Python Materials Genomics (pymatgen): A robust, open-source python library for materials analysis
Open accessThe claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Combining ab initio calculations with simple substitutions has allowed researchers to improve to 48,000 computationally stable materials according to the paper's own recalculations.
“Combining ab initio calculations with simple substitutions has allowed researchers to improve to 48,000 computationally stable materials according to our own recalculations22–24 (see Methods).”
From Scaling deep learning for materials discovery (2023) · cites this paper as [23]
Section 6 (page unavailable) describes a Sn-for-Ge substitution followed by a first-principles calculation that predicted one material to be stable. Section 3 also describes substitution as a way to generate candidate materials. The paper does not report 48,000 computationally stable materials or its own recalculation of that figure; the citing sentence calls the recalculations “our own.” (LLM, conf=0.88)
Experimental — accuracy not yet measured
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Kresse, G., & Furthmüller, J. (1996) · Physical Review B · doi:10.1103/physrevb.54.11169 · Cited by 123,652 · see citing works
Python for scientific computing
Oliphant, T. E. (2007) · Computing in Science & Engineering · doi:10.1109/mcse.2007.58 · Cited by 3,303 · see citing works
Flagged first, then by citations
Research works printed but not linked: 31
- Gonze, 2009, Computer Physics Communications, 180, 2582, 10.1016/j.cpc.2009.07.007 · DOI
- Gonze, 2005, Zeitschrift für Kristallographie, 220, 558, 10.1524/zkri.220.5.558.65066 · DOI
- Jain, 2011, Computational Materials Science, 50, 2295, 10.1016/j.commatsci.2011.02.023 · DOI
- Hautier, 2011, Chemistry of Materials, 23, 3495, 10.1021/cm200949v · DOI
- Hautier, 2011, Journal of Materials Chemistry, 21, 17147, 10.1039/c1jm12216a · DOI
- Ceder, 2011, MRS Bulletin, 36, 185, 10.1557/mrs.2011.31 · DOI
- Ong, 2011, Energy & Environmental Science, 4, 3680, 10.1039/c1ee01782a · DOI
- Mo, 2012, Chemistry of Materials, 24, 15, 10.1021/cm203303y · DOI
- Curtarolo, 2012, Computational Materials Science, 58, 218, 10.1016/j.commatsci.2012.02.005 · DOI
- Curtarolo, 2005, Computer Coupling of Phase Diagrams and Thermochemistry, 29, 163, 10.1016/j.calphad.2005.01.002 · DOI
- Kolmogorov, 2008, Physical Review B, 78, 1, 10.1103/PhysRevB.78.094520 · DOI
- Yang, 2012, Nature Materials, 11, 614, 10.1038/nmat3332 · DOI
- Hummelshøj, 2012, Angewandte Chemie (International Ed. in English), 51, 272, 10.1002/anie.201107947 · DOI
- Hachmann, 2011, The Journal of Physical Chemistry Letters, 2, 2241, 10.1021/jz200866s · DOI
- Sokolov, 2011, Nature communications, 2, 437, 10.1038/ncomms1451 · DOI
- Hester, 2006, Journal of Applied Crystallography, 39, 621, 10.1107/S0021889806015627 · DOI
- O’Boyle, 2011, Journal of Cheminformatics, 3, 33, 10.1186/1758-2946-3-33 · DOI
- Bahn, 2002, Computer Science Engineering, 4, 56, 10.1109/5992.998641 · DOI
- Hautier, 2010, Inorganic Chemistry, 656
- Anisimov, 1991, Physical Review B, 44, 943, 10.1103/PhysRevB.44.943 · DOI
- Anisimov, 1997, Journal of Physics: Condensation Matter, 9, 767, 10.1088/0953-8984/9/4/002 · DOI
- Liechtenstein, 1995, Physical Review B, 52, R5467, 10.1103/PhysRevB.52.R5467 · DOI
- Jain, 2011, Physical Review B, 84, 045115, 10.1103/PhysRevB.84.045115 · DOI
- Zhou, 2004, Physical Review B, 70, 235121, 10.1103/PhysRevB.70.235121 · DOI
- Wang, 2006, Physical Review B, 73, 195107, 10.1103/PhysRevB.73.195107 · DOI · Paper page
- Ong, 2008, Chemistry of Materials, 20, 1798, 10.1021/cm702327g · DOI
- Ong, 2010, Electrochemistry Communications, 12, 427, 10.1016/j.elecom.2010.01.010 · DOI
- Fielding, 2002, ACM Transactions on Internet Technology, 2, 115, 10.1145/514183.514185 · DOI
- Kaib, 2012, Chemistry of Materials, 8, 2
- Bergerhoff, 1983, Journal of Chemical Information and Computer Sciences, 23, 66, 10.1021/ci00038a003 · DOI
- S.P. Ong, Y. Mo, W.D. Richards, L. Miara, H.S. Lee, G. Ceder. Energy & Environmental Science (2012), http://dx.doi.org/10.1039/c2ee23355j. · DOI
Cited by
Sorted by citations
Commentary: The Materials Project: A materials genome approach to accelerating materials innovation
Jain, A., Ong, S. P., Hautier, G., Chen, W., Richards, W. D., Dacek, S., Cholia, S., Gunter, D., Skinner, D., Ceder, G., et al. (2013) · APL Materials · doi:10.1063/1.4812323 · Cited by 13,094 · see citing works
Self-citationSchNet – A deep learning architecture for molecules and materials
Schütt, K. T., Sauceda, H. E., Kindermans, P.-J., Tkatchenko, A., & Müller, K.-R. (2018) · The Journal of Chemical Physics · doi:10.1063/1.5019779 · Cited by 2,217 · see citing works
Mounet, N., Gibertini, M., Schwaller, P., Campi, D., Merkys, A., Marrazzo, A., Sohier, T., Castelli, I. E., Cepellotti, A., Pizzi, G., et al. (2018) · Nature Nanotechnology · doi:10.1038/s41565-017-0035-5 · Cited by 1,863 · see citing works
Interface Stability in Solid-State Batteries
Richards, W. D., Miara, L. J., Wang, Y., Kim, J. C., & Ceder, G. (2016) · Chemistry of Materials · doi:10.1021/acs.chemmater.5b04082 · Cited by 1,652 · see citing works
Self-citationGraph Networks as a Universal Machine Learning Framework for Molecules and Crystals
Chen, C., Ye, W., Zuo, Y., Zheng, C., & Ong, S. P. (2019) · Chemistry of Materials · doi:10.1021/acs.chemmater.9b01294 · Cited by 1,552 · see citing works
Self-citationScaling deep learning for materials discovery
Merchant, A., Batzner, S., Schoenholz, S. S., Aykol, M., Cheon, G., & Cubuk, E. D. (2023) · Nature · doi:10.1038/s41586-023-06735-9 · Cited by 1,527 · see citing works
Unsupervised word embeddings capture latent knowledge from materials science literature
Tshitoyan, V., Dagdelen, J., Weston, L., Dunn, A., Rong, Z., Kononova, O., Persson, K. A., Ceder, G., & Jain, A. (2019) · Nature · doi:10.1038/s41586-019-1335-8 · Cited by 1,123 · see citing works
Self-citationAn autonomous laboratory for the accelerated synthesis of inorganic materials
Szymanski, N. J., Rendy, B., Fei, Y., Kumar, R. E., He, T., Milsted, D., McDermott, M. J., Gallant, M., Cubuk, E. D., Merchant, A., et al. (2023) · Nature · doi:10.1038/s41586-023-06734-w · Cited by 1,041 · see citing works
“Finally, we removed all compounds predicted to have uncommon and potentially challenging oxidation states (for example, Co 4+ ), as determined by pymatgen 38 .”
Self-citationTran, K., & Ulissi, Z. W. (2018) · Nature Catalysis · doi:10.1038/s41929-018-0142-1 · Cited by 920 · see citing works
From DFT to machine learning: recent approaches to materials science–a review
Schleder, G. R., Padilha, A. C. M., Acosta, C. M., Costa, M., & Fazzio, A. (2019) · Journal of Physics: Materials · doi:10.1088/2515-7639/ab084b · Cited by 852 · see citing works
Chung, Y. G., Haldoupis, E., Bucior, B. J., Haranczyk, M., Lee, S., Zhang, H., Vogiatzis, K. D., Milisavljevic, M., Ling, S., Camp, J. S., et al. (2019) · Journal of Chemical & Engineering Data · doi:10.1021/acs.jced.9b00835 · Cited by 863 · see citing works
Data‐Driven Materials Science: Status, Challenges, and Perspectives
Himanen, L., Geurts, A., Foster, A. S., & Rinke, P. (2019) · Advanced Science · doi:10.1002/advs.201900808 · Cited by 808 · see citing works
A Critical Review of Machine Learning of Energy Materials
Chen, C., Zuo, Y., Ye, W., Li, X., Deng, Z., & Ong, S. P. (2020) · Advanced Energy Materials · doi:10.1002/aenm.201903242 · Cited by 609 · see citing works
Self-citationShih, A. J., Monteiro, M. C. O., Dattila, F., Pavesi, D., Philips, M., da Silva, A. H. M., Vos, R. E., Ojha, K., Park, S., van der Heijden, O., et al. (2022) · Nature Reviews Methods Primers · doi:10.1038/s43586-022-00164-0 · Cited by 521 · see citing works
Ulissi, Z. W., Tang, M. T., Xiao, J., Liu, X., Torelli, D. A., Karamad, M., Cummins, K., Hahn, C., Lewis, N. S., Jaramillo, T. F., et al. (2017) · ACS Catalysis · doi:10.1021/acscatal.7b01648 · Cited by 387 · see citing works
Polak, M. P., & Morgan, D. (2024) · Nature Communications · doi:10.1038/s41467-024-45914-8 · Cited by 365 · see citing works
Nandy, A., Duan, C., Taylor, M. G., Liu, F., Steeves, A. H., & Kulik, H. J. (2021) · Chemical Reviews · doi:10.1021/acs.chemrev.1c00347 · Cited by 358 · see citing works
Jain, A., Hautier, G., Ong, S. P., & Persson, K. (2016) · Journal of Materials Research · doi:10.1557/jmr.2016.80 · Cited by 244 · see citing works
Self-citationA quantitative uncertainty metric controls error in neural network-driven chemical discovery
Janet, J. P., Duan, C., Yang, T., Nandy, A., & Kulik, H. J. (2019) · Chemical Science · doi:10.1039/c9sc02298h · Cited by 243 · see citing works
Innovative Materials Science via Machine Learning
Gao, C., Min, X., Fang, M., Tao, T., Zheng, X., Liu, Y., Wu, X., & Huang, Z. (2022) · Advanced Functional Materials · doi:10.1002/adfm.202108044 · Cited by 198 · see citing works
Virtual screening of inorganic materials synthesis parameters with deep learning
Kim, E., Huang, K., Jegelka, S., & Olivetti, E. (2017) · npj Computational Materials · doi:10.1038/s41524-017-0055-6 · Cited by 190 · see citing works
Strategies and Software for Machine Learning Accelerated Discovery in Transition Metal Chemistry
Nandy, A., Duan, C., Janet, J. P., Gugler, S., & Kulik, H. J. (2018) · Industrial & Engineering Chemistry Research · doi:10.1021/acs.iecr.8b04015 · Cited by 161 · see citing works
Dissolution enables dolomite crystal growth near ambient conditions
Kim, J., Kimura, Y., Puchala, B., Yamazaki, T., Becker, U., & Sun, W. (2023) · Science · doi:10.1126/science.adi3690 · Cited by 138 · see citing works
Janet, J. P., Liu, F., Nandy, A., Duan, C., Yang, T., Lin, S., & Kulik, H. J. (2019) · Inorganic Chemistry · doi:10.1021/acs.inorgchem.9b00109 · Cited by 114 · see citing works
Jain, D., Chaube, S., Khullar, P., Goverapet Srinivasan, S., & Rai, B. (2019) · Physical Chemistry Chemical Physics · doi:10.1039/c9cp03240a · Cited by 105 · see citing works
Bosoni, E., Beal, L., Bercx, M., Blaha, P., Blügel, S., Bröder, J., Callsen, M., Cottenier, S., Degomme, A., Dikan, V., et al. (2023) · Nature Reviews Physics · doi:10.1038/s42254-023-00655-3 · Cited by 89 · see citing works
Duan, C., Janet, J. P., Liu, F., Nandy, A., & Kulik, H. J. (2019) · Journal of Chemical Theory and Computation · doi:10.1021/acs.jctc.9b00057 · Cited by 87 · see citing works
Computational Screening of New Perovskite Materials Using Transfer Learning and Deep Learning
Li, X., Dan, Y., Dong, R., Cao, Z., Niu, C., Song, Y., Li, S., & Hu, J. (2019) · Applied Sciences · doi:10.3390/app9245510 · Cited by 74 · see citing works
Machine learning in materials design: Algorithm and application*
Song, Z., Chen, X., Meng, F., Cheng, G., Wang, C., Sun, Z., & Yin, W.-J. (2020) · Chinese Physics B · doi:10.1088/1674-1056/abc0e3 · Cited by 63 · see citing works
Discovery of direct band gap perovskites for light harvesting by using machine learning
Rath, S., Sudha Priyanga, G., Nagappan, N., & Thomas, T. (2022) · Computational Materials Science · doi:10.1016/j.commatsci.2022.111476 · Cited by 60 · see citing works
Liu, F., Duan, C., & Kulik, H. J. (2020) · The Journal of Physical Chemistry Letters · doi:10.1021/acs.jpclett.0c02288 · Cited by 58 · see citing works
Massuyeau, F., Broux, T., Coulet, F., Demessence, A., Mesbah, A., & Gautier, R. (2022) · Advanced Materials · doi:10.1002/adma.202203879 · Cited by 52 · see citing works
Learn-and-Match Molecular Cations for Perovskites
Park, H., Mall, R., Alharbi, F. H., Sanvito, S., Tabet, N., Bensmail, H., & El-Mellouhi, F. (2019) · The Journal of Physical Chemistry A · doi:10.1021/acs.jpca.9b06208 · Cited by 50 · see citing works
High-bandwidth perovskite photonic sources on silicon
Ren, A., Wang, H., Dai, L., Xia, J., Bai, X., Butler-Caddle, E., Smith, J. A., Lai, H., Ye, J., Li, X., et al. (2023) · Nature Photonics · doi:10.1038/s41566-023-01242-9 · Cited by 49 · see citing works
Combining phonon accuracy with high transferability in Gaussian approximation potential models
George, J., Hautier, G., Bartók, A. P., Csányi, G., & Deringer, V. L. (2020) · The Journal of Chemical Physics · doi:10.1063/5.0013826 · Cited by 44 · see citing works
Self-citationEnumeration of <i>de novo</i> inorganic complexes for chemical discovery and machine learning
Gugler, S., Janet, J. P., & Kulik, H. J. (2020) · Molecular Systems Design & Engineering · doi:10.1039/c9me00069k · Cited by 43 · see citing works
Importance of structural deformation features in the prediction of hybrid perovskite bandgaps
Park, H., Mall, R., Ali, A., Sanvito, S., Bensmail, H., & El-Mellouhi, F. (2020) · Computational Materials Science · doi:10.1016/j.commatsci.2020.109858 · Cited by 39 · see citing works
Duan, C., Chen, S., Taylor, M. G., Liu, F., & Kulik, H. J. (2021) · Chemical Science · doi:10.1039/d1sc03701c · Cited by 40 · see citing works
Generalized convex hull construction for materials discovery
Anelli, A., Engel, E. A., Pickard, C. J., & Ceriotti, M. (2018) · Physical Review Materials · doi:10.1103/physrevmaterials.2.103804 · Cited by 48 · see citing works
Li, C., Hao, H., Xu, B., Shen, Z., Zhou, E., Jiang, D., & Liu, H. (2021) · Computational Materials Science · doi:10.1016/j.commatsci.2021.110714 · Cited by 32 · see citing works
Phase‐Mapper: Accelerating Materials Discovery with AI
Bai, J., Xue, Y., Bjorck, J., Bras, R. L., Rappazzo, B., Bernstein, R., Suram, S. K., van Dover, R. B., Gregoire, J. M., & Gomes, C. P. (2018) · AI Magazine · doi:10.1609/aimag.v39i1.2785 · Cited by 25 · see citing works
Blum, V., Asahi, R., Autschbach, J., Bannwarth, C., Bihlmayer, G., Blügel, S., Burns, L. A., Crawford, T. D., Dawson, W., de Jong, W. A., et al. (2024) · Electronic Structure · doi:10.1088/2516-1075/ad48ec · Cited by 24 · see citing works
Self-citationZhao, R., Xing, B., Mu, H., Fu, Y., & Zhang, L. (2022) · Chinese Physics B · doi:10.1088/1674-1056/ac5d2d · Cited by 21 · see citing works
A review on machine learning-guided design of energy materials
Kim, S., Xu, J., Shang, W., Xu, Z., Lee, E., & Luo, T. (2024) · Progress in Energy · doi:10.1088/2516-1083/ad7220 · Cited by 19 · see citing works
Williams, L., Mukherjee, A., Dasgupta, A., & Rajan, K. (2021) · Journal of Materials Chemistry C · doi:10.1039/d1tc01972d · Cited by 11 · see citing works
VASPilot: MCP-facilitated multi-agent intelligence for autonomous VASP simulations
Liu 刘, J. 家., Zhu 朱, T. 天., Ye 叶, C. 财., Fang 方, Z. 忠., Weng 翁, H. 红., & Wu 吴, Q. 泉. (2025) · Chinese Physics B · doi:10.1088/1674-1056/ae0681 · Cited by 7 · see citing works
Chen, Z., Chen, S., Ning, Y., Zhang, Q., Wang, B., Yu, B., Li, Y., Liao, Z., Wei, C., Lu, Z., et al. (2024) · arXiv · doi:10.48550/arxiv.2410.05080 · Cited by 7 · see citing works
Autonomous alloy composition optimization using molecular dynamics guided by a large language model
Roy, A., Devanathan, R., Nartu, M. S. K. K. Y., & Joshi, V. V. (2026) · Scripta Materialia · doi:10.1016/j.scriptamat.2025.117048 · Cited by 5 · see citing works
Ock, J., Meda, R. S., Vinchurkar, T., Jadhav, Y., & Barati Farimani, A. (2026) · Digital Discovery · doi:10.1039/d5dd00298b · Cited by 3 · see citing works
Evaluating Large Language Models in Scientific Discovery
Song, Z., Lu, J., Du, Y., Yu, B., Pruyn, T. M., Huang, Y., Guo, K., Luo, X., Qu, Y., Qu, Y., et al. (2025) · arXiv · Cited by 3 · see citing works
Baibakova, V., & Serov, A. (2026) · Energy and AI · doi:10.1016/j.egyai.2026.100710 · Cited by 2 · see citing works
Wang, X., Zeng, Q., Xu, D.-H., Zhang, L., Jiang, G., & Yang, M. (2026) · Journal of Materials Informatics · doi:10.20517/jmi.2025.69 · Cited by 2 · see citing works
SmartCIF: A context-aware multi-agent system for automated preprocessing and curation of MOF CIFs
Zhang, Q., Zhang, C., & Wang, L. (2026) · Physical Chemistry Chemical Physics · doi:10.1039/d6cp00100a · Cited by 1 · see citing works
- Authors
- Ong, S. P., Richards, W. D., Jain, A., Hautier, G., Kocher, M., Cholia, S., Gunter, D., Chevrier, V. L., Persson, K. A., & Ceder, G.
- Affiliations
- Massachusetts Institute of Technology (US)
- Lawrence Berkeley National Laboratory (US)
- UCLouvain (BE)
- 3M (United States) (US)
- Corresponding author
- Ong, Shyue Ping
- ORCID
- Venue
- Computational Materials Science
- Publisher
- Elsevier BV
- Published
- 2013-02
- Volume
- 68
- Pages
- 314-319
- ISSN
- 0927-0256 (ISSN-L)
- OpenAlex
- W2015197254
- Cited by
- 4,534
- References
- 2
- Citations by year
- 2026: 833 · 2025: 697 · 2024: 654 · 2023: 502 · 2022: 459 · 2021: 377 · 2020: 321 · 2019: 221 · 2018: 167 · 2017: 116 · 2016: 80 · 2015: 65 · 2014: 30 · 2013: 9 · 2012: 2
- FWCI
- 13.82
- Type
- journal article
- Language
- en
- Open access
- green
- escholarship.org
- Locations
- Computational Materials Science (publishedVersion)
- eScholarship (California Digital Library) (submittedVersion)
- OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information) (submittedVersion)
- DIAL (Catholic University of Leuven) (submittedVersion)
- DSpace@MIT (Massachusetts Institute of Technology) (submittedVersion, cc-by-nc-nd)
- Funders
- U.S. Department of Energy (DE‐AC02‐05CH1123, DEFG0296ER45571, DE‐FG02‐, Contract No. DE-AC02-05CH1123, FG0296ER45571, AC02-05CH1123, DE-AC02-)
- National Energy Research Scientific Computing Center (DE-AC02-05CH1123)
- Basic Energy Sciences (DE-AC02, DE-AC0205CH1123, DE-FG02, No. DE-AC02-05CH1123)
- Laboratory Directed Research and Development
- Lawrence Berkeley National Laboratory (DE‐AC02‐05CH1123)
- Topics
- Physical Sciences › Materials Science › Materials Chemistry › Machine Learning in Materials Science
- Physical Sciences › Engineering › Electrical and Electronic Engineering › Advancements in Battery Materials
- Physical Sciences › Physics and Astronomy › Atomic and Molecular Physics, and Optics › Advanced Chemical Physics Studies
- Keywords
- pymatgen, crystal structure analysis, thermodynamic analysis, electrochemical stability, lithium-ion battery anodes, first-principles calculations
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review