Southern African ancient genomes estimate modern human divergence to 350,000 to 260,000 years ago

The Sequence Alignment/Map format and SAMtools

Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G., Durbin, R., & 1000 Genome Project Data Processing Subgroup (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp352 · Cited by 62,041 · see citing works

Fast and accurate short read alignment with Burrows-Wheeler transform

Li, H., & Durbin, R. (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp324 · Cited by 58,607 · see citing works

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

McKenna, A., Hanna, M., Banks, E., Sivachenko, A., Cibulskis, K., Kernytsky, A., Garimella, K., Altshuler, D., Gabriel, S., Daly, M., et al. (2010) · Genome Research · doi:10.1101/gr.107524.110 · Cited by 27,895 · see citing works

A global reference for human genetic variation

The 1000 Genomes Project Consortium, authors, C., Auton, A., Abecasis, G. R., Steering committee, Altshuler, D. M., Durbin, R. M., Abecasis, G. R., Bentley, D. R., Chakravarti, A., et al. (2015) · Nature · doi:10.1038/nature15393 · Cited by 18,247 · see citing works

The variant call format and VCFtools

Danecek, P., Auton, A., Abecasis, G. R., Albers, C. A., Banks, E., DePristo, M. A., Handsaker, R. E., Lunter, G. A., Marth, G., Sherry, S. T., et al. (2011) · Bioinformatics · doi:10.1093/bioinformatics/btr330 · Cited by 16,008 · see citing works

Second-generation PLINK: rising to the challenge of larger and richer datasets

Chang, C. C., Chow, C. C., Tellier, L. C., Vattikuti, S., Purcell, S. M., & Lee, J. J. (2015) · Gigascience · doi:10.1186/s13742-015-0047-8 · Cited by 12,709 · see citing works

Fast and accurate long-read alignment with Burrows-Wheeler transform.

Li, H., & Durbin, R. (2010) · Bioinformatics · doi:10.1093/bioinformatics/btp698 · Cited by 12,063 · see citing works

Principal components analysis corrects for stratification in genome-wide association studies

Price, A. L., Patterson, N. J., Plenge, R. M., Weinblatt, M. E., Shadick, N. A., & Reich, D. (2006) · Nature Genetics · doi:10.1038/ng1847 · Cited by 10,248 · see citing works

Fast model-based estimation of ancestry in unrelated individuals

Alexander, D. H., Novembre, J., & Lange, K. (2009) · Genome Research · doi:10.1101/gr.094052.109 · Cited by 9,898 · see citing works

Bayesian Analysis of Radiocarbon Dates

Bronk Ramsey, C. (2009) · Radiocarbon · doi:10.1017/s0033822200033865 · Cited by 8,725 · see citing works

A map of human genome variation from population-scale sequencing.

The 1000 Genomes Project Consortium (2010) · Nature · doi:10.1038/nature09534 · Cited by 7,877 · see citing works

CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure

Jakobsson, M., & Rosenberg, N. A. (2007) · Bioinformatics · doi:10.1093/bioinformatics/btm233 · Cited by 6,309 · see citing works

Population Structure and Eigenanalysis

Patterson, N., Price, A. L., & Reich, D. (2006) · PLoS Genetics · doi:10.1371/journal.pgen.0020190 · Cited by 5,280 · see citing works

distruct : a program for the graphical display of population structure

Rosenberg, N. A. (2003) · Molecular Ecology Notes · doi:10.1046/j.1471-8286.2003.00566.x · Cited by 4,959 · see citing works

ANGSD: Analysis of Next Generation Sequencing Data

Korneliussen, T. S., Albrechtsen, A., & Nielsen, R. (2014) · BMC Bioinformatics · doi:10.1186/s12859-014-0356-4 · Cited by 2,982 · see citing works

Ancient Admixture in Human History

Patterson, N., Moorjani, P., Luo, Y., Mallick, S., Rohland, N., Zhan, Y., Genschoreck, T., Webster, T., & Reich, D. (2012) · Genetics · doi:10.1534/genetics.112.145037 · Cited by 2,848 · see citing works

The complete genome sequence of a Neanderthal from the Altai Mountains

Prüfer, K., Racimo, F., Patterson, N., Jay, F., Sankararaman, S., Sawyer, S., Heinze, A., Renaud, G., Sudmant, P. H., de Filippo, C., et al. (2014) · Nature · doi:10.1038/nature12886 · Cited by 2,254 · see citing works

Association of Trypanolytic ApoL1 Variants with Kidney Disease in African Americans

Genovese, G., Friedman, D. J., Ross, M. D., Lecordier, L., Uzureau, P., Freedman, B. I., Bowden, D. W., Langefeld, C. D., Oleksyk, T. K., Uscinski Knob, A. L., et al. (2010) · Science · doi:10.1126/science.1193032 · Cited by 2,028 · see citing works

A high-coverage genome sequence from an archaic denisovan individual

Meyer, M., Kircher, M., Gansauge, M.-T., Li, H., Racimo, F., Mallick, S., Schraiber, J. G., Jay, F., Prüfer, K., de Filippo, C., et al. (2012) · Science · doi:10.1126/science.1224344 · Cited by 1,967 · see citing works

A Fast and Flexible Statistical Model for Large-Scale Population Genotype Data: Applications to Inferring Missing Genotypes and Haplotypic Phase

Scheet, P. A., & Stephens, M. (2006) · The American Journal of Human Genetics · doi:10.1086/502802 · Cited by 1,949 · see citing works

SHCal13 Southern Hemisphere Calibration, 0–50,000 Years cal BP

Hogg, A. G., Hua, Q., Blackwell, P. G., Niu, M., Buck, C. E., Guilderson, T. P., Heaton, T., Palmer, J., Reimer, P. J., Reimer, R., et al. (2013) · Radiocarbon · doi:10.2458/azu_js_rc.55.16783 · Cited by 1,843 · see citing works

Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation

van Oven, M., & Kayser, M. (2009) · Human Mutation · doi:10.1002/humu.20921 · Cited by 1,810 · see citing works

The Simons Genome Diversity Project: 300 genomes from 142 diverse populations

Mallick, S., Li, H., Lipson, M., Mathieson, I., Gymrek, M., Racimo, F., Zhao, M., Chennagiri, N., Nordenfelt, S., Tandon, A., et al. (2016) · Nature · doi:10.1038/nature18964 · Cited by 1,584 · see citing works

Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments

Dabney, J., Knapp, M., Glocke, I., Gansauge, M.-T., Weihmann, A., Nickel, B., Valdiosera, C., García, N., Pääbo, S., Arsuaga, J.-L., et al. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1314445110 · Cited by 1,443 · see citing works

Ancient human genomes suggest three ancestral populations for present-day Europeans

Lazaridis, I., Patterson, N., Mittnik, A., Renaud, G., Mallick, S., Kirsanow, K., Sudmant, P. H., Schraiber, J. G., Castellano, S., Lipson, M., et al. (2014) · Nature · doi:10.1038/nature13673 · Cited by 1,357 · see citing works

New fossils from Jebel Irhoud, Morocco and the pan-African origin of Homo sapiens.

Hublin, J.-J., Ben-Ncer, A., Bailey, S. E., Freidline, S. E., Neubauer, S., Skinner, M. M., Bergmann, I., Le Cabec, A., Benazzi, S., Harvati, K., et al. (2017) · Nature · doi:10.1038/nature22336 · Cited by 1,347 · see citing works

African Populations and the Evolution of Human Mitochondrial DNA

Vigilant, L., Stoneking, M., Harpending, H. C., Hawkes, K., & Wilson, A. C. (1991) · Science · doi:10.1126/science.1840702 · Cited by 1,342 · see citing works

Inferring human population size and separation history from multiple genome sequences

Schiffels, S., & Durbin, R. M. (2014) · Nature Genetics · doi:10.1038/ng.3015 · Cited by 1,051 · see citing works

Pleistocene Homo sapiens from Middle Awash, Ethiopia

White, T. D., Asfaw, B., DeGusta, D., Gilbert, H., Richards, G. D., Suwa, G., & Clark Howell, F. (2003) · Nature · doi:10.1038/nature01669 · Cited by 1,032 · see citing works

Stratigraphic placement and age of modern humans from Kibish, Ethiopia

McDougall, I., Brown, F. H., & Fleagle, J. G. (2005) · Nature · doi:10.1038/nature03258 · Cited by 1,023 · see citing works

Patterns of damage in genomic DNA sequences from a neandertal

Briggs, A. W., Stenzel, U., Johnson, P. L. F., Green, R. E., Kelso, J., Prüfer, K., Meyer, M., Krause, J., Ronan, M. T., Lachmann, M., et al. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0704665104 · Cited by 981 · see citing works

Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans

Raghavan, M., Skoglund, P., Graf, K. E., Metspalu, M., Albrechtsen, A., Moltke, I., Rasmussen, S., Stafford Jr, T. W., Orlando, L., Metspalu, E., et al. (2014) · Nature · doi:10.1038/nature12736 · Cited by 963 · see citing works

The genetic history of Ice Age Europe

Fu, Q., Posth, C., Hajdinjak, M., Petr, M., Mallick, S., Fernandes, D., Furtwängler, A., Haak, W., Meyer, M., Mittnik, A., et al. (2016) · Nature · doi:10.1038/nature17993 · Cited by 959 · see citing works

RFMix: A Discriminative Modeling Approach for Rapid and Robust Local-Ancestry Inference

Maples, B. K., Gravel, S., Kenny, E. E., & Bustamante, C. D. (2013) · The American Journal of Human Genetics · doi:10.1016/j.ajhg.2013.06.020 · Cited by 900 · see citing works

Tracing the peopling of the world through genomics

Nielsen, R., Akey, J. M., Jakobsson, M., Pritchard, J. K., Tishkoff, S., & Willerslev, E. (2017) · Nature · doi:10.1038/nature21347 · Cited by 728 · see citing works

The African Genome Variation Project shapes medical genetics in Africa

Gurdasani, D., Carstensen, T., Ayele, F. T., Pagani, L., Tachmazidou, I., Hatzikotoulas, K., Karthikeyan, S., Iles, L., Pollard, M., Choudhury, A., et al. (2014) · Nature · doi:10.1038/nature13997 · Cited by 636 · see citing works

Revising the human mutation rate: implications for understanding human evolution

Scally, A., & Durbin, R. (2012) · Nature Reviews Genetics · doi:10.1038/nrg3295 · Cited by 610 · see citing works

A Complete Neandertal Mitochondrial Genome Sequence Determined by High-Throughput Sequencing

Green, R. E., Malaspinas, A., Krause, J., Briggs, A. W., Johnson, P. L. F., Uhler, C., Meyer, M., Good, J. M., Maričić, T., Stenzel, U., et al. (2008) · Cell · doi:10.1016/j.cell.2008.06.021 · Cited by 601 · see citing works

Origins and Genetic Legacy of Neolithic Farmers and Hunter-Gatherers in Europe

Skoglund, P., Malmström, H., Raghavan, M., Storå, J., Hall, P. N., Willerslev, E., Gilbert, M. T. P., Götherström, A., & Jakobsson, M. (2012) · Science · doi:10.1126/science.1216304 · Cited by 593 · see citing works

Bayesian inference of ancient human demography from individual genome sequences

Gronau, I., Hubisz, M. J., Gulko, B., Danko, C. G., & Siepel, A. C. (2011) · Nature Genetics · doi:10.1038/ng.937 · Cited by 580 · see citing works

Modern human origins: progress and prospects

Stringer, C. (2002) · Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences · doi:10.1098/rstb.2001.1057 · Cited by 534 · cited 2× · see citing works

A “Copernican” Reassessment of the Human Mitochondrial DNA Tree from its Root

Behar, D. M., van Oven, M., Rosset, S., Metspalu, M., Loogväli, E., Silva, N. M., Kivisild, T., Torroni, A., & Villems, R. (2012) · The American Journal of Human Genetics · doi:10.1016/j.ajhg.2012.03.002 · Cited by 522 · see citing works

Accurate sex identification of ancient human remains using DNA shotgun sequencing

Skoglund, P., Storå, J., Götherström, A., & Jakobsson, M. (2013) · Journal of Archaeological Science · doi:10.1016/j.jas.2013.07.004 · Cited by 510 · see citing works

Hunter-gatherer genomic diversity suggests a southern African origin for modern humans

Henn, B. M., Gignoux, C. R., Jobin, M., Granka, J. M., Macpherson, J. M., Kidd, J. M., Rodríguez-Botigué, L., Ramachandran, S., Hon, L., Brisbin, A., et al. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1017511108 · Cited by 502 · see citing works

Harvesting the fruit of the human mtDNA tree

Torroni, A., Achilli, A., Macaulay, V. A., Richards, M. B., & Bandelt, H. (2006) · Trends in Genetics · doi:10.1016/j.tig.2006.04.001 · Cited by 494 · see citing works

The Making of the African mtDNA Landscape

Salas, A., Richards, M. B., Fé, T. D. L., Lareu, M. V., Sobrino, B., Sánchez‐Diz, P., Macaulay, V. A., & Carracedo, Á. (2002) · The American Journal of Human Genetics · doi:10.1086/344348 · Cited by 493 · see citing works

Temporal patterns of nucleotide misincorporations and DNA fragmentation in ancient DNA

Sawyer, S., Krause, J., Guschanski, K., Savolainen, V., & Pääbo, S. (2012) · PLoS ONE · doi:10.1371/journal.pone.0034131 · Cited by 489 · see citing works

A recent bottleneck of Y chromosome diversity coincides with a global change in culturePreprint

Karmin, M., Karmin, M., Kivisild, T., Sayres, M. A. W., Järve, M., Talas, U. G., Rootsi, S., Ilumäe, A.-M., Mägi, R., Mitt, M., et al. (2015) · Genome Research · doi:10.1101/gr.186684.114 · Cited by 468 · see citing works

Genomic Variation in Seven Khoe-San Groups Reveals Adaptation and Complex African History

Schlebusch, C. M., Skoglund, P., Sjödin, P., Gattepaille, L. M., Hernandez, D. G., Jay, F., Li, S., de Jongh, M., Singleton, A., Blum, M. G. B., et al. (2012) · Science · doi:10.1126/science.1227721 · Cited by 457 · see citing works

The Dawn of Human Matrilineal Diversity

Behar, D. M., Villems, R., Soodyall, H., Blue-Smith, J., Pereira, L., Metspalu, E., Scozzari, R., Makkan, H., Tzur, S., Comas, D., et al. (2008) · The American Journal of Human Genetics · doi:10.1016/j.ajhg.2008.04.002 · Cited by 454 · see citing works

Genomic insights into the peopling of the Southwest Pacific

Skoglund, P., Posth, C., Sirak, K., Spriggs, M., Valentin, F., Bedford, S., Clark, G. R., Reepmeyer, C., Petchey, F., Fernandes, D., et al. (2016) · Nature · doi:10.1038/nature19844 · Cited by 414 · see citing works

The global distribution of the Duffy blood group

Howes, R. E., Patil, A. P., Piel, F. B., Nyangiri, O. A., Kabaria, C. W., Gething, P. W., Zimmerman, P. A., Barnadas, C., Beall, C. M., Gebremedhin, A., et al. (2011) · Nature Communications · doi:10.1038/ncomms1265 · Cited by 390 · see citing works

Going global by adapting local: A review of recent human adaptation

Fan, S., Hansen, M. E. B., Lo, Y., & Tishkoff, S. A. (2016) · Science · doi:10.1126/science.aaf5098 · Cited by 378 · see citing works

Genomic Diversity and Admixture Differs for Stone-Age Scandinavian Foragers and Farmers

Skoglund, P., Malmström, H., Omrak, A., Raghavan, M., Valdiosera, C. E., Günther, T., Hall, P. N., Tambets, K., Parik, J., Sjögren, K.-G., et al. (2014) · Science · doi:10.1126/science.1253448 · Cited by 369 · see citing works

Hunters and Herders of Southern Africa

Barnard, A. (1992) · Cambridge University Press eBooks · doi:10.1017/cbo9781139166508 · Cited by 350 · see citing works

The genetic prehistory of southern Africa

Pickrell, J. K., Patterson, N. J., Barbieri, C., Berthold, F., Gerlach, L., Güldemann, T., Kure, B., Mpoloka, S. W., Nakagawa, H., Naumann, C., et al. (2012) · Nature Communications · doi:10.1038/ncomms2140 · Cited by 342 · see citing works

Evolutionary History and Adaptation from High-Coverage Whole-Genome Sequences of Diverse African Hunter-Gatherers

Lachance, J., Vernot, B., Elbers, C. C., Ferwerda, B., Froment, A., Bodo, J.-M., Lema, G., Fu, W., Nyambo, T., Rebbeck, T. R., et al. (2012) · Cell · doi:10.1016/j.cell.2012.07.009 · Cited by 334 · see citing works

Estimating genetic kin relationships in prehistoric populations

Monroy Kuhn, J. M., Jakobsson, M., & Günther, T. (2018) · PLOS ONE · doi:10.1371/journal.pone.0195491 · Cited by 330 · see citing works

On the importance of being structured: instantaneous coalescence rates and human evolution—lessons for ancestral population size inference?

Mazet, O., Rodríguez, W., Grusea, S., Boitard, S., & Chikhi, L. (2015) · Heredity · doi:10.1038/hdy.2015.104 · Cited by 325 · see citing works

Hunters and Herders of Southern Africa. A Comparative Ethnography of the Khoisan Peoples

Klinghardt, G. P., & Barnard, A. (1993) · The South African Archaeological Bulletin · doi:10.2307/3888880 · Cited by 309 · see citing works

Genetic evidence for archaic admixture in Africa

Hammer, M. F., Woerner, A. E., Mendez, F. L., Watkins, J. C., & Wall, J. D. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1109300108 · Cited by 304 · see citing works

Ancient west Eurasian ancestry in southern and eastern Africa

Pickrell, J. K., Patterson, N., Loh, P.-R., Lipson, M., Berger, B., Stoneking, M., Pakendorf, B., & Reich, D. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1313787111 · Cited by 300 · see citing works

Ancient Ethiopian genome reveals extensive Eurasian admixture in Eastern Africa

Gallego-Llorente, M., Jones, E. R., Eriksson, A., Siska, V., Arthur, K. W., Arthur, J. W., Curtis, M. C., Stock, J. T., Coltorti, M., Pieruccini, P., et al. (2015) · Science · doi:10.1126/science.aad2879 · Cited by 291 · see citing works

Ancient genomes link early farmers from Atapuerca in Spain to modern-day Basques

Günther, T., Valdiosera, C., Malmström, H., Ureña, I., Rodriguez-Varela, R., Sverrisdóttir, Ó. O., Daskalaki, E. A., Skoglund, P., Naidoo, T., Svensson, E. M., et al. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1509851112 · Cited by 278 · see citing works

History of Click-Speaking Populations of Africa Inferred from mtDNA and Y Chromosome Genetic Variation

Tishkoff, S. A., Gonder, M. K., Henn, B. M., Mortensen, H. M., Knight, A., Gignoux, C. R., Fernandopulle, N. D., Lema, G., Nyambo, T., Ramakrishnan, U., et al. (2007) · Molecular Biology and Evolution · doi:10.1093/molbev/msm155 · Cited by 276 · see citing works

Direct dating of Florisbad hominid

Grün, R., Brink, J. S., Spooner, N. A., Taylor, L., Stringer, C. B., Franciscus, R. G., & Murray, A. S. (1996) · Nature · doi:10.1038/382500a0 · Cited by 270 · see citing works

Dispersals and genetic adaptation of Bantu-speaking populations in Africa and North America

Patin, É., Lopez, M., Grollemund, R., Verdu, P., Harmant, C., Quach, H., Laval, G., Perry, G. H., Barreiro, L. B., Froment, A., et al. (2017) · Science · doi:10.1126/science.aal1988 · Cited by 270 · see citing works

The Expansion of mtDNA Haplogroup L3 within and out of Africa

Soares, P. A., Alshamali, F., Pereira, J. B., Fernandes, V., Silva, N. M., Afonso, C., Costa, M. D., Musilová, E., Macaulay, V. A., Richards, M. B., et al. (2011) · Molecular Biology and Evolution · doi:10.1093/molbev/msr245 · Cited by 254 · see citing works

Genetic variation reveals large-scale population expansion and migration during the expansion of Bantu-speaking peoples

Li, S., Schlebusch, C. M., & Jakobsson, M. (2014) · Proceedings of the Royal Society B Biological Sciences · doi:10.1098/rspb.2014.1448 · Cited by 246 · see citing works

Analysis of High-Throughput Ancient DNA Sequencing Data

Kircher, M. (2012) · Methods in Molecular Biology · doi:10.1007/978-1-61779-516-9_23 · Cited by 236 · see citing works

Ethiopian Genetic Diversity Reveals Linguistic Stratification and Complex Influences on the Ethiopian Gene Pool

Pagani, L., Kivisild, T., Tarekegn, A., Ekong, R., Plaster, C., Gallego Romero, I., Ayub, Q., Mehdi, S. Q., Thomas, M. G., Luiselli, D., et al. (2012) · The American Journal of Human Genetics · doi:10.1016/j.ajhg.2012.05.015 · Cited by 230 · see citing works

mtDNA Variation in the South African Kung and Khwe—and Their Genetic Relationships to Other African Populations

Chen, Y., Olckers, A., Schurr, T. G., Kogelnik, A. M., Huoponen, K., & Wallace, D. C. (2000) · The American Journal of Human Genetics · doi:10.1086/302848 · Cited by 223 · see citing works

Human pigmentation genes under environmental selection

Sturm, R. A., & Duffy, D. L. (2012) · Genome biology · doi:10.1186/gb-2012-13-9-248 · Cited by 203 · see citing works

Seeing the Wood for the Trees: A Minimal Reference Phylogeny for the Human Y Chromosome

van Oven, M., Geystelen, A. V., Kayser, M., Decorte, R., & Larmuseau, M. (2013) · Human Mutation · doi:10.1002/humu.22468 · Cited by 169 · see citing works

Genetic Architecture of Skin and Eye Color in an African-European Admixed Population

Beleza, S., Johnson, N. A., Candille, S. I., Absher, D. M., Coram, M. A., Lopes, J., Campos, J., Araújo, I. I., Anderson, T. M., Vilhjálmsson, B. J., et al. (2013) · PLoS Genetics · doi:10.1371/journal.pgen.1003372 · Cited by 161 · see citing works

Lactase Persistence Alleles Reveal Partial East African Ancestry of Southern African Khoe Pastoralists

Breton, G., Schlebusch, C. M., Lombard, M., Sjödin, P., Soodyall, H., & Jakobsson, M. (2014) · Current Biology · doi:10.1016/j.cub.2014.02.041 · Cited by 160 · see citing works

HAPLOFIND: A New Method for High-Throughput mtDNA Haplogroup Assignment

Vianello, D., Sevini, F., Castellani, G., Lomartire, L., Capri, M., & Franceschi, C. (2013) · Human Mutation · doi:10.1002/humu.22356 · Cited by 149 · see citing works

Unraveling the complex maternal history of Southern African Khoisan populations

Barbieri, C., Güldemann, T., Naumann, C., Gerlach, L., Berthold, F., Nakagawa, H., Mpoloka, S. W., Stoneking, M., & Pakendorf, B. (2013) · American Journal of Physical Anthropology · doi:10.1002/ajpa.22441 · Cited by 131 · see citing works

More on Contamination: The Use of Asymmetric Molecular Behavior to Identify Authentic Ancient Human DNA

Malmström, H., Svensson, E., Gilbert, M. T. P., Willerslev, E., Götherström, A., & Holmlund, G. (2007) · Molecular Biology and Evolution · doi:10.1093/molbev/msm015 · Cited by 125 · see citing works

MtDNA control region variation affirms diversity and deep sub-structure in populations from southern Africa

Schlebusch, C. M., Lombard, M., & Soodyall, H. (2013) · BMC Evolutionary Biology · doi:10.1186/1471-2148-13-56 · Cited by 121 · see citing works

Homo naledi and Pleistocene hominin evolution in subequatorial Africa

Berger, L. R., Hawks, J. D., Dirks, P. H. G. M., Elliott, M., & Roberts, E. M. (2017) · eLife · doi:10.7554/elife.24234 · Cited by 119 · see citing works

Population genetic analysis of the DARC locus (Duffy) reveals adaptation from standing variation associated with malaria resistance in humans

McManus, K. F., Oill, A. M. T., Henn, B. M., Bustamante, C. D., Sikora, M., & Cornejo, O. E. (2017) · PLoS Genetics · doi:10.1371/journal.pgen.1006560 · Cited by 112 · see citing works

Genotype–phenotype associations and human eye color

White, D., & Rabago-Smith, M. (2010) · Journal of Human Genetics · doi:10.1038/jhg.2010.126 · Cited by 109 · see citing works

Khoisan hunter-gatherers have been the largest population throughout most of modern-human demographic history

Kim, H. L., Ratan, A., Perry, G. H., Montenegro, Á., Miller, W., & Schuster, S. C. (2014) · Nature Communications · doi:10.1038/ncomms6692 · Cited by 95 · see citing works

Refining the Y chromosome phylogeny with southern African sequences

Barbieri, C., Hübner, A., Macholdt, E., Ni, S., Lippold, S., Schröder, R., Mpoloka, S. W., Purps, J., Roewer, L., Stoneking, M., et al. (2016) · Human Genetics · doi:10.1007/s00439-016-1651-0 · Cited by 89 · see citing works

The study of human Y chromosome variation through ancient DNA

Kivisild, T. (2017) · Human Genetics · doi:10.1007/s00439-017-1773-z · Cited by 88 · see citing works

Different contributions of ancient mitochondrial and Y-chromosomal lineages in ‘Karretjie people’ of the Great Karoo in South Africa

Schlebusch, C. M., de Jongh, M., & Soodyall, H. (2011) · Journal of Human Genetics · doi:10.1038/jhg.2011.71 · Cited by 86 · see citing works

Phylogeography of the human mitochondrial haplogroup L3e: a snapshot of African prehistory and Atlantic slave trade.

Bandelt, H.-J., Alves‐Silva, J., Guimarães, P. E. M., Santos, M., Brehm, A., Pereira, L., Coppa, A., Larruga, J. M., Rengo, C., Scozzari, R., et al. (2001) · PubMed · doi:10.1017/s0003480001008892 · Cited by 79 · see citing works

Phylogeography of the human mitochondrial haplogroup L3e: a snapshot of African prehistory and Atlantic slave trade

Bandelt, H. J., Alves‐Silva, J., Guimarães, P. E. M., Santos, M., Brehm, A., Pereira, L., Coppa, A., Larruga, J. M., Rengo, C., Scozzari, R., et al. (2001) · Annals of Human Genetics · doi:10.1046/j.1469-1809.2001.6560549.x · Cited by 76 · see citing works

Estimation of Population Divergence Times from Non-Overlapping Genomic Sequences: Examples from Dogs and Wolves

Skoglund, P., Götherström, A., & Jakobsson, M. (2010) · Molecular Biology and Evolution · doi:10.1093/molbev/msq342 · Cited by 73 · see citing works

Pleistocene Homo and the updated Stone Age sequence of South Africa

Dusseldorp, G. L., Lombard, M., & Wurz, S. (2013) · South African Journal of Science · doi:10.1590/sajs.2013/20120042 · Cited by 70 · see citing works

Preparation of Next-Generation Sequencing Libraries from Damaged DNA

Briggs, A. W., & Heyn, P. C. (2011) · Methods in molecular biology · doi:10.1007/978-1-61779-516-9_18 · Cited by 61 · see citing works

Development of a single base extension method to resolve Y chromosome haplogroups in sub-Saharan African populations

Naidoo, T., Schlebusch, C. M., Makkan, H., Patel, P., Mahabeer, R., Erasmus, J. C., & Soodyall, H. (2010) · Investigative Genetics · doi:10.1186/2041-2223-1-6 · Cited by 52 · see citing works

First Ancient Mitochondrial Human Genome from a Prepastoralist Southern African

Morris, A. G., Heinze, A., Chan, E. K. F., Smith, A. B., & Hayes, V. M. (2014) · Genome Biology and Evolution · doi:10.1093/gbe/evu202 · Cited by 50 · see citing works

Evidence for Site-Specific Occupancy of the Mitochondrial Genome by Nuclear Transcription Factors

Marinov, G. K., Wang, Y. E., Chan, D. C., & Wold, B. J. (2014) · PLoS ONE · doi:10.1371/journal.pone.0084713 · Cited by 43 · see citing works

Unsettled times: shaded polychrome paintings and hunter-gatherer history in the southeastern mountains of southern Africa

Mazel, A. D. (2009) · Newcastle University ePrints (Newcastle Univesity) · doi:10.25405/ncl.34119201 · Cited by 38 · see citing works

‘ What is consumed is wasted’: from foraging to herding in the southern African Later Stone Age

Russell, T., & Lander, F. (2015) · Azania Archaeological Research in Africa · doi:10.1080/0067270x.2015.1079082 · Cited by 35 · see citing works

Revised Timeline and Distribution of the Earliest Diverged Human Maternal Lineages in Southern Africa

Chan, E. K. F., Hardie, R., Petersen, D. C., Beeson, K. Y., Bornman, R. M. S., Smith, A. B., & Hayes, V. M. (2015) · PLoS ONE · doi:10.1371/journal.pone.0121223 · Cited by 34 · see citing works

The disappearing San of southeastern Africa and their genetic affinities

Schlebusch, C. M., Prins, F. E., Lombard, M., Jakobsson, M., & Soodyall, H. (2016) · Human Genetics · doi:10.1007/s00439-016-1729-8 · Cited by 31 · see citing works

Rock art sequences in uKhahlamba-Drakensberg Park, South Africa

Swart, J. (2004) · Cited by 27 · see citing works

An ATP2B4 Polymorphism Protects Against Malaria in Pregnancy

Bedu‐Addo, G., Meese, S., & Mockenhaupt, F. P. (2013) · The Journal of Infectious Diseases · doi:10.1093/infdis/jit070 · Cited by 26 · see citing works

Population history and economic change in the last 2000 years in KwaZulu-Natal, RSA

Ribot, I., Morris, A. G., Sealy, J. C., & Maggs, T. (2016) · Cited by 20 · see citing works

Two disparate instances of healed cranial trauma from the later stone age of South Africa

Pfeiffer, S. (2012) · The South African Archaeological Bulletin · Cited by 13 · see citing works

Untitled work

Yang, D. Y. (1998) · doi:10.1002/(sici)1096-8644(199804)105:4

Pliocene and Eocene provide best analogs for near-future climates

Burke, K. D., Williams, J. W., Chandler, M. A., Haywood, A. M., Lunt, D. J., & Otto-Bliesner, B. L. (2018) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1809600115 · Cited by 624 · see citing works

Did Our Species Evolve in Subdivided Populations across Africa, and Why Does It Matter?

Scerri, E. M. L., Thomas, M., Manica, A., Gunz, P., Stock, J. T., Stringer, C. B., Grove, M. L., Groucutt, H. S., Timmermann, A., Rightmire, G. P., et al. (2018) · Trends in Ecology & Evolution · doi:10.1016/j.tree.2018.05.005 · Cited by 505 · see citing works

Origins of modern human ancestry

Bergström, A., Stringer, C. B., Hajdinjak, M., Scerri, E. M. L., & Skoglund, P. (2021) · Nature · doi:10.1038/s41586-021-03244-5 · Cited by 426 · see citing works

The Allen Ancient DNA Resource (AADR) a curated compendium of ancient human genomes

Mallick, S., Micco, A., Mah, M., Ringbauer, H., Lazaridis, I., Olalde, Í., Patterson, N. J., & Reich, D. (2024) · Scientific Data · doi:10.1038/s41597-024-03031-7 · Cited by 438 · see citing works

Identifying and Interpreting Apparent Neanderthal Ancestry in African Individuals

Chen, L., Wolf, A. B., Fu, W., Li, L., & Akey, J. M. (2020) · Cell · doi:10.1016/j.cell.2020.01.012 · Cited by 254 · see citing works

Population genomics of Mesolithic Scandinavia: Investigating early postglacial migration routes and high-latitude adaptation

Günther, T., Malmström, H., Svensson, E., Omrak, A., Sánchez‐Quinto, F., Kılınç, G. M., Krzewińska, M., Eriksson, G., Fraser, M., Edlund, H., et al. (2018) · PLoS Biology · doi:10.1371/journal.pbio.2003703 · Cited by 247 · see citing works

Ancient Genomics of Modern Humans: The First Decade

Skoglund, P., & Mathieson, I. (2018) · Annual Review of Genomics and Human Genetics · doi:10.1146/annurev-genom-083117-021749 · Cited by 246 · see citing works

Pleistocene North African genomes link Near Eastern and sub-Saharan African human populations

van de Loosdrecht, M. S., Bouzouggar, A., Humphrey, L., Posth, C., Barton, N., Aximu‐Petri, A., Nickel, B., Nagel, S., Talbi, E. H., Hajraoui, M. A. E., et al. (2018) · Science · doi:10.1126/science.aar8380 · Cited by 241 · see citing works

The presence and impact of reference bias on population genomic studies of prehistoric human populations

Günther, T., & Nettelblad, C. (2019) · PLOS Genetics · doi:10.1371/journal.pgen.1008302 · Cited by 228 · see citing works

Limits of long-term selection against Neandertal introgression

Petr, M., Pääbo, S., Kelso, J., & Vernot, B. (2019) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1814338116 · Cited by 211 · see citing works

Ancient DNA reveals a multistep spread of the first herders into sub-Saharan Africa

Prendergast, M. E., Lipson, M., Sawchuk, E., Olalde, Í., Ogola, C. A., Rohland, N., Sirak, K. A., Adamski, N., Bernardos, R. L., Broomandkhoshbacht, N., et al. (2019) · Science · doi:10.1126/science.aaw6275 · Cited by 196 · see citing works

African evolutionary history inferred from whole genome sequence data of 44 indigenous African populations

Fan, S., Kelly, D. E., Beltrame, M. H., Hansen, M. E. B., Mallick, S., Ranciaro, A., Hirbo, J., Thompson, S., Beggs, W., Nyambo, T., et al. (2019) · Genome Biology · doi:10.1186/s13059-019-1679-2 · Cited by 194 · see citing works

African genetic diversity and adaptation inform a precision medicine agenda

Pereira, L., Mutesa, L., Tindana, P. O., & Ramsay, M. (2021) · Nature Reviews Genetics · doi:10.1038/s41576-020-00306-8 · Cited by 188 · see citing works

Harnessing ancient genomes to study the history of human adaptation

Marciniak, S., & Perry, G. H. (2017) · Nature Reviews Genetics · doi:10.1038/nrg.2017.65 · Cited by 182 · see citing works

A unified genealogy of modern and ancient genomes

Wohns, A. W., Wong, Y., Jeffery, B., Akbari, A., Mallick, S., Pinhasi, R., Patterson, N. J., Reich, D., Kelleher, J., & McVean, G. (2022) · Science · doi:10.1126/science.abi8264 · Cited by 182 · see citing works

Ancient West African foragers in the context of African population history

Lipson, M., Ribot, I., Mallick, S., Rohland, N., Olalde, Í., Adamski, N., Broomandkhoshbacht, N., Lawson, A. M., López, S., Oppenheimer, J., et al. (2020) · Nature · doi:10.1038/s41586-020-1929-1 · Cited by 173 · see citing works

Recovering signals of ghost archaic introgression in African populations

Durvasula, A., & Sankararaman, S. (2020) · Science Advances · doi:10.1126/sciadv.aax5097 · Cited by 158 · see citing works

Insights into human history from the first decade of ancient human genomics

Liu, Y., Mao, X., Krause, J., & Fu, Q. (2021) · Science · doi:10.1126/science.abi8202 · Cited by 163 · see citing works

A harmonized public resource of deeply sequenced diverse human genomesPreprint

Koenig, Z., Yohannes, M. T., Nkambule, L. L., Zhao, X., Goodrich, J. K., Kim, H. A., Wilson, M. W., Tiao, G., Hao, S. P., Sahakian, N., et al. (2024) · Genome Research · doi:10.1101/gr.278378.123 · Cited by 160 · see citing works

Ancient DNA and deep population structure in sub-Saharan African foragers

Lipson, M., Sawchuk, E., Thompson, J. C., Oppenheimer, J., Tryon, C. A., Ranhorn, K. L., de Luna, K. M., Sirak, K. A., Olalde, Í., Ambrose, S. H., et al. (2022) · Nature · doi:10.1038/s41586-022-04430-9 · Cited by 154 · see citing works

Interspecific Gene Flow Shaped the Evolution of the Genus Canis

Gopalakrishnan, S., Sinding, M. S., Ramos‐Madrigal, J., Niemann, J., Castruita, J. A. S., Vieira, F. G., Carøe, C., de Manuel, M., Kuderna, L. F. K., Serres, A., et al. (2018) · Current Biology · doi:10.1016/j.cub.2018.08.041 · Cited by 150 · see citing works

Tales of Human Migration, Admixture, and Selection in Africa

Schlebusch, C. M., & Jakobsson, M. (2018) · Annual Review of Genomics and Human Genetics · doi:10.1146/annurev-genom-083117-021759 · Cited by 142 · see citing works

Age of the oldest known Homo sapiens from eastern Africa

Vidal, C. M., Lane, C. S., Asrat, A., Barfod, D. N., Mark, D. F., Tomlinson, E. L., Tadesse, A. Z., Yirgu, G., Deino, A. L., Hutchison, W. R., et al. (2022) · Nature · doi:10.1038/s41586-021-04275-8 · Cited by 150 · see citing works

Ancient genomes reveal complex patterns of population movement, interaction, and replacement in sub-Saharan Africa

Wang, K., Goldstein, S. T., Bleasdale, M., Clist, B., Bostoen, K. A. G., Bakwa-Lufu, P., Buck, L. T., Crowther, A., Dème, A., McIntosh, R. J., et al. (2020) · Science Advances · doi:10.1126/sciadv.aaz0183 · Cited by 143 · see citing works

Khoe-San Genomes Reveal Unique Variation and Confirm the Deepest Population Divergence in Homo sapiens

Schlebusch, C. M., Sjödin, P., Breton, G., Günther, T., Naidoo, T., Hollfelder, N., Sjöstrand, A. E., Xu, J., Gattepaille, L. M., Vicente, M., et al. (2020) · Molecular Biology and Evolution · doi:10.1093/molbev/msaa140 · Cited by 142 · see citing works

Aspects of human physical and behavioural evolution during the last 1 million years

Galway‐Witham, J., Cole, J., & Stringer, C. B. (2019) · Journal of Quaternary Science · doi:10.1002/jqs.3137 · Cited by 145 · see citing works

Genomic inference of a severe human bottleneck during the Early to Middle Pleistocene transition

Hu, W., Hao, Z.-Q., Du, P., Vincenzo, F. D., Manzi, G., Cui, J., Fu, Y., Pan, Y.-H., & Li, H. (2023) · Science · doi:10.1126/science.abq7487 · Cited by 142 · see citing works

FADS1 and the Timing of Human Adaptation to Agriculture

Mathieson, S., & Mathieson, I. (2018) · Molecular Biology and Evolution · doi:10.1093/molbev/msy180 · Cited by 130 · see citing works

Genetic substructure and complex demographic history of South African Bantu speakers

Sengupta, D., Choudhury, A., Fortes-Lima, C., Aron, S., Whitelaw, G., Bostoen, K. A. G., Gunnink, H., Chousou‐Polydouri, N., Delius, P., Tollman, S. M., et al. (2021) · Nature Communications · doi:10.1038/s41467-021-22207-y · Cited by 127 · see citing works

Approximate Bayesian computation with deep learning supports a third archaic introgression in Asia and Oceania

Mondal, M., Bertranpetit, J., & Lao, O. (2019) · Nature Communications · doi:10.1038/s41467-018-08089-7 · Cited by 124 · see citing works

Early Middle Palaeolithic culture in India around 385–172 ka reframes Out of Africa models

Kumar, A., Pappu, S., Rajapara, H. M., Gunnell, Y., Shukla, A. D., & Singhvi, A. K. (2018) · Nature · doi:10.1038/nature25444 · Cited by 120 · see citing works

Increased ecological resource variability during a critical transition in hominin evolution

Potts, R., Dommain, R., Moerman, J. W., Behrensmeyer, A. K., Deino, A. L., Riedl, S., Beverly, E. J., Brown, E. T., Deocampo, D. M., Kinyanjui, R. N., et al. (2020) · Science Advances · doi:10.1126/sciadv.abc8975 · Cited by 113 · see citing works

Spatiotemporal landscape genetics: Investigating ecology and evolution through space and time

Fenderson, L. E., Kovach, A. I., & Llamas, B. (2019) · Molecular Ecology · doi:10.1111/mec.15315 · Cited by 113 · see citing works

Cultural hitchhiking and competition between patrilineal kin groups explain the post-Neolithic Y-chromosome bottleneck

Zeng, T.-C., Aw, A. J., & Feldman, M. (2018) · Nature Communications · doi:10.1038/s41467-018-04375-6 · Cited by 72 · see citing works

African population history: an ancient DNA perspective

Vicente, M., & Schlebusch, C. M. (2020) · Current Opinion in Genetics & Development · doi:10.1016/j.gde.2020.05.008 · Cited by 109 · see citing works

A catalog of single nucleotide changes distinguishing modern humans from archaic hominins

Kuhlwilm, M., & Boeckx, C. (2019) · Scientific Reports · doi:10.1038/s41598-019-44877-x · Cited by 108 · see citing works

An ancestral recombination graph of human, Neanderthal, and Denisovan genomes

Schaefer, N. K., Shapiro, B., & Green, R. E. (2021) · Science Advances · doi:10.1126/sciadv.abc0776 · Cited by 106 · see citing works

Dental evolutionary rates and its implications for the Neanderthal–modern human divergence

Gómez-Robles, A. (2019) · Science Advances · doi:10.1126/sciadv.aaw1268 · Cited by 104 · see citing works

Deciphering African late middle Pleistocene hominin diversity and the origin of our species

Mounier, A., & Lahr, M. M. (2019) · Nature Communications · doi:10.1038/s41467-019-11213-w · Cited by 104 · see citing works

Biological Sexing of a 4000-Year-Old Egyptian Mummy Head to Assess the Potential of Nuclear DNA Recovery from the Most Damaged and Limited Forensic Specimens

Loreille, O. M., Ratnayake, S., Bazinet, A. L., Stockwell, T. B., Sommer, D. D., Rohland, N., Mallick, S., Johnson, P. L. F., Skoglund, P., Onorato, A. J., et al. (2018) · Genes · doi:10.3390/genes9030135 · Cited by 104 · see citing works

Imputation of ancient human genomes

da Mota, B. S., Rubinacci, S., Dávalos, D. I. C., Amorim, C. E. G., Sikora, M., Johannsen, N. N., Szmyt, M., Włodarczak, P., Szczepanek, A., Przybyła, M. M., et al. (2023) · Nature Communications · doi:10.1038/s41467-023-39202-0 · Cited by 103 · see citing works

The genetic legacy of the expansion of Bantu-speaking peoples in Africa

Fortes‐Lima, C., Burgarella, C., Hammarén, R., Eriksson, A., Vicente, M., Jolly, C., Semo, A., Gunnink, H., Pacchiarotti, S., Mundeke, L., et al. (2023) · Nature · doi:10.1038/s41586-023-06770-6 · Cited by 102 · see citing works

Ostrich eggshell beads reveal 50,000-year-old social network in Africa

Miller, J. M., & Wang, Y. V. (2021) · Nature · doi:10.1038/s41586-021-04227-2 · Cited by 100 · see citing works

A dispersal of Homo sapiens from southern to eastern Africa immediately preceded the out-of-Africa migration

Rito, T., Vieira, D., Silva, M. S. D., Conde‐Sousa, E., Pereira, L., Mellars, P., Richards, M. B., & Soares, P. A. (2019) · Scientific Reports · doi:10.1038/s41598-019-41176-3 · Cited by 102 · see citing works

Unlocking the origins and biology of domestic animals using ancient DNA and paleogenomics

McHugo, G. P., Dover, M. J., & MacHugh, D. E. (2019) · BMC Biology · doi:10.1186/s12915-019-0724-7 · Cited by 95 · see citing works

Philippine Ayta possess the highest level of Denisovan ancestry in the world

Larena, M., McKenna, J., Sanchez-Quinto, F., Bernhardsson, C., Ebeo, C., Reyes, R., Casel, O., Huang, J.-Y., Hagada, K. P., Guilay, D., et al. (2021) · Current Biology · doi:10.1016/j.cub.2021.07.022 · Cited by 93 · see citing works

Archaic hominin introgression into modern human genomes

Gökçümen, Ö. (2019) · American Journal of Physical Anthropology · doi:10.1002/ajpa.23951 · Cited by 91 · see citing works

Targeted conspiratorial killing, human self-domestication and the evolution of groupishness

Wrangham, R. W. (2021) · Evolutionary Human Sciences · doi:10.1017/ehs.2021.20 · Cited by 92 · see citing works

Whole-genome sequencing reveals a complex African population demographic history and signatures of local adaptation

Fan, S., Spence, J. P., Feng, Y., Hansen, M. E. B., Terhorst, J., Beltrame, M. H., Ranciaro, A., Hirbo, J. B., Beggs, W. R., Thomas, N., et al. (2023) · Cell · doi:10.1016/j.cell.2023.01.042 · Cited by 90 · see citing works

Pleistocene Water Crossings and Adaptive Flexibility Within the Homo Genus

Gaffney, D. (2020) · Journal of Archaeological Research · doi:10.1007/s10814-020-09149-7 · Cited by 89 · see citing works

Bantu-speaker migration and admixture in southern Africa

Choudhury, A., Sengupta, D., Ramsay, M., & Schlebusch, C. M. (2020) · Human Molecular Genetics · doi:10.1093/hmg/ddaa274 · Cited by 85 · see citing works

Ancient proteins provide evidence of dairy consumption in eastern Africa

Bleasdale, M., Richter, K. K., Janzen, A., Brown, S., Scott, A., Zech, J., Wilkin, S., Wang, K., Schiffels, S., Desideri, J., et al. (2021) · Nature Communications · doi:10.1038/s41467-020-20682-3 · Cited by 85 · see citing works

Boots on the ground in Africa's ancient DNA ‘revolution’: archaeological perspectives on ethics and best practices

Prendergast, M. E., & Sawchuk, E. (2018) · Antiquity · doi:10.15184/aqy.2018.70 · Cited by 81 · see citing works

A Review of Cancer Genetics and Genomics Studies in Africa

Rotimi, S. O., Rotimi, O. A., & Salhia, B. (2021) · Frontiers in Oncology · doi:10.3389/fonc.2020.606400 · Cited by 83 · see citing works

Placing Ancient DNA Sequences into Reference Phylogenies

Martiniano, R., Sanctis, B. D., Hallast, P., & Durbin, R. M. (2022) · Molecular Biology and Evolution · doi:10.1093/molbev/msac017 · Cited by 82 · see citing works

Genetic structure and sex‐biased gene flow in the history of southern African populations

Bajić, V., Barbieri, C., Hübner, A., Güldemann, T., Naumann, C., Gerlach, L., Berthold, F., Nakagawa, H., Mpoloka, S. W., Roewer, L., et al. (2018) · American Journal of Physical Anthropology · doi:10.1002/ajpa.23694 · Cited by 81 · see citing works

Trajectories of cultural innovation from the Middle to Later Stone Age in Eastern Africa: Personal ornaments, bone artifacts, and ocher from Panga ya Saidi, Kenya

d’Errico, F., Martí, À. P., Shipton, C., Vraux, E. L., Ndiema, E., Goldstein, S. T., Petraglia, M. D., & Boivin, N. L. (2020) · Journal of Human Evolution · doi:10.1016/j.jhevol.2019.102737 · Cited by 81 · see citing works

Paleo-ENSO influence on African environments and early modern humans

Kaboth‐Bahr, S., Gosling, W. D., Vogelsang, R., Bahr, A., Scerri, E. M. L., Asrat, A., Cohen, A. S., Düsing, W., Foerster, V., Lamb, H. F., et al. (2021) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2018277118 · Cited by 78 · see citing works

Resolving the “muddle in the middle”: The case for Homo bodoensis sp. nov.

Roksandić, M., Radović, P., Wu, X., & Bae, C. J. (2021) · Evolutionary Anthropology Issues News and Reviews · doi:10.1002/evan.21929 · Cited by 76 · see citing works

Genetic Affinities among Southern Africa Hunter-Gatherers and the Impact of Admixing Farmer and Herder Populations

Vicente, M., Jakobsson, M., Ebbesen, P., & Schlebusch, C. M. (2019) · Molecular Biology and Evolution · doi:10.1093/molbev/msz089 · Cited by 76 · see citing works

The Critical Needs and Challenges for Genetic Architecture Studies in Africa

Martin, A. R., Teferra, S., Möller, M., Hoal, E. G., & Daly, M. J. (2018) · Current Opinion in Genetics & Development · doi:10.1016/j.gde.2018.08.005 · Cited by 76 · see citing works

A western route of prehistoric human migration from Africa into the Iberian Peninsula

Fortes, G. G., Tassi, F., Trucchi, E., Henneberger, K., Paijmans, J. L. A., Díez‐del‐Molino, D., Schroeder, H., Susca, R. R., Barroso-Ruíz, C., Bermúdez, F. J. P., et al. (2019) · Proceedings of the Royal Society B Biological Sciences · doi:10.1098/rspb.2018.2288 · Cited by 73 · see citing works

Hunter-gatherer genomes reveal diverse demographic trajectories during the rise of farming in Eastern Africa

Gopalan, S., Berl, R. E. W., Myrick, J. W., Garfield, Z. H., Reynolds, A. W., Bafens, B. K., Belbin, G. M., Mastoras, M., Williams, C., Daya, M., et al. (2022) · Current Biology · doi:10.1016/j.cub.2022.02.050 · Cited by 73 · see citing works

The Emergence of Habitual Ochre Use in Africa and its Significance for The Development of Ritual Behavior During The Middle Stone Age

Dapschauskas, R., Göden, M. B., Sommer, C., & Kandel, A. W. (2022) · Journal of World Prehistory · doi:10.1007/s10963-022-09170-2 · Cited by 76 · see citing works

Clarifying distinct models of modern human origins in Africa

Henn, B. M., Steele, T. E., & Weaver, T. D. (2018) · Current Opinion in Genetics & Development · doi:10.1016/j.gde.2018.10.003 · Cited by 71 · see citing works

Inference of natural selection from ancient DNA

Dehasque, M., Ávila‐Arcos, M. C., Díez‐del‐Molino, D., Fumagalli, M., Guschanski, K., Lorenzen, E. D., Malaspinas, A., Marquès‐Bonet, T., Martin, M. D., Murray, G. G. R., et al. (2020) · Evolution Letters · doi:10.1002/evl3.165 · Cited by 70 · see citing works

Explaining Technology

Koppl, R., Gatti, R., Devereaux, A. N., Fath, B., Herriott, J., Hordijk, W., Kauffman, S., Ulanowicz, R., & Valverde, S. (2023) · Cambridge University Press eBooks · doi:10.1017/9781009386289 · Cited by 25 · see citing works

The structure of the Middle Stone Age of eastern Africa

Blinkhorn, J., & Grove, M. L. (2018) · Quaternary Science Reviews · doi:10.1016/j.quascirev.2018.07.011 · Cited by 69 · see citing works

A Rare Deep-Rooting D0 African Y-Chromosomal Haplogroup and Its Implications for the Expansion of Modern Humans Out of Africa

Haber, M., Jones, A., Connell, B., Asan, Arciero, E., Yang, H., Thomas, M., Xue, Y., & Tyler‐Smith, C. (2019) · Genetics · doi:10.1534/genetics.119.302368 · Cited by 66 · see citing works

Genomic Insights Into the Demographic History of the Southern Chinese

Huang, X., Xia, Z., Bin, X., He, G., Guo, J., Adnan, A., Yin, L., Huang, Y., Zhao, J., Yi-dong, Y., et al. (2022) · Frontiers in Ecology and Evolution · doi:10.3389/fevo.2022.853391 · Cited by 80 · see citing works

Insights into Modern Human Prehistory Using Ancient Genomes

Yang, M. A., & Fu, Q. (2018) · Trends in Genetics · doi:10.1016/j.tig.2017.11.008 · Cited by 65 · see citing works

Population structure and the evolution of Homo sapiens in Africa

Klein, R. G. (2019) · Evolutionary Anthropology Issues News and Reviews · doi:10.1002/evan.21788 · Cited by 65 · see citing works

Microbial symbiosis and coevolution of an entire clade of ancient vertebrates: the gut microbiota of sea turtles and its relationship to their phylogenetic history

Scheelings, T. F., Moore, R. J., Van, T. T. H., Klaassen, M., & Reina, R. D. (2020) · Animal Microbiome · doi:10.1186/s42523-020-00034-8 · Cited by 65 · see citing works

Dense sampling of ethnic groups within African countries reveals fine-scale genetic structure and extensive historical admixture

Bird, N., Ormond, L., Awah, P. K., Caldwell, E. F., Connell, B., Elamin, M., Fadlelmola, F. M., Fomine, F. L. M., López, S., MacEachern, S., et al. (2023) · Science Advances · doi:10.1126/sciadv.abq2616 · Cited by 63 · see citing works

Stop the Abuse of Time! Strict Temporal Banding is not the Future of Rank-Based Classifications in Fungi (Including Lichens) and Other Organisms

Lücking, R. (2019) · Critical Reviews in Plant Sciences · doi:10.1080/07352689.2019.1650517 · Cited by 67 · see citing works

Archaic Hominin Introgression in Africa Contributes to Functional Salivary MUC7 Genetic Variation

Xu, D., Pavlidis, P., Taşkent, R. Ö., Alachiotis, N., Flanagan, C., DeGiorgio, M., Blekhman, R., Rühl, S., & Gökçümen, Ö. (2017) · Molecular Biology and Evolution · doi:10.1093/molbev/msx206 · Cited by 62 · see citing works

The emergence, spread, and termination of the Early Later Stone Age event in South Africa and southern Namibia

Bousman, C. B., & Brink, J. S. (2017) · Quaternary International · doi:10.1016/j.quaint.2017.11.033 · Cited by 60 · see citing works

On holes and strings: Earliest displays of human adornment in the Middle Palaeolithic

Mayer, D. E. B., Groman-Yaroslavski, I., Bar‐Yosef, O., Hershkovitz, I., Kampen-Hasday, A., Vandermeersch, B., Zaidner, Y., & Weinstein‐Evron, M. (2020) · PLoS ONE · doi:10.1371/journal.pone.0234924 · Cited by 59 · see citing works

Male-biased migration from East Africa introduced pastoralism into southern Africa

Vicente, M., Lankheet, I., Russell, T., Hollfelder, N., Coetzee, V., Soodyall, H., de Jongh, M., & Schlebusch, C. M. (2021) · BMC Biology · doi:10.1186/s12915-021-01193-z · Cited by 59 · see citing works

Evolutionary Genetics and Admixture in African Populations

Pfennig, A., Petersen, L. N., Kachambwa, P., & Lachance, J. (2023) · Genome Biology and Evolution · doi:10.1093/gbe/evad054 · Cited by 61 · see citing works

Y-Chromosome Variation in Southern African Khoe-San Populations Based on Whole-Genome Sequences

Naidoo, T., Xu, J., Vicente, M., Malmström, H., Soodyall, H., Jakobsson, M., & Schlebusch, C. M. (2020) · Genome Biology and Evolution · doi:10.1093/gbe/evaa098 · Cited by 55 · see citing works

Variation in hunting weaponry for more than 300,000 years: A tip cross-sectional area study of Middle Stone Age points from southern Africa

Lombard, M. (2021) · Quaternary Science Reviews · doi:10.1016/j.quascirev.2021.107021 · Cited by 54 · see citing works

African genetic diversity provides novel insights into evolutionary history and local adaptations

Choudhury, A., Aron, S., Sengupta, D., Hazelhurst, S., & Ramsay, M. (2018) · Human Molecular Genetics · doi:10.1093/hmg/ddy161 · Cited by 54 · see citing works

Connections, culture and environments around 100 000 years ago at Klasies River main site

Wurz, S., Bentsen, S. E., Reynard, J. P., Pletzen-Vos, L. V., Brenner, M. J., Mentzer, S. M., Pickering, R., & Green, H. E. (2018) · Quaternary International · doi:10.1016/j.quaint.2018.03.039 · Cited by 54 · see citing works

First Peoples in a New World

Meltzer, D. J. (2021) · Cambridge University Press eBooks · doi:10.1017/9781108632867 · Cited by 63 · see citing works

Genomic Insights into the Demographic History of Southern ChinesePreprint

Huang, X., Xia, Z., Bin, X., He, G., Guo, J., Lin, C., Yin, L., Zhao, J., Ma, Z., Ma, F., et al. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.11.08.373225 · Cited by 54 · see citing works

Quantifying and reducing spurious alignments for the analysis of ultra-short ancient DNA sequences

de Filippo, C., Meyer, M., & Prüfer, K. (2018) · BMC Biology · doi:10.1186/s12915-018-0581-9 · Cited by 53 · see citing works

Grand Transitions

Smil, V. (2021) · doi:10.1093/oso/9780190060664.001.0001 · Cited by 56 · see citing works

Thriving in the Thirstland: New Stone Age sites from the Middle Kalahari, Botswana

Coulson, S. D., Staurset, S., Mothulatshipi, S., Burrough, S. L., Nash, D. J., & Thomas, D. S. G. (2022) · Quaternary Science Reviews · doi:10.1016/j.quascirev.2022.107695 · Cited by 52 · see citing works

Reconstruction of the human amylase locus reveals ancient duplications seeding modern-day variation

Yilmaz, F., Karageorgiou, C., Kim, K., Pajic, P., Scheer, K., Beck, C. R., Torregrossa, A., Lee, C., Gökçümen, Ö., Audano, P. A., et al. (2024) · Science · doi:10.1126/science.adn0609 · Cited by 51 · see citing works

Whole genomes from Angola and Mozambique inform about the origins and dispersals of major African migrations

Tallman, S., Sungo, M. D. D., Saranga, S., & Beleza, S. S. (2023) · Nature Communications · doi:10.1038/s41467-023-43717-x · Cited by 52 · see citing works

Taxonomic and Metabolic Incongruence in the Ancient Genus Streptomyces

Chevrette, M. G., Carlos‐Shanley, C., Louie, K., Bowen, B. P., Northen, T. R., & Currie, C. R. (2019) · Frontiers in Microbiology · doi:10.3389/fmicb.2019.02170 · Cited by 50 · see citing works

Pollen-interpreted palaeoenvironments associated with the Middle and Late Pleistocene peopling of Southern Africa

Scott, L., & Neumann, F. H. (2018) · Quaternary International · doi:10.1016/j.quaint.2018.02.036 · Cited by 50 · see citing works

Genome-wide variation in the Angolan Namib Desert reveals unique pre-Bantu ancestry

Oliveira, S., Fehn, A., Amorim, B., Stoneking, M., & Rocha, J. (2023) · Science Advances · doi:10.1126/sciadv.adh3822 · Cited by 48 · see citing works

The Combinatorial Creature: Cortical Phenotypes within and across Lifetimes

Krubitzer, L. A., & Prescott, T. J. (2018) · Trends in Neurosciences · doi:10.1016/j.tins.2018.08.002 · Cited by 47 · see citing works

Along the Indian Ocean Coast: Genomic Variation in Mozambique Provides New Insights into the Bantu Expansion

Semo, A., Gayà‐Vidal, M., Fortes‐Lima, C., Alard, B., Oliveira, S., Almeida, J., Prista, A., Damasceno, A. A. M., Fehn, A., Schlebusch, C. M., et al. (2019) · Molecular Biology and Evolution · doi:10.1093/molbev/msz224 · Cited by 49 · see citing works

Genetics and Material Culture Support Repeated Expansions into Paleolithic Eurasia from a Population Hub Out of Africa

Vallini, L., Marciani, G., Aneli, S., Bortolini, E., Benazzi, S., Pievani, T., & Pagani, L. (2022) · Genome Biology and Evolution · doi:10.1093/gbe/evac045 · Cited by 46 · see citing works

Evolution of Homo in the Middle and Late Pleistocene

Harvati, K., & Reyes‐Centeno, H. (2022) · Journal of Human Evolution · doi:10.1016/j.jhevol.2022.103279 · Cited by 43 · see citing works

Genetic continuity, isolation, and gene flow in Stone Age Central and Eastern Europe

Mattila, T. M., Svensson, E., Juras, A., Günther, T., Kashuba, N., Ala‐Hulkko, T., Chyleński, M., McKenna, J., Pospieszny, Ł., Constantinescu, M., et al. (2023) · Communications Biology · doi:10.1038/s42003-023-05131-3 · Cited by 39 · see citing works

The emergence of the Levallois technology in the Levant: A view from the Early Middle Paleolithic site of Misliya Cave, Israel

Zaidner, Y., & Weinstein‐Evron, M. (2020) · Journal of Human Evolution · doi:10.1016/j.jhevol.2020.102785 · Cited by 43 · see citing works

Ancient genomes from southern Africa pushes modern human divergence beyond 260,000 years agoPreprint

Schlebusch, C. M., Malmström, H., Günther, T., Sjödin, P., Coutinho, A., Edlund, H., Munters, A. R., Steyn, M., Soodyall, H., Lombard, M., et al. (2017) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/145409 · Cited by 25 · see citing works

Ancient DNA pushes human emergence back

Zahn, L. M. (2017) · Science · doi:10.1126/science.358.6363.604-s

Human demographic history : Insights on the human past based on genomes from Southern through Central Africa

Breton, G. (2020) · KTH Publication Database DiVA (KTH Royal Institute of Technology) · Cited by 4 · see citing works

Genetic Divergence Within Southern Africa During the Later Stone Age

Al-Hindi, D. R., Reynolds, A. W., & Henn, B. M. (2022) · Vertebrate paleobiology and paleoanthroplogy series/Vertebrate paleobiology and paleoanthropology series · doi:10.1007/978-3-031-07426-4_3 · Cited by 5 · see citing works

The genetic prehistory of southern Africa

Pickrell, J. K., Patterson, N. J., Barbieri, C., Berthold, F., Gerlach, L., Güldemann, T., Kure, B., Mpoloka, S. W., Nakagawa, H., Naumann, C., et al. (2012) · Nature Communications · doi:10.1038/ncomms2140 · Cited by 342 · see citing works