Cited by 454Wound Healing and TreatmentsSingle-cell and spatial transcriptomicsHair Growth and Disorders

Spatial and Single-Cell Transcriptional Profiling Identifies Functionally Distinct Human Dermal Fibroblast Subpopulations

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Philippeos, Christina, Telerman, Stephanie B., Oulès, Bénédicte, Pisco, Angela O., Shaw, Tanya J., Elgueta, Raul, Lombardi, Giovanna, Driskell, Ryan R. +3 more·2018·Journal of Investigative Dermatology

Abstract

Previous studies have shown that mouse dermis is composed of functionally distinct fibroblast lineages. To explore the extent of fibroblast heterogeneity in human skin, we used a combination of comparative spatial transcriptional profiling of human and mouse dermis and single-cell transcriptional profiling of human dermal fibroblasts. We show that there are at least four distinct fibroblast populations in adult human skin, not all of which are spatially segregated. We define markers permitting their isolation and show that although marker expression is lost in culture, different fibroblast subpopulations retain distinct functionality in terms of Wnt signaling, responsiveness to IFN-γ, and ability to support human epidermal reconstitution when introduced into decellularized dermis. These findings suggest that ex vivo expansion or in vivo ablation of specific fibroblast subpopulations may have therapeutic applications in wound healing and diseases characterized by excessive fibrosis.

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Crossref · 10.1016/j.jid.2018.01.016

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  • Fibroblasts coordinate the function of the immune system via production of chemokines and cytokines, with heterogeneity in cytokines produced by different fibroblasts.

    “coordinate the function of the immune system via the production of chemokines and cytokines, although it should be noted that there is heterogeneity in the cytokines produced by different fibroblasts16–20.”

    From A framework for advancing our understanding of cancer-associated fibroblasts (2020) · cites this paper as [19]

    The Results sections report different expression of the chemokine genes Cxcl1 and Cxcl12 in mouse fibroblast subpopulations and different expression of inflammatory mediators in cultured human fibroblast subpopulations (page unavailable). The Discussion also describes differential expression of immunoregulatory genes, but the paper does not establish that these fibroblasts coordinate immune-system function through production of chemokines and cytokines, or directly measure heterogeneity in cytokine production. (LLM, conf=0.86)

    Experimental — accuracy not yet measured
  • Overwhelming evidence points to a degree of specialization among CAFs, which may reflect the increasingly appreciated specialization of normal fibroblasts.

    “Overwhelming evidence now points to a degree of specialization among CAFs, which may reflect the increasingly appreciated specialization of normal fibroblasts19,50.”

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Research works printed but not linked: 67

  1. Bondjers C. Kalén M. Hellström M. Scheidl S.J. Abramsson A. Renner O. Transcription profiling of platelet-derived growth factor-B-deficient mouse embryos identifies RGS5 as a novel marker for pericytes and vascular smooth muscle cells Am J Pathol 162 2003 721 729 12598306 PMC1868109
  2. Boonacker E. Van Noorden C.J. The multifunctional or moonlighting protein CD26/DPPIV Eur J Cell Biol 82 2003 53 73 12647932
  3. Brocks T. Fedorchenko O. Schliermann N. Stein A. Moll U.M. Seegobin S. Macrophage migration inhibitory factor protects from nonmelanoma epidermal tumors by regulating the number of antigen-presenting cells in skin FASEB J 31 2017 526 543 27825106 PMC6137604
  4. Collins C.A. Kretzschmar K. Watt F.M. Reprogramming adult dermis to a neonatal state through epidermal activation of beta-catenin Development 138 2011 5189 5199 22031549 PMC3210498
  5. Donati G. Proserpio V. Lichtenberger B.M. Natsuga K. Sinclair R. Fujiwara H. Epidermal Wnt/beta-catenin signaling regulates adipocyte differentiation via secretion of adipogenic factors Proc Natl Acad Sci USA 111 2014 E1501 E1509 24706781 PMC3992657
  6. Driskell R.R. Jahoda C.A. Chuong C.M. Watt F.M. Horsley V. Defining dermal adipose tissue Exp Dermatol 23 2014 629 631 24841073 PMC4282701
  7. Driskell R.R. Juneja V.R. Connelly J.T. Kretzschmar K. Tan D.W. Watt F.M. Clonal growth of dermal papilla cells in hydrogels reveals intrinsic differences between Sox2-positive and -negative cells in vitro and in vivo J Invest Dermatol 132 2012 1084 1093 22189784 PMC3306894
  8. Driskell R.R. Lichtenberger B.M. Hoste E. Kretzschmar K. Simons B.D. Charalambous M. Distinct fibroblast lineages determine dermal architecture in skin development and repair Nature 504 2013 277 281 24336287 PMC3868929
  9. Driskell R.R. Watt F.M. Understanding fibroblast heterogeneity in the skin Trends Cell Biol 25 2015 92 99 25455110
  10. Dulauroy S. Di Carlo S.E. Langa F. Eberl G. Peduto L. Lineage tracing and genetic ablation of ADAM12(+) perivascular cells identify a major source of profibrotic cells during acute tissue injury Nat Med 18 2012 1262 1270 22842476
  11. El-Domyati M. Attia S. Saleh F. Brown D. Birk D.E. Gasparro F. Intrinsic aging vs. photoaging: a comparative histopathological, immunohistochemical, and ultrastructural study of skin Exp Dermatol 11 2002 398–40 12366692
  12. Enshell-Seijffers D. Lindon C. Morgan B.A. The serine protease Corin is a novel modifier of the Agouti pathway Development 135 2008 217 225 18057101 PMC2186067
  13. Festa E. Fretz J. Berry R. Schmidt B. Rodeheffer M. Horowitz M. Adipocyte lineage cells contribute to the skin stem cell niche to drive hair cycling Cell 146 2011 761 771 21884937 PMC3298746
  14. Findley M.K. Koval M. Regulation and roles for claudin-family tight junction proteins IUBMB life 61 2009 431 437 19319969 PMC2708117
  15. Fitzgerald J. Holden P. Hansen U. The expanded collagen VI family: new chains and new questions Connect Tissue Res 54 2013 345 350 23869615 PMC5248970
  16. Fitzgerald J. Rich C. Zhou F.H. Hansen U. Three novel collagen VI chains, alpha4(VI), alpha5(VI), and alpha6(VI) J Biol Chem 283 2008 20170 20180 18400749
  17. Gao H. Volat F. Sandhow L. Galitzky J. Nguyen T. Esteve D. CD36 is a marker of human adipocyte progenitors with pronounced adipogenic and triglyceride accumulation potential Stem Cells 35 2017 1799 1814 28470788
  18. Gara S.K. Grumati P. Urciuolo A. Bonaldo P. Kobbe B. Koch M. Three novel collagen VI chains with high homology to the alpha3 chain J Biol Chem 283 2008 10658 10670 18276594
  19. Gilchrest B.A. A review of skin ageing and its medical therapy Br J Dermatol 135 1996 867 875 8977705
  20. Grzeschik K.H. Bornholdt D. Oeffner F. König A. del Carmen Boente M. Enders H. Deficiency of PORCN, a regulator of Wnt signaling, is associated with focal dermal hypoplasia Nat Genet 39 2007 833 835 17546031
  21. Gurtner G.C. Werner S. Barrandon Y. Longaker M.T. Wound repair and regeneration Nature 453 2008 314 321 18480812
  22. Harper R.A. Grove G. Human skin fibroblasts derived from papillary and reticular dermis: differences in growth potential in vitro Science 204 1979 526 527 432659
  23. Hu M.S. Longaker M.T. Dipeptidyl peptidase-4, wound healing, scarring, and fibrosis Plast Reconstr Surg 138 2016 1026 1031 27782998
  24. Janson D.G. Saintigny G. van Adrichem A. Mahe C. El Ghalbzouri A. Different gene expression patterns in human papillary and reticular fibroblasts J Invest Dermatol 132 2012 2565 2572 22696053
  25. Jensen K.B. Driskell R.R. Watt F.M. Assaying proliferation and differentiation capacity of stem cells using disaggregated adult mouse epidermis Nat Protoc 5 2010 898 911 20431535
  26. Jones P.H. Watt F.M. Separation of human epidermal stem cells from transit amplifying cells on the basis of differences in integrin function and expression Cell 73 1993 713 724 8500165
  27. Jumper N. Paus R. Bayat A. Functional histopathology of keloid disease Histol Histopathol 30 2015 1033 1057 25900252
  28. Kalluri R. Zeisberg M. Fibroblasts in cancer Nat Rev Cancer 6 2006 39 401 16572188
  29. Karakikes I. Morrison I.E. O’Toole P. Metodieva G. Navarrete C.V. Gomez J. Interaction of HLA-DR and CD74 at the cell surface of antigen-presenting cells by single particle image analysis FASEB J 26 2012 4886 4896 22889831
  30. Kim D. Pertea G. Trapnell C. Pimentel H. Kelley R. Salzberg S.L. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions Genome Biol 14 2013 R36 23618408 PMC4053844
  31. Kirsner R.S. Marston W.A. Snyder R.J. Lee T.D. Cargill D.I. Slade H.B. Spray-applied cell therapy with human allogeneic fibroblasts and keratinocytes for the treatment of chronic venous leg ulcers: a phase 2, multicentre, double-blind, randomised, placebo-controlled trial Lancet 380 2012 977 985 22863328
  32. Kishimoto J. Burgeson R.E. Morgan B.A. Wnt signaling maintains the hair-inducing activity of the dermal papilla Genes Dev 14 2000 1181 1185 10817753 PMC316619
  33. Kluger M.S. Clark P.R. Tellides G. Gerke V. Pober J.S. Claudin-5 controls intercellular barriers of human dermal microvascular but not human umbilical vein endothelial cells Arterioscler Thromb Vasc Biol 33 2013 489 500 23288152 PMC3655806
  34. Kretzschmar K. Watt F.M. Lineage tracing Cell 148 2012 33 45 22265400
  35. Kretzschmar K. Weber C. Driskell R.R. Calonje E. Watt F.M. Compartmentalized epidermal activation of beta-catenin differentially affects lineage reprogramming and underlies tumor heterogeneity Cell Rep 14 2016 269 281 26771241 PMC4713864
  36. Kuniyasu A. Ohgami N. Hayashi S. Miyazaki A. Horiuchi S. Nakayama H. CD36-mediated endocytic uptake of advanced glycation end products (AGE) in mouse 3T3-L1 and human subcutaneous adipocytes FEBS Lett 537 2003 85 90 12606036
  37. Lee D.Y. Cho K.H. The effects of epidermal keratinocytes and dermal fibroblasts on the formation of cutaneous basement membrane in three-dimensional culture systems Arc Dermatol Res 296 2005 296 302 15650892
  38. Lee J. Tumbar T. Hairy tale of signaling in hair follicle development and cycling Semin Cell Dev Biol 23 2012 906 916 22939761 PMC3496046
  39. Lee J.Y. Yang C.C. Chao S.C. Wong T.W. Histopathological differential diagnosis of keloid and hypertrophic scar Am J Dermatopathol 26 2004 379 384 15365369
  40. Liao Y. Smyth G.K. Shi W. featureCounts: an efficient general purpose program for assigning sequence reads to genomic features Bioinformatics 30 2014 923 930 24227677
  41. Lichtenberger B.M. Mastrogiannaki M. Watt F.M. Epidermal beta-catenin activation remodels the dermis via paracrine signalling to distinct fibroblast lineages Nat Commun 7 2016 10537 26837596 PMC4742837
  42. Martinelli-Boneschi F. Colombi M. Castori M. Devigili G. Eleopra R. Malik R.A. COL6A5 variants in familial neuropathic chronic itch Brain 140 2017 555 556 28073787
  43. Mastrogiannaki M. Lichtenberger B.M. Reimer A. Collins C.A. Driskell R.R. Watt F.M. β-catenin stabilization in skin fibroblasts causes fibrotic lesions by preventing adipocyte differentiation of the reticular dermis J Invest Dermatol 136 2016 1130 1142 26902921 PMC4874948
  44. Myung P.S. Takeo M. Ito M. Atit R.P. Epithelial Wnt ligand secretion is required for adult hair follicle growth and regeneration J Invest Dermatol 133 2013 31 41 22810306 PMC3479363
  45. Natarajan A. Lemos D.R. Rossi F.M. Fibro/adipogenic progenitors: a double-edged sword in skeletal muscle regeneration Cell Cycle 9 2010 2045 2046 20505371
  46. Ng Y.Y. Baert M.R. de Haas E.F. Pike-Overzet K. Staal F.J. Isolation of human and mouse hematopoietic stem cells Methods Mol Biol 506 2009 13 21 19110616
  47. Ohtola J. Myers J. Akhtar-Zaidi B. Zuzindlak D. Sandesara P. Yeh K. beta-Catenin has sequential roles in the survival and specification of ventral dermis Development 135 2008 2321 2329 18539925 PMC2732188
  48. Paquet-Fifield S. Schlüter H. Li A. Aitken T. Gangatirkar P. Blashki D. A role for pericytes as microenvironmental regulators of human skin tissue regeneration J Clin Invest 119 2009 2795 2806 19652362 PMC2735900
  49. Parsonage G. Filer A.D. Haworth O. Nash G.B. Rainger G.E. Salmon M. A stromal address code defined by fibroblasts Trends Immunol 26 2005 150 156 15745857 PMC3121558
  50. Patel A.S. Smith A. Nucera S. Biziato D. Saha P. Attia R.Q. TIE2-expressing monocytes/macrophages regulate revascularization of the ischemic limb EMBO Mol Med 5 2013 858 869 23653322 PMC3779448
  51. Picelli S. Faridani O.R. Björklund A.K. Winberg G. Sagasser S. Sandberg R. Full-length RNA-seq from single cells using Smart-seq2 Nat Protoc 9 2014 171 181 24385147
  52. Rendl M. Lewis L. Fuchs E. Molecular dissection of mesenchymal-epithelial interactions in the hair follicle PLoS Biol 3 2005 e331 16162033 PMC1216328
  53. Rheinwald J.G. Green H. Serial cultivation of strains of human epidermal keratinocytes: the formation of keratinizing colonies from single cells Cell 6 1975 331 343 1052771
  54. Rikimaru K. Moles J.P. Watt F.M. Correlation between hyperproliferation and suprabasal integrin expression in human epidermis reconstituted in culture Exp Dermatol 6 1997 214 221 9450623
  55. Rinkevich Y. Walmsley G.G. Hu M.S. Maan Z.N. Newman A.M. Drukker M. Skin fibrosis. Identification and isolation of a dermal lineage with intrinsic fibrogenic potential Science 348 2015 aaa2151 PMC5088503 25883361
  56. Rivera-Gonzalez G.C. Shook B.A. Andrae J. Holtrup B. Bollag K. Betsholtz C. Skin Adipocyte Stem Cell Self-Renewal Is Regulated by a PDGFA/AKT-Signaling Axis Cell Stem Cell 19 2016 738 751 27746098 PMC5135565
  57. Rognoni E. Gomez C. Pisco A.O. Rawlins E.L. Simons B.D. Watt F.M. Inhibition of beta-catenin signalling in dermal fibroblasts enhances hair follicle regeneration during wound healing Development 143 2016 2522 2535 27287810 PMC4958333
  58. Saalbach A. Kraft R. Herrmann K. Haustein U.F. Anderegg U. The monoclonal antibody AS02 recognizes a protein on human fibroblasts being highly homologous to Thy-1 Arch Dermatol Res 290 1998 360 366 9749990
  59. Sabatelli P. Gara S.K. Grumati P. Urciuolo A. Gualandi F. Curci R. Expression of the collagen VI alpha5 and alpha6 chains in normal human skin and in skin of patients with collagen VI-related myopathies J Invest Dermatol 131 2011 99 107 20882040
  60. Sennett R. Rendl M. Mesenchymal-epithelial interactions during hair follicle morphogenesis and cycling Semin Cell Dev Biol 23 2012 917 927 22960356 PMC3496047
  61. Silva-Vargas V. Lo Celso C. Giangreco A. Ofstad T. Prowse D.M. Braun K.M. Beta-catenin and Hedgehog signal strength can specify number and location of hair follicles in adult epidermis without recruitment of bulge stem cells Dev Cell 9 2005 121 131 15992546
  62. Sorrell J.M. Baber M.A. Caplan A.I. Human dermal fibroblast subpopulations; differential interactions with vascular endothelial cells in coculture: nonsoluble factors in the extracellular matrix influence interactions Wound Repair Regen 16 2008 300 309 18318814
  63. Sorrell J.M. Baber M.A. Caplan A.I. Site-matched papillary and reticular human dermal fibroblasts differ in their release of specific growth factors/cytokines and in their interaction with keratinocytes J Cell Physiol 200 2004 134 145 15137066
  64. Tabib T. Morse C. Wang T. Chen W. Lafyatis R. SFRP2/DPP4 and FMO1/LSP1 define major fibroblast populations in human skin J Invest Dermatol 138 2018 802 810 PMC7444611 29080679
  65. Watt F.M. Lo Celso C. Silva-Vargas V. Epidermal stem cells: an update Curr Opin Genet Dev 16 2006 518 524 16919447
  66. Watt F.M. Jensen K.B. Epidermal stem cell diversity and quiescence EMBO Mol Med 1 2009 260 267 20049729 PMC2850061
  67. Wong T. Gammon L. Liu L. Mellerio J.E. Dopping-Hepenstal P.J. Pacy J. Potential of fibroblast cell therapy for recessive dystrophic epidermolysis bullosa J Invest Dermatol 128 2008 2179 2189 18385758

Cited by

Sorted by citations

Authors
Philippeos, C., Telerman, S. B., Oulès, B., Pisco, A. O., Shaw, T. J., Elgueta, R., Lombardi, G., Driskell, R. R., Soldin, M., Lynch, M. D., & Watt, F. M.
Affiliations
  • Guy's Hospital (GB)
  • King's College London (GB)
  • National Health Service (GB)
Corresponding author
Watt, Fiona M.
Venue
Journal of Investigative Dermatology
Publisher
Elsevier BV
Published
2018-04
Volume
138
Issue
4
Pages
811-825
ISSN
0022-202X (ISSN-L)
OpenAlex
W2785713700
Cited by
454
References
3
Citations by year
2026: 46 · 2025: 46 · 2024: 63 · 2023: 45 · 2022: 68 · 2021: 68 · 2020: 62 · 2019: 38 · 2018: 18
FWCI
39.75
Type
journal article
Language
en
Open access
Locations
  • Journal of Investigative Dermatology (publishedVersion, cc-by)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • Research Portal (King's College London) (submittedVersion, cc-by)
Funders
  • Wellcome Trust
  • King's College Hospital NHS Foundation Trust
  • National Institute for Health and Care Research (CL-2013-17-002)
  • Academy of Medical Sciences
  • King's College London
  • European Commission
  • Medical Research Council (MR/P018823/1, MR/K019732/2)
Topics
  • Health Sciences › Medicine › Rehabilitation › Wound Healing and Treatments
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Single-cell and spatial transcriptomics
  • Health Sciences › Medicine › Urology › Hair Growth and Disorders
Keywords
dermal fibroblasts, fibroblast heterogeneity, human skin, spatial transcriptomics, single-cell RNA sequencing, Wnt signaling, fibrosis, wound healing, fibroblast markers
MeSH terms
Animals, Animals, Newborn, Cells, Cultured, Extracellular Matrix, Fibroblasts, Flow Cytometry, Humans, RNA, Wound Healing, Signal Transduction, Polymerase Chain Reaction, Gene Expression Regulation, Developmental, Dermis, Wnt Proteins, Mice

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