Genomic evidence for the Pleistocene and recent population history of Native Americans
Open accessAbstract
Genetic history of Native Americans: Several theories have been put forth as to the origin and timing of when Native American ancestors entered the Americas. To clarify this controversy, Raghavan et al. examined the genomic variation among ancient and modern individuals from Asia and the Americas. There is no evidence for multiple waves of entry or recurrent gene flow with Asians in northern populations. The earliest migrations occurred no earlier than 23,000 years ago from Siberian ancestors. Amerindians and Athabascans originated from a single population, splitting approximately 13,000 years ago. Science , this issue 10.1126/science.aab3884
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Another study using ancient and modern DNA reaffirmed the single-migration model for all Native Americans, detecting the same signal of gene flow from populations related to East Asians and, indirectly, to Australo-Melanesians but interpreting it as a later event.
“However, another study using ancient and modern DNA reaffirmed the single-migration model for all Native Americans, detecting the same signal of gene flow from populations related to East Asians and, indirectly, to Australo-Melanesians but interpreting it as a later event.”
From Ancient DNA and the rewriting of human history: be sparing with Occam’s razor (2016) · cites this paper as [38]
Native Americans appear to have diverged from Siberian ancestors ~20,000 ya, with another diversification occurring ~13,000 ya in the Americas leading to 'northern' and 'southern' Native American branches.
“Native Americans appear to have diverged from Siberian ancestors ~20,000 ya, with another diversification occurring ~13,000 ya in the Americas leading to ‘northern’ and ‘southern’ Native American branches [38].”
From Ancient DNA and the rewriting of human history: be sparing with Occam’s razor (2016) · cites this paper as [38]
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Ancient DNA and the rewriting of human history: be sparing with Occam’s razor
Haber, M., Mezzavilla, M., Xue, Y., & Tyler-Smith, C. (2016) · Genome Biology · doi:10.1186/s13059-015-0866-z · Cited by 1,924 · see citing works
Self-citationInsights into human genetic variation and population history from 929 diverse genomes
Bergström, A., McCarthy, S. A., Hui, R., Almarri, M. A., Ayub, Q., Danecek, P., Chen, Y., Felkel, S., Hallast, P., Kamm, J., et al. (2020) · Science · doi:10.1126/science.aay5012 · Cited by 1,020 · see citing works
Self-citationTracing the peopling of the world through genomics
Nielsen, R., Akey, J. M., Jakobsson, M., Pritchard, J. K., Tishkoff, S., & Willerslev, E. (2017) · Nature · doi:10.1038/nature21347 · Cited by 728 · see citing works
Self-citationThe prehistoric peopling of Southeast Asia
McColl, H., Racimo, F., Vinner, L., Demeter, F., Gakuhari, T., Moreno-Mayar, J. V., van Driem, G., Gram Wilken, U., Seguin-Orlando, A., de la Fuente Castro, C., et al. (2018) · Science · doi:10.1126/science.aat3628 · Cited by 517 · see citing works
Self-citationArchaeogenomic evidence reveals prehistoric matrilineal dynasty
Kennett, D. J., Plog, S., George, R. J., Culleton, B. J., Watson, A. S., Skoglund, P., Rohland, N., Mallick, S., Stewardson, K., Kistler, L., et al. (2017) · Nature Communications · doi:10.1038/ncomms14115 · Cited by 301 · see citing works
Ancient Genomics of Modern Humans: The First Decade
Skoglund, P., & Mathieson, I. (2018) · Annual Review of Genomics and Human Genetics · doi:10.1146/annurev-genom-083117-021749 · Cited by 246 · see citing works
Origins and genetic legacies of the Caribbean Taino
Schroeder, H., Sikora, M., Gopalakrishnan, S., Cassidy, L. M., Maisano Delser, P., Sandoval Velasco, M., Schraiber, J. G., Rasmussen, S., Homburger, J. R., Ávila-Arcos, M. C., et al. (2018) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1716839115 · Cited by 126 · see citing works
Self-citationHuman evolution: a tale from ancient genomes
Llamas, B., Willerslev, E., & Orlando, L. (2017) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2015.0484 · Cited by 100 · see citing works
Self-citationQuantifying and reducing spurious alignments for the analysis of ultra-short ancient DNA sequences
de Filippo, C., Meyer, M., & Prüfer, K. (2018) · BMC Biology · doi:10.1186/s12915-018-0581-9 · Cited by 53 · see citing works
Population history and gene divergence in native Mexicans inferred from 76 human exomes
Ávila-Arcos, M. C., McManus, K. F., Sandoval, K., Rodríguez-Rodríguez, J. E., Villa-Islas, V., Martin, A. R., Luisi, P., Peñaloza-Espinosa, R. I., Eng, C., Huntsman, S., et al. (2020) · Molecular Biology and Evolution · doi:10.1093/molbev/msz282 · Cited by 50 · see citing works
Self-citationAncient Rapanui genomes reveal resilience and pre-European contact with the Americas
Moreno-Mayar, J. V., Sousa da Mota, B., Higham, T., Klemm, S., Gorman Edmunds, M., Stenderup, J., Iraeta-Orbegozo, M., Laborde, V., Heyer, E., Torres Hochstetter, F., et al. (2024) · Nature · doi:10.1038/s41586-024-07881-4 · Cited by 20 · see citing works
“58,90–98.”
Self-citation
- Authors
- Raghavan, M., Steinrücken, M., Harris, K., Schiffels, S., Rasmussen, S., DeGiorgio, M., Albrechtsen, A., Valdiosera, C., Ávila-Arcos, M. C., Malaspinas, A.-S., Eriksson, A., Moltke, I., Metspalu, M., Homburger, J. R., Wall, J., Cornejo, O. E., Moreno-Mayar, J. V., Korneliussen, T. S., Pierre, T., Rasmussen, M., Campos, P. F., Damgaard, P. D. B., Allentoft, M. E., Lindo, J., Metspalu, E., Rodríguez-Varela, R., Mansilla, J., Henrickson, C., Seguin-Orlando, A., Malmström, H., Stafford, T., Shringarpure, S. S., Moreno-Estrada, A., Karmin, M., Tambets, K., Bergström, A., Xue, Y., Warmuth, V., Friend, A. D., Singarayer, J., Valdes, P., Balloux, F., Leboreiro, I., Vera, J. L., Rangel-Villalobos, H., Pettener, D., Luiselli, D., Davis, L. G., Heyer, E., Zollikofer, C. P. E., Ponce de León, M. S., Smith, C. I., Grimes, V., Pike, K.-A., Deal, M., Fuller, B. T., Arriaza, B., Standen, V., Luz, M. F., Ricaut, F., Guidon, N., Osipova, L., Voevoda, M. I., Posukh, O. L., Balanovsky, O., Lavryashina, M., Bogunov, Y., Khusnutdinova, E., Gubina, M., Balanovska, E., Fedorova, S., Litvinov, S., Malyarchuk, B., Derenko, M., Mosher, M. J., Archer, D., Cybulski, J., Petzelt, B., Mitchell, J., Worl, R., Norman, P. J., Parham, P., Kemp, B. M., Kivisild, T., Tyler-Smith, C., Sandhu, M. S., Crawford, M., Villems, R., Smith, D. G., Waters, M. R., Goebel, T., Johnson, J. R., Malhi, R. S., Jakobsson, M., Meltzer, D. J., Manica, A., Durbin, R., Bustamante, C. D., Song, Y. S., Nielsen, R., & Willerslev, E.
- Affiliations
- University of Copenhagen (DK)
- University of Massachusetts Amherst (US)
- University of California, Berkeley (US)
- Wellcome Sanger Institute (GB)
- Technical University of Denmark (DK)
- Pennsylvania State University (US)
- Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5–7, 1350 Copenhagen, Denmark.
- University of Cambridge (GB)
- Estonian Biocentre (EE)
- Stanford University (US)
- University of California, San Francisco (US)
- Washington State University (US)
- University of Illinois Urbana-Champaign (US)
- Centro Mixto, Universidad Complutense de Madrid–Instituto de Salud Carlos III de Evolución y Comportamiento Humano, Madrid, Spain.
- Instituto Nacional de Antropología e Historia, Moneda 13, Centro, Cuauhtémoc, 06060 Mexico City, Mexico.
- University of Utah (US)
- Uppsala University (SE)
- Department of Genetics, School of Medicine, Stanford University, 300 Pasteur Drive, Lane Building, Room L331, Stanford, CA 94305, USA.
- University of Reading (GB)
- University of Bristol (GB)
- Genetics Institute, University College London, Gower Street, London WC1E 6BT, UK.
- National Institute of Anthropology and History (MX)
- Escuela Nacional de AntropologÍa e Historia, Periférico Sur y Zapote s/n Colonia Isidro Fabela, Tlalpan, Isidro Fabela, 14030 Mexico City, Mexico.
- Instituto de Investigación en Genética Molecular, Universidad de Guadalajara, Ocotlán, Mexico.
- University of Bologna (IT)
- Oregon State University (US)
- Museum National d'Histoire Naturelle, CNRS, Université Paris 7 Diderot, Sorbonne Paris Cité, Sorbonne Universités, Unité Eco-Anthropologie et Ethnobiologie (UMR7206), Paris, France.
- University of Zurich (CH)
- Anthropological Institute and Museum, University of Zürich, Winterthurerstrasse 190, 8057 Zürich, Switzerland.
- La Trobe University (AU)
- Memorial University of Newfoundland (CA)
- University of California, Irvine (US)
- University of Tarapacá (CL)
- Fundação Museu do Homem Americano (BR)
- Laboratoire d’Anthropologie Moléculaire et Imagérie de Synthèse UMR-5288, CNRS, Université de Toulouse, 31073 Toulouse, France.
- Fundação Museu do Homem Americano, Centro Cultural Sérgio Motta, Campestre, 64770-000 Sao Raimundo Nonato, Brazil.
- Novosibirsk State University (RU)
- Russian Academy of Sciences (RU)
- Research Centre for Medical Genetics (RU)
- Kemerovo State University (RU)
- Vavilov Institute of General Genetics, Gubkina 3, 119333 Moscow, Russia.
- Institute of Biochemistry and Genetics, Ufa Scientific Center of Russian Academy of Sciences, Prospekt Oktyabrya 71, 450054 Ufa, Russia.
- Institute of Cytology and Genetics (RU)
- Department of Molecular Genetics, Yakut Scientific Centre of Complex Medical Problems, Sergelyahskoe Shosse 4, 677010 Yakutsk, Russia.
- Western Washington University (US)
- Coast Mountain College (CA)
- Western University (CA)
- Metlakatla Treaty Office, Post Office Box 224, Prince Rupert, BC V8J 3P6, Canada.
- Sealaska Heritage Institute (US)
- Stanford Medicine (US)
- Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton CB10 1SA, UK.
- MRC Laboratory of Molecular Biology (GB)
- University of Kansas (US)
- University of California, Davis (US)
- Texas A&M University (US)
- Santa Barbara Museum of Natural History (US)
- Corresponding author
- Raghavan, Maanasa
- Steinrücken, Matthias
- Harris, Kelley
- Schiffels, Stephan
- Rasmussen, Simon
- DeGiorgio, Michael
- Albrechtsen, Anders
- Valdiosera, Cristina
- Malaspinas, Anna-Sapfo
- Song, Yun S.
- Nielsen, Rasmus
- Willerslev, Eske
- ORCID
- Raghavan, Maanasa
- Steinrücken, Matthias
- Harris, Kelley
- Schiffels, Stephan
- Rasmussen, Simon
- DeGiorgio, Michael
- Albrechtsen, Anders
- Valdiosera, Cristina
- Malaspinas, Anna-Sapfo
- Eriksson, Anders
- Moltke, Ida
- Metspalu, Mait
- Homburger, Julian R.
- Wall, Jeff
- Cornejo, Omar E.
- Moreno-Mayar, J. Víctor
- Korneliussen, Thorfinn S.
- Rasmussen, Morten
- Campos, Paula F.
- Allentoft, Morten E.
- Lindo, John
- Metspalu, Ene
- Malmström, Helena
- Shringarpure, Suyash S.
- Karmin, Monika
- Tambets, Kristiina
- Bergström, Anders
- Friend, Andrew D.
- Singarayer, Joy
- Valdes, Paul
- Leboreiro, Ilán
- Pettener, Davide
- Luiselli, Donata
- Davis, Loren G.
- Zollikofer, Christoph P. E.
- Smith, Colin I.
- Grimes, Vaughan
- Fuller, Benjamin T.
- Arriaza, Bernardo
- Standen, Vivien
- Osipova, Ludmila
- Posukh, Olga L.
- Gubina, Marina
- Balanovska, Elena
- Litvinov, Sergey
- Malyarchuk, Boris
- Derenko, Miroslava
- Mosher, M. J.
- Cybulski, Jerome
- Mitchell, Joycelynn
- Norman, Paul J.
- Parham, Peter
- Kemp, Brian M.
- Kivisild, Toomas
- Villems, Richard
- Smith, David Glenn
- Goebel, Ted
- Johnson, John R.
- Malhi, Ripan S.
- Jakobsson, Mattias
- Meltzer, David J.
- Manica, Andrea
- Durbin, Richard
- Bustamante, Carlos D.
- Nielsen, Rasmus
- Willerslev, Eske
- Venue
- Science
- Published
- 2015-08-21
- Volume
- 349
- Issue
- 6250
- Pages
- aab3884-aab3884
- ISSN
- 0036-8075 (ISSN-L)
- 1095-9203
- PMC
- PMC4733658
- OpenAlex
- W2104124522
- Cited by
- 540
- References
- 189
- Citations by year
- 2026: 20 · 2025: 32 · 2024: 37 · 2023: 36 · 2022: 46 · 2021: 69 · 2020: 58 · 2019: 56 · 2018: 66 · 2017: 69 · 2016: 41 · 2015: 9 · 2013: 1
- FWCI
- 41.71
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Science (publishedVersion)
- PubMed (publishedVersion)
- Research at the University of Copenhagen (University of Copenhagen) (publishedVersion)
- PubMed Central (acceptedVersion)
- KU ScholarWorks (University of Kansas) (acceptedVersion, other-oa)
- HAL (submittedVersion, other-oa)
- Archivio istituzionale della ricerca (Alma Mater Studiorum Università di Bologna) (submittedVersion, other-oa)
- eScholarship (California Digital Library) (submittedVersion)
- MPG.PuRe (Max Planck Society) (submittedVersion, other-oa)
- UCL Discovery (University College London) (submittedVersion)
- eScholarship (California Digital Library) (submittedVersion, cc-by-nc-nd)
- IRIS (submittedVersion)
- Research Portal (King's College London) (submittedVersion)
- Technical University of Denmark, DTU Orbit (Technical University of Denmark, DTU) (submittedVersion)
- MPG.PuRe (Max Planck Society) (submittedVersion)
- King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology) (submittedVersion)
- Bristol Research (University of Bristol) (submittedVersion, other-oa)
- Griffith Research Online (submittedVersion)
- SERVAL (Université de Lausanne) (submittedVersion)
- UEA Digital Repository (University of East Anglia) (submittedVersion)
- Zurich Open Repository and Archive (University of Zurich) (submittedVersion)
- Funders
- National Science Foundation (DMS-1201234, BCS-1025139)
- National Institutes of Health (R01-GM094402, R01-AI17892, 2R01HG003229-09)
- Social Science Research Council of Canada
- Wenner-Gren Foundations
- Wellcome Trust (98051)
- Washington State University
- European Research Council (ERC-2011-AdG 295733, 261213)
- Biotechnology and Biological Sciences Research Council (BB/H005854/1)
- Australian Research Council (FT0992258)
- French National Research Agency (ANR-14-CE31-0013-01)
- Swiss National Science Foundation (PBSKP3_143529)
- Danish National Research Foundation
- Estonian Science Foundation (8973)
- Russian Foundation for Basic Research (13-06-00670, 14-0400725, 14-06-00384)
- Consejo Nacional de Ciencia y Tecnología (Mexico)
- Lundbeck Foundation
- Ministerio de Ciencia e Innovación (MICINN) (CGL2009-12703-C03-03)
- MICINN (BES-2010-030127)
- Russian Science Fund (14-04-00827)
- European Union European Regional Development Fund (IUT24-1)
- Marie Curie Actions (300554)
- Bernice Peltier Huber Charitable Trust
- Stanford Graduate Fellowship
- Packard Fellowship for Science and Engineering
- Presidium of Russian Academy of Sciences Molecular and Cell Biology Programme
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Forensic and Genetic Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic diversity and population structure
- Social Sciences › Anthropology › Pleistocene-Era Hominins and Archaeology
- Keywords
- peopling of the Americas, Athabascan, Native Americans, gene flow, East Asian ancestry, population divergence, ancient genomes
- MeSH terms
- Americas, Humans, Indians, North American, Models, Genetic, Siberia, Genomics, History, Ancient, Gene Flow, Human Migration
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
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