Yeast metabolic engineering for hemicellulosic ethanol production

Towards industrial pentose-fermenting yeast strains

Hahn‐Hägerdal, B., Karhumaa, K., Fonseca, C., Spencer‐Martins, I., & Gorwa‐Grauslund, M. F. (2007) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-006-0827-2 · Cited by 784

Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis

Jeffries, T. W., Grigoriev, I. V., Grimwood, J., Laplaza, J. M., Aerts, A. L., Salamov, A. A., Schmutz, J., Lindquist, E., Dehal, P., Shapiro, H., et al. (2007) · Nature Biotechnology · doi:10.1038/nbt1290 · Cited by 492

Comparison of the xylose reductase-xylitol dehydrogenase and the xylose isomerase pathways for xylose fermentation by recombinant Saccharomyces cerevisiae

Karhumaa, K., Sánchez, R. G., Hahn‐Hägerdal, B., & Gorwa‐Grauslund, M. F. (2007) · Microbial Cell Factories · doi:10.1186/1475-2859-6-5 · Cited by 292

Metabolic Engineering for Pentose Utilization in Saccharomyces cerevisiae

Hahn‐Hägerdal, B., Karhumaa, K., Jeppsson, M., & Gorwa‐Grauslund, M. F. (2007) · Springer eBooks · doi:10.1007/10_2007_062 · Cited by 280

Rapid whole-genome mutational profiling using next-generation sequencing technologiesPreprint

Smith, D. R., Quinlan, A. R., Peckham, H. E., Makowsky, K., Tao, W., Woolf, B., Shen, L., Donahue, W. F., Tusneem, N. A., Strömberg, M. P., et al. (2008) · Genome Research · doi:10.1101/gr.077776.108 · Cited by 260

Novel Evolutionary Engineering Approach for Accelerated Utilization of Glucose, Xylose, and Arabinose Mixtures by Engineered Saccharomyces cerevisiae Strains

Wisselink, H. W., Toirkens, M. J., Wu, Q., Pronk, J. T., & van Maris, A. J. A. (2009) · Applied and Environmental Microbiology · doi:10.1128/aem.02268-08 · Cited by 247

Development of Efficient Xylose Fermentation in Saccharomyces cerevisiae: Xylose Isomerase as a Key Component

van Maris, A. J. A., Winkler, A. A., Kuyper, M., de Laat, W. T. A. M., van Dijken, J. P., & Pronk, J. T. (2007) · Advances in biochemical engineering, biotechnology · doi:10.1007/10_2007_057 · Cited by 245

Xylose transport studies with xylose-utilizing Saccharomyces cerevisiae strains expressing heterologous and homologous permeases

Saloheimo, A., Rauta, J., Stasyk, O. V., Sibirny, A. А., Penttilä, M. E., & Ruohonen, L. (2006) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-006-0747-1 · Cited by 210

Complete Reversal of Coenzyme Specificity of Xylitol Dehydrogenase and Increase of Thermostability by the Introduction of Structural Zinc

Watanabe, S., Kodaki, T., & Makino, K. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m409443200 · Cited by 195

Ethanol production from xylose by recombinant Saccharomyces cerevisiae expressing protein-engineered NADH-preferring xylose reductase from Pichia stipitis

Watanabe, S., Saleh, A. A., Pack, S. P., Annaluru, N., Kodaki, T., & Makino, K. (2007) · Microbiology · doi:10.1099/mic.0.2007/007856-0 · Cited by 189

Hemicelluloses for fuel ethanol: A review

Gírio, F. M., Fonseca, C., Carvalheiro, F., Duarte, L. C., Marques, S., & Bogel‐Łukasik, R. (2010) · Bioresource Technology · doi:10.1016/j.biortech.2010.01.088 · Cited by 1,648

Deconstruction of lignocellulosic biomass with ionic liquids

Brandt, A., Gräsvik, J., Hallett, J. P., & Welton, T. (2013) · Green Chemistry · doi:10.1039/c2gc36364j · Cited by 1,557

Technological trends, global market, and challenges of bio-ethanol production

Mussatto, S. I., Dragone, G., Guimarães, P. M. R., Silva, J. P. A., Carneiro, L. M., Roberto, I. C., Vicente, A. A., Domingues, L., & Teixeira, J. A. (2010) · Biotechnology Advances · doi:10.1016/j.biotechadv.2010.07.001 · Cited by 730

The emergence of adaptive laboratory evolution as an efficient tool for biological discovery and industrial biotechnology

Sandberg, T. E., Salazar, M. J., Weng, L. L., Palsson, B. Ø., & Feist, A. M. (2019) · Metabolic Engineering · doi:10.1016/j.ymben.2019.08.004 · Cited by 585

Improving industrial yeast strains: exploiting natural and artificial diversity

Steensels, J., Snoek, T., Meersman, E., Nicolino, M. P., Voordeckers, K., & Verstrepen, K. J. (2014) · FEMS Microbiology Reviews · doi:10.1111/1574-6976.12073 · Cited by 513

Cellulosic ethanol production: Progress, challenges and strategies for solutions

Liu, C., Xiao, Y., Xia, X., Zhao, X., Peng, L., Srinophakun, P., & Bai, F. (2019) · Biotechnology Advances · doi:10.1016/j.biotechadv.2019.03.002 · Cited by 418

Plant cell wall polymers as precursors for biofuels

Pauly, M., & Keegstra, K. (2010) · Current Opinion in Plant Biology · doi:10.1016/j.pbi.2009.12.009 · Cited by 337

Xylose isomerase overexpression along with engineering of the pentose phosphate pathway and evolutionary engineering enable rapid xylose utilization and ethanol production by Saccharomyces cerevisiae

Zhou, H., Cheng, J.-S., Wang, B. L., Fink, G. R., & Stephanopoulos, G. (2012) · Metabolic Engineering · doi:10.1016/j.ymben.2012.07.011 · Cited by 287

Development of yeast cell factories for consolidated bioprocessing of lignocellulose to bioethanol through cell surface engineering

Hasunuma, T., & Kondo, A. (2011) · Biotechnology Advances · doi:10.1016/j.biotechadv.2011.10.011 · Cited by 259

Customized optimization of metabolic pathways by combinatorial transcriptional engineering

Du, J., Yuan, Y., Si, T., Lian, J., & Zhao, H. (2012) · Nucleic Acids Research · doi:10.1093/nar/gks549 · Cited by 239

Engineering of plant cell walls for enhanced biofuel production

Loqué, D., Scheller, H. V., & Pauly, M. (2015) · Current Opinion in Plant Biology · doi:10.1016/j.pbi.2015.05.018 · Cited by 225

Advances in consolidated bioprocessing systems for bioethanol and butanol production from biomass: a comprehensive review

Salehi Jouzani, G., & Taherzadeh, M. J. (2015) · Biofuel Research Journal · doi:10.18331/brj2015.2.1.4 · Cited by 224

Comparative genomics of xylose-fermenting fungi for enhanced biofuel production

Wohlbach, D. J., Kuo, A., Sato, T. K., Potts, K. M., Salamov, A. A., LaButti, K. M., Sun, H., Clum, A., Pangilinan, J. L., Lindquist, E., et al. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1103039108 · Cited by 212

Polygeneration as a future sustainable energy solution – A comprehensive review

Jana, K., Ray, A., Mansouri, M., Assadi, M., & De, S. K. (2017) · Applied Energy · doi:10.1016/j.apenergy.2017.05.129 · Cited by 208

Bioethanol production from pentose sugars: Current status and future prospects

Kuhad, R. C., Gupta, R., Khasa, Y. P., Singh, A., & Zhang, Y.-H. P. (2011) · Renewable and Sustainable Energy Reviews · doi:10.1016/j.rser.2011.07.058 · Cited by 205

Recombination machinery engineering facilitates metabolic engineering of the industrial yeast Pichia pastoris

Cai, P., Duan, X., Wu, X., Gao, L., Ye, M., & Zhou, Y. J. (2021) · Nucleic Acids Research · doi:10.1093/nar/gkab535 · Cited by 205

Rewiring yeast sugar transporter preference through modifying a conserved protein motif

Young, E. M., Tong, A., Bui, H., Spofford, C., & Alper, H. S. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1311970111 · Cited by 197

Plant cell walls to ethanol

Jordan, D. B., Bowman, M. J., Braker, J. D., Dien, B. S., Hector, R. E., Lee, C. C., Mertens, J. A., & Wagschal, K. C. (2012) · Biochemical Journal · doi:10.1042/bj20111922 · Cited by 185

Conceptual net energy output for biofuel production from lignocellulosic biomass through biorefining

Zhu, J. Y., & Zhuang, X. (2012) · Progress in Energy and Combustion Science · doi:10.1016/j.pecs.2012.03.007 · Cited by 164

Optimizing pentose utilization in yeast: the need for novel tools and approaches

Young, E. M., Lee, S., & Alper, H. S. (2010) · Biotechnology for Biofuels · doi:10.1186/1754-6834-3-24 · Cited by 158

Directed Evolution of Xylose Isomerase for Improved Xylose Catabolism and Fermentation in the Yeast Saccharomyces cerevisiae

Lee, S., Jellison, T., & Alper, H. S. (2012) · Applied and Environmental Microbiology · doi:10.1128/aem.01419-12 · Cited by 153

A molecular transporter engineering approach to improving xylose catabolism in Saccharomyces cerevisiae

Young, E. M., Comer, A. D., Huang, H., & Alper, H. S. (2012) · Metabolic Engineering · doi:10.1016/j.ymben.2012.03.004 · Cited by 138

Valorisation of xylose to renewable fuels and chemicals, an essential step in augmenting the commercial viability of lignocellulosic biorefineries

Narisetty, V., Cox, R., Bommareddy, R. R., Agrawal, D., Ahmạd, E., Pant, K. K., Chandel, A. K., Bhatia, S. K., Kumar, D., Binod, P., et al. (2021) · Sustainable Energy & Fuels · doi:10.1039/d1se00927c · Cited by 139

Biogas Production from Algae and Cyanobacteria Through Anaerobic Digestion: A Review, Analysis, and Research Needs

Bohutskyi, P., & Bouwer, E. J. (2012) · Springer eBooks · doi:10.1007/978-1-4614-3348-4_36 · Cited by 139

Scale‐up and integration of alkaline hydrogen peroxide pretreatment, enzymatic hydrolysis, and ethanolic fermentation

Banerjee, G., Car, S., Liu, T., Williams, D. L., Meza, S. L., Walton, J. D., & Hodge, D. B. (2011) · Biotechnology and Bioengineering · doi:10.1002/bit.24385 · Cited by 132

An analysis of net energy production and feedstock availability for biobutanol and bioethanol

Swana, J., Yan, Y. Z., Behnam, M., & Thompson, R. W. (2010) · Bioresource Technology · doi:10.1016/j.biortech.2010.08.051 · Cited by 125

Ethanol production from lignocellulosic hydrolysates using engineered Saccharomyces cerevisiae harboring xylose isomerase-based pathway

Ko, J. K., Um, Y., Woo, H. M., Kim, K. H., & Lee, S. (2016) · Bioresource Technology · doi:10.1016/j.biortech.2016.02.124 · Cited by 125

Genome-scale metabolic reconstructions of Pichia stipitis and Pichia pastoris and in silico evaluation of their potentials

Caspeta, L., Shoaie, S., Ågren, R., Nookaew, I., & Nielsen, J. (2012) · BMC Systems Biology · doi:10.1186/1752-0509-6-24 · Cited by 123

Engineering of Saccharomyces cerevisiae as a consolidated bioprocessing host to produce cellulosic ethanol: Recent advancements and current challenges

Sharma, J., Kumar, V., Prasad, R., & Gaur, N. A. (2022) · Biotechnology Advances · doi:10.1016/j.biotechadv.2022.107925 · Cited by 119

Systematic and evolutionary engineering of a xylose isomerase-based pathway in

Lee, S., Jellison, T., & Alper, H. S. (2014) · Biotechnology for Biofuels · doi:10.1186/s13068-014-0122-x · Cited by 118

Ethanol production from SPORL-pretreated lodgepole pine: preliminary evaluation of mass balance and process energy efficiency

Zhu, J., Zhu, W., O’Bryan, P. J., Dien, B. S., Tian, S., Gleisner, R., & Pan, X. (2010) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-009-2408-7 · Cited by 114

Bioethanol from Lignocellulosic Biomass

Zhao, X., Zi, L., Bai, F., Lin, H., Hao, X.-M., Yue, G., & Ho, N. W. Y. (2011) · Advances in biochemical engineering, biotechnology · doi:10.1007/10_2011_129 · Cited by 114

Microbial Degradation of Lignocellulosic Biomass

de Souza, W. R. (2013) · InTech eBooks · doi:10.5772/54325 · Cited by 112

Stress‐related challenges in pentose fermentation to ethanol by the yeast Saccharomyces cerevisiae

de Almeida, J. R. M., Runquist, D., Nogué, V. S. I., Lidén, G., & Gorwa‐Grauslund, M. F. (2011) · Biotechnology Journal · doi:10.1002/biot.201000301 · Cited by 111

Repeated-batch fermentation of lignocellulosic hydrolysate to ethanol using a hybrid Saccharomyces cerevisiae strain metabolically engineered for tolerance to acetic and formic acids

Sanda, T., Hasunuma, T., Matsuda, F., & Kondo, A. (2011) · Bioresource Technology · doi:10.1016/j.biortech.2011.06.028 · Cited by 108

Engineering of plants with improved properties as biofuels feedstocks by vessel-specific complementation of xylan biosynthesis mutants

Petersen, P. D., Lau, J., Ebert, B., Yang, F., Verhertbruggen, Y., Kim, J. S., Varanasi, P., Suttangkakul, A., Auer, M., Loqué, D., et al. (2012) · Biotechnology for Biofuels · doi:10.1186/1754-6834-5-84 · Cited by 108

Directed Evolution Reveals Unexpected Epistatic Interactions That Alter Metabolic Regulation and Enable Anaerobic Xylose Use by Saccharomyces cerevisiae

Sato, T. K., Tremaine, M. T., Parreiras, L. S., Hebert, A. S., Myers, K. S., Higbee, A. J., Sardi, M. I., McIlwain, S. J., Ong, I. M., Breuer, R. J., et al. (2016) · PLoS Genetics · doi:10.1371/journal.pgen.1006372 · Cited by 107

Unraveling the genetic basis of xylose consumption in engineered Saccharomyces cerevisiae strains

dos Santos, L. V., Carazzolle, M. F., Nagamatsu, S. T., Sampaio, N. M. V., Almeida, L. D., Pirolla, R. A. S., Borelli, G., Côrrea, T. L. R., Argueso, J. L., & Pereira, G. A. G. (2016) · Scientific Reports · doi:10.1038/srep38676 · Cited by 93

Improving simultaneous saccharification and co-fermentation of pretreated wheat straw using both enzyme and substrate feeding

Olofsson, K., Palmqvist, B., & Lidén, G. (2010) · Biotechnology for Biofuels · doi:10.1186/1754-6834-3-17 · Cited by 92

Dekkera/Brettanomyces yeasts for ethanol production from renewable sources under oxygen-limited and low-pH conditions

Galafassi, S., Merico, A., Pizza, F., Hellborg, L., Molinari, F., Piškur, J., & Compagno, C. (2010) · Journal of Industrial Microbiology & Biotechnology · doi:10.1007/s10295-010-0885-4 · Cited by 91

Evolutionary engineering of Saccharomyces cerevisiae for efficient aerobic xylose consumption

Scalcinati, G., Otero, J. M., Vleet, J. R. H., Jeffries, T. W., Olsson, L., & Nielsen, J. (2012) · FEMS Yeast Research · doi:10.1111/j.1567-1364.2012.00808.x · Cited by 89

Low pH d-xylonate production with Pichia kudriavzevii

Toivari, M. H., Vehkomäki, M., Nygård, Y., Penttilä, M. E., Ruohonen, L., & Wiebe, M. G. (2013) · Bioresource Technology · doi:10.1016/j.biortech.2013.01.157 · Cited by 92

Xylose and xylose/glucose co-fermentation by recombinant Saccharomyces cerevisiae strains expressing individual hexose transporters

Gonçalves, D. L., Matsushika, A., de Sales, B. B., Goshima, T., Bon, E. P. S., & Stambuk, B. U. (2014) · Enzyme and Microbial Technology · doi:10.1016/j.enzmictec.2014.05.003 · Cited by 88

Effect of water extraction on sugars recovery from steam exploded olive tree pruning

Ballesteros, I., Ballesteros, M., Cara, C., Sáez, F., Castro, E., Manzanares, P., Negro, M. J., & Oliva, J. M. (2011) · Bioresource Technology · doi:10.1016/j.biortech.2011.03.077 · Cited by 88

Engineering industrial Saccharomyces cerevisiae strains for xylose fermentation and comparison for switchgrass conversion

Hector, R. E., Dien, B. S., Cotta, M. A., & Qureshi, N. (2010) · Journal of Industrial Microbiology & Biotechnology · doi:10.1007/s10295-010-0896-1 · Cited by 86

Growth and fermentation of D-xylose by Saccharomyces cerevisiae expressing a novel D-xylose isomerase originating from the bacterium Prevotella ruminicola TC2-24

Hector, R. E., Dien, B. S., Cotta, M. A., & Mertens, J. A. (2013) · Biotechnology for Biofuels · doi:10.1186/1754-6834-6-84 · Cited by 85

Fermentation of mixed glucose-xylose substrates by engineered strains of Saccharomyces cerevisiae: role of the coenzyme specificity of xylose reductase, and effect of glucose on xylose utilization

Krahulec, S., Petschacher, B., Wallner, M., Longus, K., Klimacek, M., & Nidetzky, B. (2010) · Microbial Cell Factories · doi:10.1186/1475-2859-9-16 · Cited by 84

Transcription analysis of recombinant industrial and laboratory Saccharomyces cerevisiae strains reveals the molecular basis for fermentation of glucose and xylose

Matsushika, A., Goshima, T., & Hoshino, T. (2014) · Microbial Cell Factories · doi:10.1186/1475-2859-13-16 · Cited by 84

Engineering a wild-type diploid Saccharomyces cerevisiae strain for second-generation bioethanol production

Li, H., Shen, Y., Wu, M., Hou, J., Jiao, C., Li, Z., Liu, X., & Bao, X. (2016) · Bioresources and Bioprocessing · doi:10.1186/s40643-016-0126-4 · Cited by 84

Consolidated Bioprocessing of Lignocellulosic Feedstocks for Ethanol Fuel Production

Schuster, B. G., & Chinn, M. S. (2012) · BioEnergy Research · doi:10.1007/s12155-012-9278-z · Cited by 83

Modular Glucuronoxylan-Specific Xylanase with a Family CBM35 Carbohydrate-Binding Module

Valenzuela, S. V., Dı́az, P., & Pastor, F. I. J. (2012) · Applied and Environmental Microbiology · doi:10.1128/aem.07932-11 · Cited by 83

Enabling glucose/xylose co-transport in yeast through the directed evolution of a sugar transporter

Li, H., Schmitz, O., & Alper, H. S. (2016) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-016-7879-8 · Cited by 82

Efficient fermentation of xylose to ethanol at high formic acid concentrations by metabolically engineered Saccharomyces cerevisiae

Hasunuma, T., Sung, K.-M., Sanda, T., Yoshimura, K., Matsuda, F., & Kondo, A. (2011) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-011-3085-x · Cited by 81

Characterization of non-oxidative transaldolase and transketolase enzymes in the pentose phosphate pathway with regard to xylose utilization by recombinant Saccharomyces cerevisiae

Matsushika, A., Goshima, T., Fujii, T., Inoue, H., Sawayama, S., & Yano, S. (2012) · Enzyme and Microbial Technology · doi:10.1016/j.enzmictec.2012.03.008 · Cited by 78

Enhancing the Co-utilization of Biomass-Derived Mixed Sugars by Yeasts

Gao, M., Ploessl, D. S., & Shao, Z. (2019) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.03264 · Cited by 79

Systematic optimization of gene expression of pentose phosphate pathway enhances ethanol production from a glucose/xylose mixed medium in a recombinant Saccharomyces cerevisiae

Kobayashi, Y., Sahara, T., Ohgiya, S., Kamagata, Y., & Fujimori, K. E. (2018) · AMB Express · doi:10.1186/s13568-018-0670-8 · Cited by 74

Characterization of a Family GH5 Xylanase with Activity on Neutral Oligosaccharides and Evaluation as a Pulp Bleaching Aid

Gallardo, Ó., Fernández, M. F., Valls, C., Valenzuela, S. V., Roncero, M. B., Vidal, T., Dı́az, P., & Pastor, F. I. J. (2010) · Applied and Environmental Microbiology · doi:10.1128/aem.00871-10 · Cited by 68

Bioethanol a Microbial Biofuel Metabolite; New Insights of Yeasts Metabolic Engineering

Selim, K. A., El-Ghwas, D. E., Easa, S., & Hassan, M. I. A. (2018) · Fermentation · doi:10.3390/fermentation4010016 · Cited by 67

Dynamic metabolomics differentiates between carbon and energy starvation in recombinant Saccharomyces cerevisiae fermenting xylose

Bergdahl, B. M., Heer, D., Sauer, U., Hahn‐Hägerdal, B., & van Niel, E. W. J. (2012) · Biotechnology for Biofuels · doi:10.1186/1754-6834-5-34 · Cited by 65

The Xylose Metabolizing Yeast Spathaspora passalidarum is a Promising Genetic Treasure for Improving Bioethanol Production

Selim, K. A., Easa, S., & El‐Diwany, A. I. (2020) · Fermentation · doi:10.3390/fermentation6010033 · Cited by 62

Bioconversion of d-xylose to d-xylonate with Kluyveromyces lactis

Nygård, Y., Toivari, M. H., Penttilä, M. E., Ruohonen, L., & Wiebe, M. G. (2011) · Metabolic Engineering · doi:10.1016/j.ymben.2011.04.001 · Cited by 62

Development of microbial cell factories for bio-refinery through synthetic bioengineering

Kondo, A., Ishii, J., Hara, K. Y., Hasunuma, T., & Matsuda, F. (2012) · Journal of Biotechnology · doi:10.1016/j.jbiotec.2012.05.021 · Cited by 62

Metabolic engineering and classical selection of the methylotrophic thermotolerant yeast Hansenula polymorpha for improvement of high-temperature xylose alcoholic fermentation

Kurylenko, O. O., Ruchała, J., Hryniv, O. B., Abbas, C. A., Dmytruk, K. V., & Sibirny, A. А. (2014) · Microbial Cell Factories · doi:10.1186/s12934-014-0122-3 · Cited by 61

Fermentation of Xylose Causes Inefficient Metabolic State Due to Carbon/Energy Starvation and Reduced Glycolytic Flux in Recombinant Industrial Saccharomyces cerevisiae

Matsushika, A., Nagashima, A., Goshima, T., & Hoshino, T. (2013) · PLoS ONE · doi:10.1371/journal.pone.0069005 · Cited by 59

Investigating xylose metabolism in recombinant Saccharomyces cerevisiae via 13C metabolic flux analysis

Feng, X., & Zhao, H. (2013) · Microbial Cell Factories · doi:10.1186/1475-2859-12-114 · Cited by 58

Engineering Saccharomyces cerevisiae for next generation ethanol production

den Haan, R., Kroukamp, H., Mert, M. J., Viljoen‐Bloom, M., Görgens, J. F., & van Zyl, W. H. (2013) · Journal of Chemical Technology & Biotechnology · doi:10.1002/jctb.4068 · Cited by 57

The isolation of pentose-assimilating yeasts and their xylose fermentation potential

Martins, G. M., Bocchini, D. A., Bezerra-Bussoli, C., Pagnocca, F. C., Boscolo, M., Monteiro, D. A., da Silva, R., & Gomes, E. (2017) · Brazilian Journal of Microbiology · doi:10.1016/j.bjm.2016.11.014 · Cited by 57

Metabolic engineering and transcriptomic analysis of Saccharomyces cerevisiae producing p-coumaric acid from xylose

Zamfir, G. M. B., Prado, A. R., Campbell, K., Borodina, I., Chen, Y., & Nielsen, J. (2019) · Microbial Cell Factories · doi:10.1186/s12934-019-1244-4 · Cited by 57

Increased drought tolerance in plants engineered for low lignin and low xylan content

Yan, J., Aznar, A., Chalvin, C., Birdseye, D. S., Baidoo, E. E. K., Eudes, A., Shih, P. M., Loqué, D., Zhang, A., & Scheller, H. V. (2018) · Biotechnology for Biofuels · doi:10.1186/s13068-018-1196-7 · Cited by 55

Identification of a xylose reductase gene in the xylose metabolic pathway of Kluyveromyces marxianus NBRC1777

Zhang, B., Zhang, L., Wang, D., Gao, X., & Hong, J. (2011) · Journal of Industrial Microbiology & Biotechnology · doi:10.1007/s10295-011-0990-z · Cited by 54

Saccharomyces cerevisiae engineered for xylose metabolism requires gluconeogenesis and the oxidative branch of the pentose phosphate pathway for aerobic xylose assimilation

Hector, R. E., Mertens, J. A., Bowman, M. J., Nichols, N. N., Cotta, M. A., & Hughes, S. R. (2011) · Yeast · doi:10.1002/yea.1893 · Cited by 52

Construction of efficient xylose utilizing Pichia pastoris for industrial enzyme production

Li, P., Sun, H., Chen, Z., Li, Y., & Zhu, T. (2015) · Microbial Cell Factories · doi:10.1186/s12934-015-0206-8 · Cited by 51

Construction of Xylose Dehydrogenase Displayed on the Surface of Bacteria Using Ice Nucleation Protein for Sensitive d -Xylose Detection

Liang, B., Li, L., Mascin, M., & Liu, A. (2011) · Analytical Chemistry · doi:10.1021/ac202513u · Cited by 51

Harnessing Genetic Diversity in Saccharomyces cerevisiae for Fermentation of Xylose in Hydrolysates of Alkaline Hydrogen Peroxide-Pretreated Biomass

Sato, T. K., Liu, T., Parreiras, L. S., Williams, D. L., Wohlbach, D. J., Bice, B. D., Ong, I. M., Breuer, R. J., Li, Q., Busalacchi, D., et al. (2013) · Applied and Environmental Microbiology · doi:10.1128/aem.01885-13 · Cited by 50

Biotechnology and synthetic biology approaches for metabolic engineering of bioenergy crops

Shih, P. M., Liang, Y., & Loqué, D. (2016) · The Plant Journal · doi:10.1111/tpj.13176 · Cited by 50

The glucose/xylose facilitator Gxf1 from Candida intermedia expressed in a xylose-fermenting industrial strain of Saccharomyces cerevisiae increases xylose uptake in SSCF of wheat straw

Fonseca, C., Olofsson, K., Ferreira, C., Runquist, D., Fonseca, L. L., Hahn‐Hägerdal, B., & Lidén, G. (2011) · Enzyme and Microbial Technology · doi:10.1016/j.enzmictec.2011.02.010 · Cited by 46

Flocculating Zymomonas mobilis is a promising host to be engineered for fuel ethanol production from lignocellulosic biomass

Zhao, N., Bai, Y., Liu, C., Zhao, X., Xu, J., & Bai, F. (2013) · Biotechnology Journal · doi:10.1002/biot.201300367 · Cited by 49

Long‐term adaptation of Saccharomyces cerevisiae to the burden of recombinant insulin production

Seresht, A. K., da Cruz, A. L. B., de Hulster, E. A. F., Hebly, M., Palmqvist, E. A., van Gulik, W. M., Daran, J.-M. G., Pronk, J. T., & Lisbeth Olsson, A. (2013) · Biotechnology and Bioengineering · doi:10.1002/bit.24927 · Cited by 48

Single-step, single-organism bioethanol production and bioconversion of lignocellulose waste materials by phlebioid fungal species

Mattila, H., Kuuskeri, J., & Lundell, T. (2016) · Bioresource Technology · doi:10.1016/j.biortech.2016.11.082 · Cited by 45

Gene stacking of multiple traits for high yield of fermentable sugars in plant biomass

Aznar, A., Chalvin, C., Shih, P. M., Maimann, M., Ebert, B., Birdseye, D. S., Loqué, D., & Scheller, H. V. (2018) · Biotechnology for Biofuels · doi:10.1186/s13068-017-1007-6 · Cited by 45

Disruption of PHO13 improves ethanol production via the xylose isomerase pathway

Bamba, T., Hasunuma, T., & Kondo, A. (2016) · AMB Express · doi:10.1186/s13568-015-0175-7 · Cited by 43

Au@ h -Al 2 O 3 analogic yolk–shell nanocatalyst for highly selective synthesis of biomass-derived d -xylonic acid via regulation of structure effects

Ma, J., Liu, Z., Song, J., Zhong, L., Xiao, D., Xi, H., Li, X., Sun, R., & Peng, X. (2018) · Green Chemistry · doi:10.1039/c8gc02618a · Cited by 42

Insights from the Fungus Fusarium oxysporum Point to High Affinity Glucose Transporters as Targets for Enhancing Ethanol Production from Lignocellulose

Ali, S. S., Nugent, B., Mullins, E. D., & Doohan, F. M. (2013) · PLoS ONE · doi:10.1371/journal.pone.0054701 · Cited by 42

Disruption of the transcription factors Thi2p and Nrm1p alleviates the post-glucose effect on xylose utilization in Saccharomyces cerevisiae

Wei, S., Liu, Y., Wu, M., Ma, T., Bai, X., Hou, J., Shen, Y., & Bao, X. (2018) · Biotechnology for Biofuels · doi:10.1186/s13068-018-1112-1 · Cited by 41

Process engineering of cellulosic n-butanol production from corn-based biomass using Clostridium cellulovorans

Ou, J., Xu, N., Ernst, P. J., Ma, C., Mock, M. B., Goh, K., Zhao, J., Zhou, L., Yang, S., & Liu, M. (2017) · Process Biochemistry · doi:10.1016/j.procbio.2017.07.009 · Cited by 40

Synergistic effects of TAL1 over-expression and PHO13 deletion on the weak acid inhibition of xylose fermentation by industrial Saccharomyces cerevisiae strain

Li, Y., Gou, Z.-X., Liu, Z.-S., Tang, Y., Akamatsu, T., & Kida, K. (2014) · Biotechnology Letters · doi:10.1007/s10529-014-1581-7 · Cited by 40

Novel strategies to improve co-fermentation of pentoses with D-glucose by recombinant yeast strains in lignocellulosic hydrolysates

Oreb, M., Dietz, H., Farwick, A., & Boles, E. (2012) · Bioengineered · doi:10.4161/bioe.21444 · Cited by 39

Simultaneous saccharification and fermentation of dilute alkaline-pretreated corn stover for enhanced butanol production byClostridium saccharobutylicumDSM 13864

Dong, J., Ding, J.-C., Zhang, Y., Ma, L., Xu, G., Han, R., & Ni, Y. (2016) · FEMS Microbiology Letters · doi:10.1093/femsle/fnw003 · Cited by 38

Metabolic engineering ofEscherichia colifor biofuel production

Xu, P., & Koffas, M. A. G. (2010) · Biofuels · doi:10.4155/bfs.10.13 · Cited by 37

Recent advances in the metabolic engineering of Corynebacterium glutamicum for the production of lactate and succinate from renewable resources

Tsuge, Y., Hasunuma, T., & Kondo, A. (2014) · Journal of Industrial Microbiology & Biotechnology · doi:10.1007/s10295-014-1538-9 · Cited by 37

Steam pretreatment and fermentation of the straw material “Paja Brava” using simultaneous saccharification and co-fermentation

Carrasco, C., Baudel, H. M., Peñarrieta, J. M., Solano, C., Tejeda, L., Roslander, C., Galbe, M., & Lidén, G. (2010) · Journal of Bioscience and Bioengineering · doi:10.1016/j.jbiosc.2010.10.009 · Cited by 35

Efficient base-free oxidation of monosaccharide into sugar acid under mild conditions using hierarchical porous carbon supported gold catalysts

Meng, X., Li, Z., Li, D., Huang, Y., Ma, J., Liu, C., & Peng, X. (2020) · Green Chemistry · doi:10.1039/c9gc04333k · Cited by 35

Enhancement of ethanol production from green liquor–ethanol-pretreated sugarcane bagasse by glucose–xylose cofermentation at high solid loadings with mixed Saccharomyces cerevisiae strains

You, Y., Li, P., Lei, F., Xing, Y., & Jiang, J. (2017) · Biotechnology for Biofuels · doi:10.1186/s13068-017-0771-7 · Cited by 34

Consolidated bioprocessing for cellulosic ethanol conversion by cellulase–xylanase cell-surfaced yeast consortium

Chen, L., Du, J., Zhan, Y.-J., Li, J.-A., Zuo, R.-R., & Tian, S. (2018) · Preparative Biochemistry & Biotechnology · doi:10.1080/10826068.2018.1487846 · Cited by 34

Improved xylose fermentation ofKluyveromyces marxianusat elevated temperature through construction of a xylose isomerase pathway

Wang, R., Li, L., Zhang, B., Gao, X., Wang, D., & Hong, J. (2013) · Journal of Industrial Microbiology & Biotechnology · doi:10.1007/s10295-013-1282-6 · Cited by 34

Screening and evolution of a novel protist xylose isomerase from the termite Reticulitermes speratus for efficient xylose fermentation in Saccharomyces cerevisiae

Katahira, S., Muramoto, N., Moriya, S., Nagura, R., Tada, N., Yasutani, N., Ohkuma, M., Onishi, T., & Tokuhiro, K. (2017) · Biotechnology for Biofuels · doi:10.1186/s13068-017-0890-1 · Cited by 34

RNA-Seq of the xylose-fermenting yeast Scheffersomyces stipitis cultivated in glucose or xylose

Yuan, T., Ren, Y., Meng, K., Feng, Y., Yang, P., Wang, S., Shi, P., Wang, L., Xie, D., & Yao, B. (2011) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-011-3607-6 · Cited by 33

Conversion of fermentable sugars from hydrolysates of soybean and oat hulls into ethanol and xylitol by Spathaspora hagerdaliae UFMG-CM-Y303

Cortivo, P. R. D., Hickert, L. R., Rosa, C. A., & Ayub, M. A. Z. (2020) · Industrial Crops and Products · doi:10.1016/j.indcrop.2020.112218 · Cited by 32

Implementation of a transhydrogenase-like shunt to counter redox imbalance during xylose fermentation in Saccharomyces cerevisiae

Suga, H., Matsuda, F., Hasunuma, T., Ishii, J., & Kondo, A. (2012) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-012-4298-3 · Cited by 32

Gene expression cross-profiling in genetically modified industrial Saccharomyces cerevisiae strains during high-temperature ethanol production from xylose

Ismail, K. S. K., Sakamoto, T., Hatanaka, H., Hasunuma, T., & Kondo, A. (2012) · Journal of Biotechnology · doi:10.1016/j.jbiotec.2012.10.017 · Cited by 31

Hemicellulose fermentation by industrial yeast Saccharomyces cerevisiae

Narasimhan, R. A., Murthy, G. S., & Beatty, C. C. (2010) · 2010 Pittsburgh, Pennsylvania, June 20 - June 23, 2010 · doi:10.13031/2013.29920

Production of fuels and chemicals from xylose by engineered Saccharomyces cerevisiae: a review and perspective

Kwak, S., & Jin, Y. (2017) · Microbial Cell Factories · doi:10.1186/s12934-017-0694-9 · Cited by 272

Engineering of sugar transporters for improvement of xylose utilization during high-temperature alcoholic fermentation in Ogataea polymorpha yeast

Vasylyshyn, R. V., Kurylenko, O. O., Ruchała, J., Shevchuk, N., Kuliešienė, N., Khroustalyova, G., Rapoport, A. I., Daugelavičius, R., Dmytruk, K. V., & Sibirny, A. А. (2020) · Microbial Cell Factories · doi:10.1186/s12934-020-01354-9 · Cited by 42

Improved xylose fermentation by expression of a putative xylose transporter encoding gene HXT2.4 in Saccharomyces cerevisiae

Kuanyshev, N. (2013) · Illinois Digital Environment for Access to Learning and Scholarship (University of Illinois at Urbana-Champaign)

High expression of XYL2 coding for xylitol dehydrogenase is necessary for efficient xylose fermentation by engineered Saccharomyces cerevisiae

Kim, S. R., Ha, S.-J., Kong, I. I., & Jin, Y. (2012) · Metabolic Engineering · doi:10.1016/j.ymben.2012.04.001 · Cited by 86