BMT (mixture of test cells [Ly45.2] with competitor [Ly45.1/45.2] in a 1:3 ratio). Percentage of donor-derived cells in PB of recipient mice transplanted 3 weeks after BMT is shown in (J) (n = 4), and the survival curve of transplanted mice is shown in (K) (n = 8, 12, and 10 for WT, Mu, and KO, respectively). (L) Model summarizing the effects of loss of Tet2 versus loss of its catalytic activity alone on myeloid and lymphoid lineage homeostasis and development of malignancies. Error bars indicate SD. n.c. stands for no significant change. See also Figure S4.
Figure 4. Gene Expression Profiling of Tet2 Mut and KO HSPCs (A) MA plot of RNA-seq analysis of 2-month-old LSK cells as log2 fold change versus mean gene expression levels. Differentially expressed genes (DEGs) are depicted in red. Mut or KO groups are compared to WT. (B) Heatmap of differentially expressed genes identified by RNA-seq across LSK cells of indicated genotypes. Genes differentially expressed in at least one of the comparisons are displayed. Intensity values are log2 transformed (left) and colors represent relative expression across samples. Venn diagram illustrating the overlap between all DEGs in Tet2-Mut and Tet2-KO LSK cells (right). (C) Selected terms from GO and KEGG analysis of DEGs in LSK cells. Data are plotted with colors for −log10 of p value and bubble sizes for numbers of genes. (D) MA plot of RNA-seq analysis of 2-month-old Lin− cells as log2 fold change versus mean gene expression levels. DEGs are depicted in red (compared to WT). (E) Heatmap (left) of DEGs identified by RNA-seq across Lin− cells of indicated genotypes. Genes differentially expressed in at least one of the comparisons are displayed. Venn diagram illustrating the overlap between all DEGs in Tet2-Mut and Tet2-KO Lin− cells (right). (F) Selected terms from GO and KEGG analysis of DEGs in Lin− cells. Data are plotted with colors for −log10 of p value and bubble sizes for numbers of genes. (G) Comparison of DEGs with Tet2 ChIP-seq peaks in bone marrow, revealing that nearly half of DEGs in LSK cells and approximately one-third of DEGs in Lin− cells are bound by Tet2 (i.e., direct targets of Tet2). Tet2 ChIP-seq data were from a previous study (see STAR Methods) (H) Classification of Tet2 peaks at DEGs revealing that Tet2 binding is enriched at the promoters of Tet2-bound DEGs. (I) Relative expression levels of Hoxa9 and Gata2 mRNA in LSK or Lin− cells from mice of indicated genotypes (compared to WT control samples), quantified by qRT-PCR (n = 3). Data normalized to Gapdh. (J and K) Overexpression of Gata2 in the bone marrow of Tet2 Mut or KO mice with MDS- or CLL-like hematopoietic disorder, respectively, followed by competitive BMT (mixture of test cells [Ly45.2] with competitor [Ly45.1/45.2] in a 1:3 ratio). Percentage of donor-derived cells in PB of recipient mice transplanted 3 weeks after BMT is shown in (J) (n = 4), and the survival curve of transplanted mice is shown in (K) (n = 8, 12, and 10 for WT, Mu, and KO, respectively). (L) Model summarizing the effects of loss of Tet2 versus loss of its catalytic activity alone on myeloid and lymphoid lineage homeostasis and development of malignancies. Error bars indicate SD. n.c. stands for no significant change. See also Figure S4.CC BY-NC-ND · PubMed Central

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Metadata

Authors
Ito, K., Lee, J., Chrysanthou, S., Zhao, Y., Josephs, K., Sato, H., Teruya-Feldstein, J., Zheng, D., Dawlaty, M. M., & Ito, K.
Venue
Cell Reports
Publisher
Elsevier BV
Published
2019-09
Volume
28
Issue
10
Pages
2480-2490.e4
ISSN
2211-1247
Cited by
114
References
9
Language
en
Funders
National Institutes of Health

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CoChat. (2026). Citation check: Non-catalytic Roles of Tet2 Are Essential to Regulate Hematopoietic Stem and Progenitor Cell Homeostasis. https://app.cochat.ai/papers/10.1016/j.celrep.2019.07.094
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Ito, K., Lee, J., Chrysanthou, S., Zhao, Y., Josephs, K., Sato, H., Teruya-Feldstein, J., Zheng, D., Dawlaty, M. M., & Ito, K. (2019). Non-catalytic Roles of Tet2 Are Essential to Regulate Hematopoietic Stem and Progenitor Cell Homeostasis. Cell Reports. https://doi.org/10.1016/j.celrep.2019.07.094