The DOI matches its Crossref record; 61 of the 61 references it cites were found in a registry or an index.
Single-Cell Profiling Reveals Sex, Lineage, and Regional Diversity in the Mouse Kidney
Open accessOverview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
STAR: ultrafast universal RNA-seq aligner
Dobin, A., Davis, C. A., Schlesinger, F., Drenkow, J., Zaleski, C., Jha, S., Batut, P., Chaisson, M., & Gingeras, T. R. (2013) · Bioinformatics · doi:10.1093/bioinformatics/bts635 · Cited by 51,709
Integrating single-cell transcriptomic data across different conditions, technologies, and species
Butler, A., Hoffman, P., Smibert, P., Papalexi, E., & Satija, R. (2018) · Nature Biotechnology · doi:10.1038/nbt.4096 · Cited by 13,174
Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets.
Macosko, E. Z., Basu, A., Satija, R., Nemesh, J., Shekhar, K., Goldman, M., Tirosh, I., Bialas, A. R., Kamitaki, N., Martersteck, E. M., et al. (2015) · Cell · doi:10.1016/j.cell.2015.05.002 · Cited by 7,110
A robust and high-throughput Cre reporting and characterization system for the whole mouse brain
Madisen, L., Zwingman, T. A., Sunkin, S. M., Oh, S. W., Zariwala, H. A., Gu, H., Ng, L. L., Palmiter, R. D., Hawrylycz, M. J., Jones, A. R., et al. (2010) · Nature Neuroscience · doi:10.1038/nn.2467 · Cited by 6,907
Large-scale gene function analysis with the PANTHER classification system
Mi, H., Muruganujan, A., Casagrande, J. T., & Thomas, P. D. (2013) · Nature Protocols · doi:10.1038/nprot.2013.092 · Cited by 2,466
Prolactin: structure, function, and regulation of secretion
Freeman, M. E., Kanyicska, B., Lerant, A., & Nagy, G. (2000) · Physiological Reviews · doi:10.1152/physrev.2000.80.4.1523 · Cited by 2,457
Mapping the Mouse Cell Atlas by Microwell-Seq
Han, X., Wang, R., Zhou, Y., Fei, L., Sun, H., Lai, S., Saadatpour, A., Zhou, Z., Chen, H., Ye, F., et al. (2018) · Cell · doi:10.1016/j.cell.2018.02.001 · Cited by 1,597
FUNDAMENTALS OF PLANARIAN REGENERATION
Reddien, P. W., & Alvarado, A. S. (2004) · Annual Review of Cell and Developmental Biology · doi:10.1146/annurev.cellbio.20.010403.095114 · Cited by 1,101
Massively parallel single-nucleus RNA-seq with DroNc-seq
Habib, N., Avraham-Davidi, I., Basu, A., Burks, T., Shekhar, K., Hofree, M., Choudhury, S. R., Aguet, F., Gelfand, E., Ardlie, K., et al. (2017) · Nature Methods · doi:10.1038/nmeth.4407 · Cited by 1,069
Single-cell transcriptomics of the mouse kidney reveals potential cellular targets of kidney disease
Park, J., Shrestha, R., Qiu, C., Kondo, A., Huang, S., Werth, M., Li, M., Barasch, J., & Suszták, K. (2018) · Science · doi:10.1126/science.aar2131 · Cited by 1,065
Kobayashi, A., Valerius, M. T., Mugford, J. W., Carroll, T. J., Self, M., Oliver, G., & McMahon, A. P. (2008) · Cell Stem Cell · doi:10.1016/j.stem.2008.05.020 · Cited by 973
Self-citationThe global burden of kidney disease and the sustainable development goals
Luyckx, V. A., Tonelli, M., & Stanifer, J. W. (2018) · Bulletin of the World Health Organization · doi:10.2471/blt.17.206441 · Cited by 926
Taguchi, A., Kaku, Y., Ohmori, T., Sharmin, S., Ogawa, M., Sasaki, H., & Nishinakamura, R. (2014) · Cell Stem Cell · doi:10.1016/j.stem.2013.11.010 · Cited by 865
Glomerular number and size in autopsy kidneys: The relationship to birth weight
Hughson, M., Farris, A. B., Douglas-Denton, R., Hoy, W. E., & Bertram, J. F. (2003) · Kidney International · doi:10.1046/j.1523-1755.2003.00018.x · Cited by 760
Wu, H., Kirita, Y., Donnelly, E. L., & Humphreys, B. D. (2019) · Journal of the American Society of Nephrology · doi:10.1681/asn.2018090912 · Cited by 752
Johnson, M. H. (1996) · Europe PMC (PubMed Central) · Cited by 651
A lineage-resolved molecular atlas of C. elegans embryogenesis at single-cell resolution
Packer, J. S., Zhu, Q., Huynh, C., Sivaramakrishnan, P., Preston, E., Dueck, H., Stefanik, D., Tan, K., Trapnell, C., Kim, J., et al. (2019) · Science · doi:10.1126/science.aax1971 · Cited by 543
Self-citationDeep Sequencing in Microdissected Renal Tubules Identifies Nephron Segment–Specific Transcriptomes
Lee, J. W., Chou, C.-L., & Knepper, M. A. (2015) · Journal of the American Society of Nephrology · doi:10.1681/asn.2014111067 · Cited by 540
Human nephron number: implications for health and disease
Bertram, J. F., Douglas-Denton, R. N., Diouf, B., Hughson, M. D., & Hoy, W. E. (2011) · Pediatric Nephrology · doi:10.1007/s00467-011-1843-8 · Cited by 505
Higher-Order Kidney Organogenesis from Pluripotent Stem Cells
Taguchi, A., & Nishinakamura, R. (2017) · Cell Stem Cell · doi:10.1016/j.stem.2017.10.011 · Cited by 431
Testosterone Is Responsible for Enhanced Susceptibility of Males to Ischemic Renal Injury
Park, K. M., Kim, J. I., Ahn, Y., Bonventre, A. J., & Bonventre, J. V. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m407629200 · Cited by 351
Self-citationBielesz, B., Sirin, Y., Si, H., Niranjan, T., Gruenwald, A., Ahn, S., Kato, H., Pullman, J., Gessler, M., Haase, V. H., et al. (2010) · Journal of Clinical Investigation · doi:10.1172/jci43025 · Cited by 345
Adam, M., Potter, A. S., & Potter, S. S. (2017) · Development · doi:10.1242/dev.151142 · Cited by 343
Proximal Tubule Function and Response to Acidosis
Curthoys, N. P., & Moe, O. W. (2014) · Clinical Journal of the American Society of Nephrology · doi:10.2215/cjn.10391012 · Cited by 337
Development of the Mammalian Kidney
McMahon, A. P. (2016) · Current Topics in Developmental Biology · doi:10.1016/bs.ctdb.2015.10.010 · Cited by 318
Self-citationCollecting Duct Principal Cell Transport Processes and Their Regulation
Pearce, D., Soundararajan, R., Trimpert, C., Kashlan, O. B., Deen, P. M. T., & Kohan, D. E. (2015) · Clinical Journal of the American Society of Nephrology · doi:10.2215/cjn.05760513 · Cited by 303
Georgas, K., Rumballe, B., Valerius, M. T., Chiu, H. S., Thiagarajan, R. D., Lesieur, E., Aronow, B. J., Brunskill, E. W., Combes, A. N., Tang, D., et al. (2009) · Developmental Biology · doi:10.1016/j.ydbio.2009.05.578 · Cited by 275
Self-citationHox11 paralogous genes are essential for metanephric kidney induction
Wellik, D. M., Hawkes, P. J., & Capecchi, M. R. (2002) · Genes & Development · doi:10.1101/gad.993302 · Cited by 270
Transcriptomes of major renal collecting duct cell types in mouse identified by single-cell RNA-seq
Chen, L., Lee, J. W., Chou, C.-L., Nair, A. V., Battistone, M. A., Păunescu, T. G., Merkulova, M., Breton, S., Verlander, J. W., Wall, S. M., et al. (2017) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1710964114 · Cited by 267
Collecting Duct Intercalated Cell Function and Regulation
Roy, A., Al-bataineh, M. M., & Pastor-Soler, N. M. (2015) · Clinical Journal of the American Society of Nephrology · doi:10.2215/cjn.08880914 · Cited by 252
GUDMAP: The Genitourinary Developmental Molecular Anatomy Project
McMahon, A. P., Aronow, B. J., Davidson, D. R., Davies, J. A., Gaido, K. W., Grimmond, S., Lessard, J. L., Little, M. H., Potter, S. S., Wilder, E. L., et al. (2008) · Journal of the American Society of Nephrology · doi:10.1681/asn.2007101078 · Cited by 250
Self-citationThe GUDMAP database – an online resource for genitourinary research
Harding, S. D., Armit, C., Armstrong, J., Brennan, J., Cheng, Y., Haggarty, B., Houghton, D., Lloyd-MacGilp, S., Pi, X., Roochun, Y., et al. (2011) · Development · doi:10.1242/dev.063594 · Cited by 250
Self-citationGender differences in kidney function
Sabolić, I., Asif, A. R., Budach, W. E., Wanke, C., Bahn, A., & Burckhardt, G. (2007) · Pflügers Archiv - European Journal of Physiology · doi:10.1007/s00424-007-0308-1 · Cited by 226
Lindström, N. O., De Sena Brandine, G., Tran, T., Ransick, A., Suh, G., Guo, J., Kim, A. D., Parvez, R. K., Ruffins, S. W., Rutledge, E. A., et al. (2018) · Developmental Cell · doi:10.1016/j.devcel.2018.05.010 · Cited by 212
Self-citationCombes, A. N., Phipson, B., Lawlor, K. T., Dorison, A., Patrick, R., Zappia, L., Harvey, R. P., Oshlack, A., & Little, M. H. (2019) · Development · doi:10.1242/dev.178673 · Cited by 172
A Single-Cell Transcriptome Atlas of the Mouse Glomerulus
Karaiskos, N., Rahmatollahi, M., Boltengagen, A., Liu, H., Hoehne, M., Rinschen, M., Schermer, B., Benzing, T., Rajewsky, N., Kocks, C., et al. (2018) · Journal of the American Society of Nephrology · doi:10.1681/asn.2018030238 · Cited by 166
Ammonia Transporters and Their Role in Acid-Base Balance
Weiner, I. D., & Verlander, J. W. (2017) · Physiological Reviews · doi:10.1152/physrev.00011.2016 · Cited by 161
Improved renal ischemia tolerance in females influences kidney transplantation outcomes
Aufhauser, D. D., Wang, Z., Murken, D. R., Bhatti, T. R., Wang, Y., Ge, G., Redfield, R. R., Abt, P. L., Wang, L., Svoronos, N., et al. (2016) · Journal of Clinical Investigation · doi:10.1172/jci84712 · Cited by 155
Rinn, J. L., Rozowsky, J. S., Laurenzi, I. J., Petersen, P. H., Zou, K., Zhong, W., Gerstein, M., & Snyder, M. P. (2004) · Developmental Cell · doi:10.1016/j.devcel.2004.05.005 · Cited by 152
Role of NH3and NH4+transporters in renal acid-base transport
Weiner, I. D., & Verlander, J. W. (2010) · American Journal of Physiology-Renal Physiology · doi:10.1152/ajprenal.00554.2010 · Cited by 148
Conserved and Divergent Molecular and Anatomic Features of Human and Mouse Nephron Patterning
Lindström, N. O., Tran, T., Guo, J., Rutledge, E. A., Parvez, R. K., Thornton, M. E., Grubbs, B. H., McMahon, J. A., & McMahon, A. P. (2018) · Journal of the American Society of Nephrology · doi:10.1681/asn.2017091036 · Cited by 148
Self-citationSerious Illness Conversations in ESRD
Mandel, E. I., Bernacki, R., & Block, S. D. (2016) · Clinical Journal of the American Society of Nephrology · doi:10.2215/cjn.05760516 · Cited by 147
Sex differences in acute kidney injury requiring dialysis
Neugarten, J., Golestaneh, L., & Kolhe, N. V. (2018) · BMC Nephrology · doi:10.1186/s12882-018-0937-y · Cited by 144
Reassessing the Role of Hox Genes during Vertebrate Development and Evolution
Mallo, M. (2017) · Trends in Genetics · doi:10.1016/j.tig.2017.11.007 · Cited by 143
Piekorz, R. P., Gingras, S., Hoffmeyer, A., Ihle, J. N., & Weinstein, Y. (2004) · Molecular Endocrinology · doi:10.1210/me.2004-0302 · Cited by 139
O’Brien, L. L., Guo, Q., Lee, Y., Tran, T., Bénazet, J.-D., Whitney, P. H., Valouev, A., & McMahon, A. P. (2016) · Development · doi:10.1242/dev.127175 · Cited by 135
Self-citationTranscription factor TFCP2L1 patterns cells in the mouse kidney collecting ducts
Werth, M., Schmidt-Ott, K. M., Leete, T., Qiu, A., Hinze, C., Viltard, M., Paragas, N., Shawber, C. J., Yu, W., Lee, P., et al. (2017) · eLife · doi:10.7554/elife.24265 · Cited by 121
Jeong, H., Jeon, U. S., Koo, B., Kim, W., Im, S., Shin, J., Cho, Y., Kim, J., & Kong, Y. (2009) · Journal of Clinical Investigation · doi:10.1172/jci38416 · Cited by 111
Self-citationThe Role of Osteopontin in the Development of Albuminuria
Lorenzen, J. M., Shah, R., Biser, A., Staicu, S. A., Niranjan, T. G., Garcia, A. M., Gruenwald, A., Thomas, D. B., Shatat, I. F., Supe, K., et al. (2008) · Journal of the American Society of Nephrology · doi:10.1681/asn.2007040486 · Cited by 91
Gender differences control the susceptibility to ER stress-induced acute kidney injury
Hodeify, R. F., Megyesi, J. K., Tarcsafalvi, A., Mustafa, H. I., Seng, N. S. H. L., & Price, P. M. (2013) · American Journal of Physiology-Renal Physiology · doi:10.1152/ajprenal.00590.2012 · Cited by 86
Si, H., Banga, R. S., Kapitsinou, P. P., Ramaiah, M., Lawrence, J., Kambhampati, G., Gruenwald, A., Böttinger, E. P., Glicklich, D., TELLIS, V. A., et al. (2009) · PLoS ONE · doi:10.1371/journal.pone.0004802 · Cited by 75
Oxburgh, L., Carroll, T. J., Cleaver, O. B., Gossett, D. R., Hoshizaki, D. K., Hubbell, J. A., Humphreys, B. D., Jain, S., Jensen, J., Kaplan, D. L., et al. (2017) · Journal of the American Society of Nephrology · doi:10.1681/asn.2016101077 · Cited by 68
Self-citationNielsen, S., Kwon, T.-H., Fenton, R. A., & Prætorious, J. (2012) · Elsevier eBooks · doi:10.1016/b978-1-4160-6193-9.10002-8 · Cited by 67
A transgenic mouse that reveals cell shape and arrangement during ureteric bud branching
Chi, X., Hadjantonakis, A., Wu, Z., Hyink, D. P., & Costantini, F. D. (2008) · genesis · doi:10.1002/dvg.20452 · Cited by 64
Prolactin, a natriuretic hormone, interacting with the renal dopamine system
Ibarra, F. R., Crambert, S., Eklöf, A., Lundquist, A., Hansell, P., & Holtbäck, U. (2005) · Kidney International · doi:10.1111/j.1523-1755.2005.00586.x · Cited by 55
Carga, acceso y disparidades en enfermedad renal
Crews, D. C., Bello, A. K., & Saadi, G. E. (2019) · Revista Colombiana de Nefrología · doi:10.22265/acnef.6.1.341 · Cited by 42
Role of corin in the regulation of blood pressure
Li, H., Zhang, Y., & Wu, Q. (2016) · Current Opinion in Nephrology & Hypertension · doi:10.1097/mnh.0000000000000297 · Cited by 39
Clinicopathological assessment of the nephron number
Tsuboi, N., Kanzaki, G., Koike, K., Kawamura, T., Ogura, M., & Yokoo, T. (2014) · Clinical Kidney Journal · doi:10.1093/ckj/sfu018 · Cited by 38
The Renal Circulations and Glomerular Ultrafiltration
Munger, K. A., Kost, C. K., Brenner, B. M., & Maddox, D. A. (2012) · Elsevier eBooks · doi:10.1016/b978-1-4160-6193-9.10003-x · Cited by 36
Combes, A. N., Phipson, B., Lawlor, K. T., Dorison, A., Patrick, R., Zappia, L., Harvey, R. P., Oshlack, A., & Little, M. H. (2019) · Development · doi:10.1242/dev.182162 · Cited by 26
Disruption of Hox9,10,11 function results in cellular level lineage infidelity in the kidney
Drake, K. A., Adam, M., Mahoney, R., & Potter, S. S. (2018) · Scientific Reports · doi:10.1038/s41598-018-24782-5 · Cited by 21
Cited by
Giotto: a toolbox for integrative analysis and visualization of spatial expression data
Dries, R., Zhu, Q., Dong, R., Eng, C.-H. L., Li, H., Liu, K., Fu, Y., Zhao, T., Sarkar, A., Bao, F., et al. (2021) · Genome Biology · doi:10.1186/s13059-021-02286-2 · Cited by 917
Self-citationGeneration of a p16 Reporter Mouse and Its Use to Characterize and Target p16high Cells In Vivo
Omori, S., Wang, T.-W., Johmura, Y., Kanai, T., Nakano, Y., Kido, T., Susaki, E. A., Nakajima, T., Shichino, S., Ueha, S., et al. (2020) · Cell Metabolism · doi:10.1016/j.cmet.2020.09.006 · Cited by 194
Effects of parathyroid hormone on renal tubular calcium and phosphate handling
Alexander, R. T., & Dimke, H. (2023) · Acta Physiologica · doi:10.1111/apha.13959 · Cited by 62
Liu, G., Li, Y., Zhang, T., Li, M., Li, S., He, Q., Liu, S., Xu, M., Xiao, T., Shao, Z., et al. (2021) · Genomics, Proteomics & Bioinformatics · doi:10.1016/j.gpb.2021.07.004 · Cited by 30
Biofluid GPNMB/osteoactivin as a potential biomarker of ageing: A cross-sectional study
Liu, Y.-Y., Pang, J., Zhang, C., Zeng, L.-T., Wang, Y., Wang, S.-B., Fan, G.-Q., Zhang, L.-Q., Shen, T., Li, X.-F., et al. (2024) · Heliyon · doi:10.1016/j.heliyon.2024.e36574 · Cited by 6
Metadata
- Authors
- Ransick, A., Lindström, N. O., Liu, J., Zhu, Q., Guo, J.-J., Alvarado, G. F., Kim, A. D., Black, H. G., Kim, J., & McMahon, A. P.
- Venue
- Developmental Cell
- Publisher
- Elsevier BV
- Published
- 2019-11
- Volume
- 51
- Issue
- 3
- Pages
- 399-413.e7
- ISSN
- 1534-5807 (ISSN-L)
- OpenAlex
- W2983863383
- Cited by
- 429
- References
- 61
- FWCI
- 12.10
- Type
- journal article
- Language
- en
- Open access
- bronze
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.