The DOI matches its Crossref record; 9 of the 9 references it cites were found in a registry or an index.
Accurate sex identification of ancient human remains using DNA shotgun sequencing
Overview
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Biological sex, as determined by the karyotype of sex chromosomes in species such as humans, is straightforward to estimate even with only a few thousand random sequences from a human individual.
“Biological sex, as determined by the karyotype of sex chromosomes in species such as humans (XY in males, XX in females and exceptional karyotypes such as XXY, XYY and others), is straightforward to estimate even with only a few thousand random sequences from a human individual 198 .”
From Ancient DNA analysis (2021) · cites this paper as [198]
Citations
Cites
Fast and accurate short read alignment with Burrows-Wheeler transform
Li, H., & Durbin, R. (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp324 · Cited by 58,607
An integrated map of genetic variation from 1,092 human genomes
The 1000 Genomes Project Consortium (2012) · Nature · doi:10.1038/nature11632 · Cited by 7,711
Genetic history of an archaic hominin group from Denisova Cave in Siberia
Reich, D., Green, R. E., Kircher, M., Krause, J., Patterson, N., Durand, E. Y., Viola, B., Briggs, A. W., Stenzel, U., Johnson, P. L. F., et al. (2010) · Nature · doi:10.1038/nature09710 · Cited by 1,991
A high-coverage genome sequence from an archaic denisovan individual
Meyer, M., Kircher, M., Gansauge, M.-T., Li, H., Racimo, F., Mallick, S., Schraiber, J. G., Jay, F., Prüfer, K., de Filippo, C., et al. (2012) · Science · doi:10.1126/science.1224344 · Cited by 1,967
Ancient human genome sequence of an extinct Palaeo-Eskimo
Rasmussen, M., Li, Y., Lindgreen, S., Pedersen, J. S., Albrechtsen, A., Moltke, I., Metspalu, M., Metspalu, E., Kivisild, T., Gupta, R., et al. (2010) · Nature · doi:10.1038/nature08835 · Cited by 849
An aboriginal Australian genome reveals separate human dispersals into Asia
Rasmussen, M., Guo, X., Wang, Y., Lohmueller, K. E., Rasmussen, S., Albrechtsen, A., Skotte, L., Lindgreen, S., Metspalu, M., Jombart, T., et al. (2011) · Science · doi:10.1126/science.1211177 · Cited by 787
Sequencing and analysis of Neanderthal genomic DNA
Noonan, J. P., Coop, G., Kudaravalli, S., Smith, D., Krause, J., Alessi, J., Chen, F., Platt, D., Pääbo, S., Pritchard, J. K., et al. (2006) · Science · doi:10.1126/science.1131412 · Cited by 629
Temporal patterns of nucleotide misincorporations and DNA fragmentation in ancient DNA
Sawyer, S., Krause, J., Guschanski, K., Savolainen, V., & Pääbo, S. (2012) · PLoS ONE · doi:10.1371/journal.pone.0034131 · Cited by 489
New insights into the Tyrolean Iceman's origin and phenotype as inferred by whole-genome sequencing
Keller, A., Graefen, A., Ball, M., Matzas, M., Boisguerin, V., Maixner, F., Leidinger, P., Backes, C., Khairat, R., Forster, M., et al. (2012) · Nature Communications · doi:10.1038/ncomms1701 · Cited by 437
Flagged first, then by citations
Research works printed but not linked: 47
- Adler, 2010, Sexual dimorphism in deciduous crown traits of a European derived Australian sample, Forensic Science International, 199, 29, 10.1016/j.forsciint.2010.02.025 · DOI
- Bianchi, 2012, Genome-wide fetal aneuploidy detection by maternal plasma DNA sequencing, Obstretics & Gynecology, 119, 890, 10.1097/AOG.0b013e31824fb482 · DOI
- Black, 1978, Sexual dimorphism in tooth-crown diameters of deciduous teeth, American Journal of Physical Anthropology, 48, 77, 10.1002/ajpa.1330480111 · DOI
- Black, 1978, A new method for assessing the sex of fragmentary skeletal remains in femoral shaft circumference, American Journal of Physical Anthropology, 48, 227, 10.1002/ajpa.1330480217 · DOI
- Briggs, 2007, Patterns of damage in genomic DNA sequences from a Neandertal, Proceedings of the National Academy of Sciences, 104, 14616, 10.1073/pnas.0704665104 · DOI · Paper page
- Brown, 2007, Evaluation of Purkait's triangle method for determining sexual dimorphism, Journal of Forensic Sciences, 52, 553, 10.1111/j.1556-4029.2007.00423.x · DOI
- Cardoso, 2008, Sample-specific (universal) metric approaches for determining the sex of immature human skeletal remains using permanent tooth dimensions, Journal of Archaeological Science, 35, 158, 10.1016/j.jas.2007.02.013 · DOI
- Cardoso, 2008, Two arch criteria of the ilium for sex determination of immature skeletal remains: a test of their accuracy and an assessment of intra- and inter-observer error, Forensic Science International, 178, 24, 10.1016/j.forsciint.2008.01.012 · DOI
- Daskalaki, 2011, Further developments in molecular sex assignment: a blind test of 18th and 19th century human skeletons, Journal of Archaeological Science, 38, 1326, 10.1016/j.jas.2011.01.009 · DOI
- Ditch, 1972, Multivariate dental sexing technique, American Journal of Physical Anthropology, 37, 61, 10.1002/ajpa.1330370108 · DOI
- Faerman, 1995, Sex identification of archaeological human remains based on amplification of the X and Y amelogenin alleles, Gene, 167, 327, 10.1016/0378-1119(95)00697-4 · DOI
- Galdames, 2008, Blind test of mandibular morphology with sex indicator in subadult mandibles, International Journal of Morphology, 26, 845
- Gejvall, 1974, Description of the human skeleton from the graves and some associated animal bones, vol. 6, 141
- Gibbon, 2009, Novel methods of molecular sex identification from skeletal tissue using the amelogenin gene, Forensic Science International-genetics, 3, 74, 10.1016/j.fsigen.2008.10.007 · DOI
- Götherström, 1997, Osteology, DNA and sex identification: morphological and molecular sex identifications of five neolithic individuals from Ajvide, Gotland, International Journal of Osteoarchaeology, 7, 71, 10.1002/(SICI)1099-1212(199701)7:1<71::AID-OA321>3.0.CO;2-K · DOI
- Green, 2006, Analysis of one million base pairs of Neanderthal DNA, Nature, 444, 330, 10.1038/nature05336 · DOI
- Green, 2010, A draft sequence of the Neandertal genome, Science, 328, 710, 10.1126/science.1188021 · DOI · Paper page
- Helgason, 2007, A statistical approach to identify ancient template DNA, Journal of Molecular Evolution, 65, 92, 10.1007/s00239-006-0259-8 · DOI
- Hummel, 1991, Y-Chromosome-Specific DNA amplified in ancient human bone, Naturwissenschaften, 78, 266, 10.1007/BF01134353 · DOI
- Hunt, 1990, Sex determination in the subadult ilia e an indirect test of weavers nonmetric sexing method, Journal of Forensic Sciences, 35, 881, 10.1520/JFS12900J · DOI
- Janzon, 1974, Gotlands Mellanneolitiska Gravar, vol. 6
- Kim, 2013, A real-time PCR-based amelogenin Y allele dropout assessment model in gender typing of degraded DNA samples, International Journal of Legal Medicine, 127, 55, 10.1007/s00414-011-0663-5 · DOI
- Kjellström, 2004, Evaluations of sex assessment using weighted traits on incomplete skeletal remains, International Journal of Osteoarchaeology, 14, 360, 10.1002/oa.720 · DOI
- Krause, 2010, A complete mtDNA genome of an early modern human from Kostenki, Russia, Current Biology, CB, 20, 231, 10.1016/j.cub.2009.11.068 · DOI · Paper page
- Lassen, 2000, Molecular sex identification of stillborn and neonate individuals (“Traufkinder”) from the burial site Aegerten, Anthropologischer Anzeiger, 58, 1, 10.1127/anthranz/58/2000/1 · DOI
- Liang, 2013, Non-invasive prenatal testing of fetal whole chromosome aneuploidy by massively parallel sequencing, Prenatal Diagnosis, 10.1002/pd.4033 · DOI
- Loth, 2001, Sexually dimorphic mandibular morphology in the first few years of life, American Journal of Physical Anthropology, 115, 179, 10.1002/ajpa.1067 · DOI
- Malmström, 2005, Extensive human DNA contamination in extracts from ancient dog bones and teeth, Molecular Biology and Evolution, 22, 2040, 10.1093/molbev/msi195 · DOI
- Molleson, 1998, Some sexually dimorphic features of the human juvenile skull and their value in sex determination in immature skeletal remains, Journal of Archaeological Science, 25, 719, 10.1006/jasc.1997.0215 · DOI
- Morrill, 2008, Sequence length Polymorphisms within primate amelogenin and amelogenin-like genes: usefulness in sex determination, American Journal of Primatology, 70, 976, 10.1002/ajp.20590 · DOI
- Murail, 1999, A new approach to sexual diagnosis in past populations. Practical adjustments from Van Vark's procedure, International Journal of Osteoarchaeology, 9, 39, 10.1002/(SICI)1099-1212(199901/02)9:1<39::AID-OA458>3.0.CO;2-V · DOI
- Poinar, 2006, Metagenomics to paleogenomics: large-scale sequencing of mammoth DNA, Science, 311, 392, 10.1126/science.1123360 · DOI
- Quincey, 2013, Difficulties of sex determination from forensic bone degraded DNA: a comparison of three methods, Journal of Forensic Science Society
- Rosing, 1983, Sexing immature human skeletons, Journal of Human Evolution, 12, 149, 10.1016/S0047-2484(83)80020-7 · DOI
- Sánchez-Quinto, 2012, Genomic affinities of two 7,000-Year-Old Iberian hunter–gatherers, Current Biology, 22, 1494, 10.1016/j.cub.2012.06.005 · DOI · Paper page
- Scheuer, 2002, Brief communication: a blind test of mandibular morphology for sexing mandibles in the first few years of life, American Journal of Physical Anthropology, 119, 189, 10.1002/ajpa.10098 · DOI
- Schutkowski, 1993, Sex determination of infant and juvenile skeletons .1. Morphognostic Features, American Journal of Physical Anthropology, 90, 199, 10.1002/ajpa.1330900206 · DOI
- Skoglund, 2012, Origins and genetic legacy of Neolithic farmers and hunter-gatherers in Europe, Science, 336, 466, 10.1126/science.1216304 · DOI · Paper page
- Stone, 1996, Sex determination of ancient human skeletons using DNA, American Journal of Physical Anthropology, 99, 231, 10.1002/(SICI)1096-8644(199602)99:2<231::AID-AJPA1>3.0.CO;2-1 · DOI
- Sullivan, 1993, A rapid and quantitative DNA sex test e fluorescence-based Pcr analysis of X–Y homologous gene amelogenin, Biotechniques, 15, 636
- Sutter, 2003, Nonmetric subadult skeletal sexing traits: I. A blind test of the accuracy of eight previously proposed methods using prehistoric known-sex mummies from Northern Chile, Journal of Forensic Sciences, 48, 927, 10.1520/JFS2002302 · DOI
- Tschentscher, 2008, Amelogenin sex determination by pyrosequencing of short PCR products, International Journal of Legal Medicine, 122, 333, 10.1007/s00414-008-0228-4 · DOI
- Veroni, 2010, Brief communication: sexual dimorphism of the juvenile basicranium, American Journal of Physical Anthropology, 141, 147, 10.1002/ajpa.21156 · DOI
- Vlak, 2008, Greater sciatic notch as a sex indicator in juveniles, American Journal of Physical Anthropology, 137, 309, 10.1002/ajpa.20875 · DOI
- Weaver, 1980, Sex differences in the ilia of a known sex and age sample of fetal and infant skeletons, American Journal of Physical Anthropology, 52, 191, 10.1002/ajpa.1330520205 · DOI
- Wilson, 2008, Morphometric criteria for sexing juvenile human skeletons using the ilium, Journal of Forensic Sciences, 53, 269, 10.1111/j.1556-4029.2008.00656.x · DOI
- Wilson, 2010, On the reliability of a geometric morphometric approach to sex determination: a blind test of six criteria of the juvenile ilium, Forensic Science International
Cited by
Sorted by citations
Massive migration from the steppe was a source for Indo-European languages in Europe
Haak, W., Lazaridis, I., Patterson, N., Rohland, N., Mallick, S., Llamas, B., Brandt, G., Nordenfelt, S., Harney, E., Stewardson, K., et al. (2015) · Nature · doi:10.1038/nature14317 · Cited by 1,940
Genome-wide patterns of selection in 230 ancient Eurasians
Mathieson, I., Lazaridis, I., Rohland, N., Mallick, S., Patterson, N., Roodenberg, S. A., Harney, E., Stewardson, K., Fernandes, D., Novak, M., et al. (2015) · Nature · doi:10.1038/nature16152 · Cited by 1,515
Ancient human genomes suggest three ancestral populations for present-day Europeans
Lazaridis, I., Patterson, N., Mittnik, A., Renaud, G., Mallick, S., Kirsanow, K., Sudmant, P. H., Schraiber, J. G., Castellano, S., Lipson, M., et al. (2014) · Nature · doi:10.1038/nature13673 · Cited by 1,357
Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans
Raghavan, M., Skoglund, P., Graf, K. E., Metspalu, M., Albrechtsen, A., Moltke, I., Rasmussen, S., Stafford Jr, T. W., Orlando, L., Metspalu, E., et al. (2014) · Nature · doi:10.1038/nature12736 · Cited by 963
Self-citationGenome flux and stasis in a five millennium transect of European prehistory
Gamba, C., Jones, E. R., Teasdale, M. D., McLaughlin, R. L., Gonzalez-Fortes, G., Mattiangeli, V., Domboróczki, L., Kővári, I., Pap, I., Anders, A., et al. (2014) · Nature Communications · doi:10.1038/ncomms6257 · Cited by 667
Genomic evidence for the Pleistocene and recent population history of Native Americans
Raghavan, M., Steinrücken, M., Harris, K., Schiffels, S., Rasmussen, S., DeGiorgio, M., Albrechtsen, A., Valdiosera, C., Ávila-Arcos, M. C., Malaspinas, A.-S., et al. (2015) · Science · doi:10.1126/science.aab3884 · Cited by 540
Self-citationSouthern African ancient genomes estimate modern human divergence to 350,000 to 260,000 years ago
Schlebusch, C. M., Malmström, H., Günther, T., Sjödin, P., Coutinho, A., Edlund, H., Munters, A. R., Vicente, M., Steyn, M., Soodyall, H., et al. (2017) · Science · doi:10.1126/science.aao6266 · Cited by 519
Self-citationUpper Palaeolithic genomes reveal deep roots of modern Eurasians
Jones, E. R., Gonzalez-Fortes, G., Connell, S., Siska, V., Eriksson, A., Martiniano, R., McLaughlin, R. L., Gallego Llorente, M., Cassidy, L. M., Gamba, C., et al. (2015) · Nature Communications · doi:10.1038/ncomms9912 · Cited by 417
Genomic insights into the peopling of the Southwest Pacific
Skoglund, P., Posth, C., Sirak, K., Spriggs, M., Valentin, F., Bedford, S., Clark, G. R., Reepmeyer, C., Petchey, F., Fernandes, D., et al. (2016) · Nature · doi:10.1038/nature19844 · Cited by 414
Self-citationOrlando, L., Allaby, R., Skoglund, P., Der Sarkissian, C., Stockhammer, P. W., Ávila-Arcos, M. C., Fu, Q., Krause, J., Willerslev, E., Stone, A. C., et al. (2021) · Nature Reviews Methods Primers · doi:10.1038/s43586-020-00011-0 · Cited by 411
Self-citationOrigins and genetic legacy of prehistoric dogs
Bergström, A., Frantz, L., Schmidt, R., Ersmark, E., Lebrasseur, O., Girdland-Flink, L., Lin, A. T., Storå, J., Sjögren, K.-G., Anthony, D., et al. (2020) · Science · doi:10.1126/science.aba9572 · Cited by 297
Archaeogenomic evidence reveals prehistoric matrilineal dynasty
Kennett, D. J., Plog, S., George, R. J., Culleton, B. J., Watson, A. S., Skoglund, P., Rohland, N., Mallick, S., Stewardson, K., Kistler, L., et al. (2017) · Nature Communications · doi:10.1038/ncomms14115 · Cited by 301
Self-citationVelsko, I. M., Fellows Yates, J. A., Aron, F., Hagan, R. W., Frantz, L. A. F., Loe, L., Martinez, J. B. R., Chaves, E., Gosden, C., Larson, G., et al. (2019) · Microbiome · doi:10.1186/s40168-019-0717-3 · Cited by 170
Maixner, F., Sarhan, M. S., Huang, K. D., Tett, A., Schoenafinger, A., Zingale, S., Blanco-Míguez, A., Manghi, P., Cemper-Kiesslich, J., Rosendahl, W., et al. (2021) · Current Biology · doi:10.1016/j.cub.2021.09.031 · Cited by 62
Genetic Ancestry of Rapanui before and after European Contact
Fehren-Schmitz, L., Jarman, C. L., Harkins, K. M., Kayser, M., Popp, B. N., & Skoglund, P. (2017) · Current Biology · doi:10.1016/j.cub.2017.09.029 · Cited by 47
Self-citationAncient DNA analysis of a nineteenth century tobacco pipe from a Maryland slave quarter
Schablitsky, J. M., Witt, K. E., Madrigal, J. R., Ellegaard, M. R., Malhi, R. S., & Schroeder, H. (2019) · Journal of Archaeological Science · doi:10.1016/j.jas.2019.02.006 · Cited by 27
Metadata
- Authors
- Skoglund, P., Storå, J., Götherström, A., & Jakobsson, M.
- Venue
- Journal of Archaeological Science
- Publisher
- Elsevier BV
- Published
- 2013-12
- Volume
- 40
- Issue
- 12
- Pages
- 4477-4482
- ISSN
- 0305-4403
- Cited by
- 513
- References
- 9
- Language
- en
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
