Proteasome-mediated processing of Nrf1 is essential for coordinate induction of all proteasome subunits and p97
Open accessAbstract
Background Proteasome inhibitors are widely used in the treatment of multiple myeloma and as research tools. Additionally, diminished proteasome function may contribute to neuronal dysfunction. In response to these inhibitors, cells enhance the expression of proteasome subunits by the transcription factor Nrf1. Here, we investigate the mechanisms by which decreased proteasome function triggers production of new proteasomes via Nrf1.Results Exposure of myeloma or neuronal cells to proteasome inhibitors (bortezomib, epoxomicin, and MG132), but not to proteotoxic or ER stress, caused a 2- to 4-fold increase within 4 hr in mRNAs for all 26S subunits. In addition, p97 and its cofactors (Npl4, Ufd1, and p47), PA200, and USP14 were induced, but expression of immunoproteasome-specific subunits was suppressed. Nrf1 mediates this induction of proteasomes and p97, but only upon exposure to low concentrations of inhibitors that partially inhibit proteolysis. Surprisingly, high concentrations of these inhibitors prevent this compensatory response. Nrf1 is normally ER-bound, and its release requires its deglycosylation and ubiquitination. Normally ubiquitinated Nrf1 is rapidly degraded, but when partially inhibited, proteasomes carry out limited proteolysis and release the processed Nrf1 (lacking its N-terminal region) from the ER, which allows it to enter the nucleus and promote gene expression.Conclusions When fully active, proteasomes degrade Nrf1, but when partially inhibited, they perform limited proteolysis that generates the active form of Nrf1. This elegant mechanism allows cells to compensate for reduced proteasome function by enhancing production of 26S subunits and p97.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Nrf1-mediated transcriptional upregulation of the proteasome occurs during proteasome impairment to compensate for reduced proteasome function.
“This may be explained by the Nrf1-mediated transcriptional upregulation of the proteasome during proteasome impairment to compensate for reduced proteasome function [31].”
From PSMC5 insufficiency and P320R mutation impair proteasome function (2024) · cites this paper as [31]
Some compensation mechanisms are only observed under low concentrations of proteasome inhibitors and are absent under high levels of inhibition.
“Interestingly, some of these compensation mechanisms are only observed under low concentrations of proteasome inhibitors, and are absent under high levels of inhibition (Sha and Goldberg, 2014)”
From Altered Phosphorylation of the Proteasome Subunit Rpt6 Has Minimal Impact on Synaptic Plasticity and Learning (2021) · cites this paper as Sha and Goldberg, 2014
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
The unfolded protein response: controlling cell fate decisions under ER stress and beyond
Hetz, C. A. (2012) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm3270 · Cited by 4,118 · see citing works
Palombella, V. J., Rando, O. J., Goldberg, A. L., & Maniatis, T. (1994) · Cell · doi:10.1016/s0092-8674(94)90482-0 · Cited by 2,097 · see citing works
Self-citationRecognition and Processing of Ubiquitin-Protein Conjugates by the Proteasome
Finley, D. (2009) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.78.081507.101607 · Cited by 1,764 · see citing works
Zhao, J., Brault, J. J., Schild, A., Cao, P., Sandri, M., Schiaffino, S., Lecker, S. H., & Goldberg, A. L. (2007) · Cell Metabolism · doi:10.1016/j.cmet.2007.11.004 · Cited by 1,489 · see citing works
Self-citationZhang, D. D., & Hannink, M. (2003) · Molecular and Cellular Biology · doi:10.1128/mcb.23.22.8137-8151.2003 · Cited by 1,480 · see citing works
The Ubiquitin Proteasome System in Neurodegenerative Diseases
Ciechanover, A. J., & Brundin, P. (2003) · Neuron · doi:10.1016/s0896-6273(03)00606-8 · Cited by 984 · see citing works
Epoxomicin, a potent and selective proteasome inhibitor, exhibits in vivo antiinflammatory activity
Meng, L., Mohan, R., Kwok, B. H. B., Elofsson, M., Sin, N., & Crews, C. M. (1999) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.96.18.10403 · Cited by 926 · see citing works
Functional gamma‐secretase inhibitors reduce beta‐amyloid peptide levels in brain
Dovey, H. F., John, V., Anderson, J. P., Chen, L. Z., Andrieu, P. D. S. I., Fang, L. Y., Freedman, S. B., Folmer, B., Goldbach, E. G., Holsztynska, E. J., et al. (2001) · Journal of Neurochemistry · doi:10.1046/j.1471-4159.2001.00012.x · Cited by 870 · see citing works
Potent and selective inhibitors of the proteasome: Dipeptidyl boronic acids
Adams, J., Behnke, M., Chen, S., Cruickshank, A. A., Dick, L. R., Grenier, L., Klunder, J. M., Ma, Y.-T., Plamondon, L., & Stein, R. L. (1998) · Bioorganic & Medicinal Chemistry Letters · doi:10.1016/s0960-894x(98)00029-8 · Cited by 685 · see citing works
Radhakrishnan, S. K., Lee, C. S., Young, P., Beskow, A., Chan, J. Y., & Deshaies, R. J. (2010) · Molecular Cell · doi:10.1016/j.molcel.2010.02.029 · Cited by 526 · see citing works
Bush, K. T., Goldberg, A. L., & Nigám, S. K. (1997) · Journal of Biological Chemistry · doi:10.1074/jbc.272.14.9086 · Cited by 469 · see citing works
Self-citationStewart, D., Killeen, E., Naquin, R., Alam, S., & Alam, J. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.m209195200 · Cited by 463 · see citing works
Rapé, M., Hoppe, T., Gorr, I. H., Kalocay, M., Richly, H., & Jentsch, S. (2001) · Cell · doi:10.1016/s0092-8674(01)00595-5 · Cited by 438 · see citing works
Kisselev, A. F., Callard, A., & Goldberg, A. L. (2006) · Journal of Biological Chemistry · doi:10.1074/jbc.m509043200 · Cited by 415 · see citing works
Self-citationRPN-6 determines C. elegans longevity under proteotoxic stress conditions
Vilchez, D., Morantte, I., Liu, Z., Douglas, P. M., Merkwirth, C., Rodrigues, A. P. C., Manning, G., & Dillin, A. (2012) · Nature · doi:10.1038/nature11315 · Cited by 413 · see citing works
Increased proteasome activity in human embryonic stem cells is regulated by PSMD11
Vilchez, D., Boyer, L., Morantte, I., Lutz, M., Merkwirth, C., Joyce, D., Spencer, B., Page, L., Masliah, E., Berggren, W. T., et al. (2012) · Nature · doi:10.1038/nature11468 · Cited by 388 · see citing works
Mobilizing the proteolytic machine: cell biological roles of proteasome activators and inhibitors
Rechsteiner, M., & Hill, C. P. (2004) · Trends in Cell Biology · doi:10.1016/j.tcb.2004.11.003 · Cited by 372 · see citing works
Proteasomal Degradation Is Transcriptionally Controlled by TCF11 via an ERAD-Dependent Feedback Loop
Steffen, J., Seeger, M., Koch, A., & Krüger, E. (2010) · Molecular Cell · doi:10.1016/j.molcel.2010.09.012 · Cited by 370 · see citing works
Covalent and allosteric inhibitors of the ATPase VCP/p97 induce cancer cell death
Magnaghi, P., D’Alessio, R., Valsasina, B., Avanzi, N. R., Rizzi, S., Asa, D., Gasparri, F., Cozzi, L., Cucchi, U., Orrenius, C., et al. (2013) · Nature Chemical Biology · doi:10.1038/nchembio.1313 · Cited by 369 · see citing works
Monitoring Activity and Inhibition of 26S Proteasomes with Fluorogenic Peptide Substrates
Kisselev, A. F., & Goldberg, A. L. (2005) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/s0076-6879(05)98030-0 · Cited by 343 · see citing works
Self-citationAcetylation-Mediated Proteasomal Degradation of Core Histones during DNA Repair and Spermatogenesis
Qian, M.-X., Pang, Y., Liu, C. H., Haratake, K., Du, B.-Y., Ji, D.-Y., Wang, G.-F., Zhu, Q.-Q., Song, W., Yu, Y., et al. (2013) · Cell · doi:10.1016/j.cell.2013.04.032 · Cited by 330 · see citing works
Self-citation26S proteasomes and immunoproteasomes produce mainly N‐extended versions of an antigenic peptide
Cascio, P., Hilton, C., Kisselev, A. F., Rock, K. L., & Goldberg, A. L. (2001) · The EMBO Journal · doi:10.1093/emboj/20.10.2357 · Cited by 330 · see citing works
Self-citationMeiners, S., Heyken, D., Weller, A., Ludwig, A., Stangl, K., Kloetzel, P., & Krüger, E. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.m301032200 · Cited by 319 · see citing works
Development of proteasome inhibitors as research tools and cancer drugs
Goldberg, A. L. (2012) · The Journal of Cell Biology · doi:10.1083/jcb.201210077 · Cited by 295 · see citing works
Self-citationGenetic Evidence Linking Age-Dependent Attenuation of the 26S Proteasome with the Aging Process
Tonoki, A., Kuranaga, E., Tomioka, T., Hamazaki, J., Murata, S., Tanaka, K., & Miura, M. (2008) · Molecular and Cellular Biology · doi:10.1128/mcb.01227-08 · Cited by 288 · see citing works
Tanoka, K., & Kasahara, M. (1998) · Immunological Reviews · doi:10.1111/j.1600-065x.1998.tb01195.x · Cited by 282 · see citing works
Trimming of Ubiquitin Chains by Proteasome-associated Deubiquitinating Enzymes
Lee, M. J., Lee, B., Hanna, J. W., King, R. W., & Finley, D. J. (2010) · Molecular & Cellular Proteomics · doi:10.1074/mcp.r110.003871 · Cited by 239 · see citing works
Diverse functions with a common regulator: Ubiquitin takes command of an AAA ATPase
Ye, Y. (2006) · Journal of Structural Biology · doi:10.1016/j.jsb.2006.01.005 · Cited by 213 · see citing works
Radhakrishnan, S. K., den Besten, W., & Deshaies, R. J. (2014) · eLife · doi:10.7554/elife.01856 · Cited by 211 · see citing works
A Ubiquitin Stress Response Induces Altered Proteasome Composition
Hanna, J. W., Meides, A., Zhang, D. P., & Finley, D. J. (2007) · Cell · doi:10.1016/j.cell.2007.03.042 · Cited by 198 · see citing works
Characterization of the Proteasome Using Native Gel Electrophoresis
Elsasser, S., Schmidt, M., & Finley, D. (2005) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/s0076-6879(05)98029-4 · Cited by 173 · see citing works
Anchoori, R. K., Karanam, B., Peng, S., et al. (2013) · Cancer Cell · doi:10.1016/j.ccr.2013.11.001 · Cited by 162 · see citing works
Kobayashi, T., Tanaka, K., Inoue, K., & Kakizuka, A. (2002) · Journal of Biological Chemistry · doi:10.1074/jbc.m207783200 · Cited by 148 · see citing works
Fricke, B., Heink, S., Steffen, J., Kloetzel, P., & Krüger, E. (2007) · EMBO Reports · doi:10.1038/sj.embor.7401091 · Cited by 118 · see citing works
The ATP dependence of the degradation of short- and long-lived proteins in growing fibroblasts.
Gronostajski, R. M., Pardee, A. B., & Goldberg, A. (1985) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(19)83626-8 · Cited by 114 · see citing works
Self-citationUbiquitinated Proteins Activate the Proteasomal ATPases by Binding to Usp14 or Uch37 Homologs*
Peth, A., Kukushkin, N., Bosse, M. L., & Goldberg, A. (2013) · Journal of Biological Chemistry · doi:10.1074/jbc.m112.441907 · Cited by 114 · see citing works
Self-citationTsuchiya, Y., Morita, T., Kim, M., Iemura, S.-I., Natsume, T., Yamamoto, M. P., & Kobayashi, A. (2011) · Molecular and Cellular Biology · doi:10.1128/mcb.05663-11 · Cited by 102 · see citing works
Zhang, Y., Lucocq, J. M., Yamamoto, M. P., & Hayes, J. D. (2007) · Biochemical Journal · doi:10.1042/bj20070761 · Cited by 101 · see citing works
Growing sphere of influence: Cdc48/p97 orchestrates ubiquitin-dependent extraction from chromatin
Dantuma, N. P., & Hoppe, T. (2012) · Trends in Cell Biology · doi:10.1016/j.tcb.2012.06.003 · Cited by 101 · see citing works
Chen, J. J., Tsu, C. A., Gavin, J. M., et al. (2011) · Journal of Biological Chemistry · doi:10.1074/jbc.m111.279984 · Cited by 93 · see citing works
Kothe, M., Ye, Y., Wagner, J. S., Luca, H. E. D., Kern, E., Rapoport, T. A., & Lencer, W. I. (2005) · Journal of Biological Chemistry · doi:10.1074/jbc.m503138200 · Cited by 86 · see citing works
Modulation of γ-secretase specificity using small molecule allosteric inhibitors
Shelton, C. C., Zhu, L., Chau, D.-M., Yang, L., Wang, R., Djaballah, H., Zheng, H., & Li, Y. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0910757106 · Cited by 82 · see citing works
Getting to First Base in Proteasome Assembly
Besche, H. C., Peth, A., & Goldberg, A. L. (2009) · Cell · doi:10.1016/j.cell.2009.06.035 · Cited by 73 · see citing works
Self-citationBiswas, M., Phan, D., Watanabe, M., & Chan, J. Y. (2011) · Journal of Biological Chemistry · doi:10.1074/jbc.m111.253807 · Cited by 69 · see citing works
Bar‐Nun, S. (2006) · Springer eBooks · doi:10.1007/3-540-28007-3_5 · Cited by 68 · see citing works
Berko, D., Tabachnick‐Cherny, S., Shental-Bechor, D., Cascio, P., Mioletti, S., Levy, Y., Admon, A., Ziv, T., Tirosh, B., Goldberg, A. L., et al. (2012) · Molecular Cell · doi:10.1016/j.molcel.2012.08.029 · Cited by 64 · see citing works
Self-citationFine-tuning nucleophosmin in macrophage differentiation and activation
Guéry, L., Benikhlef, N., Gautier, T., Paul, C., Jégo, G., Dufour, E. K., Jacquel, A., Cally, R., Manoury, B., Berghe, T. V., et al. (2011) · Blood · doi:10.1182/blood-2011-03-341255 · Cited by 47 · see citing works
Zhang, Y., & Hayes, J. D. (2010) · Biochemical Journal · doi:10.1042/bj20100471 · Cited by 47 · see citing works
A Three-part Signal Governs Differential Processing of Gli1 and Gli3 Proteins by the Proteasome
Schrader, E. K., Harstad, K. G., Holmgren, R. A., & Matouschek, A. T. (2011) · Journal of Biological Chemistry · doi:10.1074/jbc.m111.274993 · Cited by 37 · see citing works
Laubach, J. P., Mitsiades, C. S., Roccaro, A. M., et al. (2009) · Leukemia & lymphoma/Leukemia and lymphoma · doi:10.1080/10428190902866732 · Cited by 36 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
SKN-1/Nrf, stress responses, and aging in Caenorhabditis elegans
Blackwell, T. K., Steinbaugh, M. J., Hourihan, J. M., Ewald, C. Y., & Isik, M. (2015) · Free Radical Biology and Medicine · doi:10.1016/j.freeradbiomed.2015.06.008 · Cited by 622 · see citing works
Regulation of proteasome assembly and activity in health and disease
Rousseau, A., & Bertolotti, A. (2018) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-018-0040-z · Cited by 510 · see citing works
Compromising the 19S proteasome complex protects cells from reduced flux through the proteasome
Tsvetkov, P., Mendillo, M. L., Zhao, J., Carette, J. E., Merrill, P. H., Cikes, D., Varadarajan, M., van Diemen, F. R., Penninger, J. M., Goldberg, A. L., et al. (2015) · eLife · doi:10.7554/elife.08467 · Cited by 83 · see citing works
Self-citationSkeletal muscle atrogenes: From rodent models to human pathologies
Taillandier, D., & Polge, C. (2019) · Biochimie · doi:10.1016/j.biochi.2019.07.014 · Cited by 66 · see citing works
Scudder, S. L., Gonzales, F. R., Howell, K. K., Stein, I. S., Dozier, L. E., Anagnostaras, S. G., Zito, K., & Patrick, G. N. (2021) · eNeuro · doi:10.1523/eneuro.0073-20.2021 · Cited by 10 · see citing works
“Interestingly, some of these compensation mechanisms are only observed under low concentrations of proteasome inhibitors, and are absent under high levels of inhibition (Sha & Goldberg, 2014), indicating specialized compensatory mechanisms for minor alterations in activity.”
BackgroundPSMC5 insufficiency and P320R mutation impair proteasome function
Yu, Z.-Q., Carmichael, J., Collins, G. A., D'Agostino, M. D., Lessard, M., Firth, H. V., Harijan, P., Fry, A. E., Dean, J., Zhang, J., et al. (2024) · Human Molecular Genetics · doi:10.1093/hmg/ddae085 · Cited by 4 · see citing works
“As proteasome defects lead to compensatory responses like activation of autophagy, the integrated stress response, and Nrf1 transcriptional programmes [31, 39, 40], it is possible that some of the consequences of these proteasome mutations may be driven by hyperactive compensatory programmes.”
Self-citation
- Authors
- Sha, Z., & Goldberg, A. L.
- Affiliations
- Harvard University (US)
- Corresponding author
- Goldberg, Alfred L.
- ORCID
- Goldberg, Alfred L.
- Venue
- Current Biology
- Publisher
- Elsevier BV
- Published
- 2014-07
- Volume
- 24
- Issue
- 14
- Pages
- 1573-1583
- ISSN
- 0960-9822 (ISSN-L)
- PMC
- PMC4108618
- OpenAlex
- W2075939049
- Cited by
- 215
- References
- 50
- Citations by year
- 2026: 10 · 2025: 11 · 2024: 13 · 2023: 13 · 2022: 20 · 2021: 15 · 2020: 23 · 2019: 25 · 2018: 18 · 2017: 20 · 2016: 27 · 2015: 15 · 2014: 5
- FWCI
- 9.11
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Current Biology (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Funders
- Leukemia and Lymphoma Society
- National Institute of General Medical Sciences (GM051923-18, R01GM051923)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Ubiquitin and proteasome pathways
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics, phytochemicals, and oxidative stress
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Endoplasmic Reticulum Stress and Disease
- Keywords
- NRF1, proteasome, VCP, proteasome inhibitors, bortezomib, epoxomicin, MG132, limited proteolysis, ubiquitination, deglycosylation, endoplasmic reticulum, compensatory response, multiple myeloma, neurons, immunoproteasome, Npl4, Ufd1, p47phox, PA200, USP14
- MeSH terms
- Bortezomib, Boronic Acids, Cell Line, Endoplasmic Reticulum, Humans, Leupeptins, Nuclear Proteins, Oligopeptides, Pyrazines, RNA Interference, RNA, Small Interfering, Ubiquitin Thiolesterase, Proteasome Endopeptidase Complex, Nuclear Respiratory Factor 1, Ubiquitination, Unfolded Protein Response, HEK293 Cells, Proteolysis, Proteasome Inhibitors
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review