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Structures of SPOP-Substrate Complexes: Insights into Molecular Architectures of BTB-Cul3 Ubiquitin Ligases
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In the largest E3 ligase subfamily, Cul3 binds a BTB domain, and an associated protein-interaction domain such as MATH recruits substrates for ubiquitination. Here, we present biochemical and structural analyses of the MATH-BTB protein, SPOP. We define a SPOP-binding consensus (SBC) and determine structures revealing recognition of SBCs from the phosphatase Puc, the transcriptional regulator Ci, and the chromatin component MacroH2A. We identify a dimeric SPOP-Cul3 assembly involving a conserved helical structure C-terminal of BTB domains, which we call "3-box" due to its facilitating Cul3 binding and its resemblance to F-/SOCS-boxes in other cullin-based E3s. Structural flexibility between the substrate-binding MATH and Cul3-binding BTB/3-box domains potentially allows a SPOP dimer to engage multiple SBCs found within a single substrate, such as Puc. These studies provide a molecular understanding of how MATH-BTB proteins recruit substrates to Cul3 and how their dimerization and conformational variability may facilitate avid interactions with diverse substrates.
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“BTB-containing E3 ligases are typically distinguished by the presence of a 3-box motif that enables high-affinity binding of Cullin 3 (refs 74,75 ).”
From Targeted protein degradation: expanding the toolbox (2019) · cites this paper as [75]
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Pinkas, D. M., Sanvitale, C., Bufton, J. C., Sorrell, F. J., Solcan, N., Chalk, R., Doutch, J., & Bullock, A. N. (2017) · Biochemical Journal · doi:10.1042/bcj20170527 · Cited by 93
The emerging role of speckle-type POZ protein (SPOP) in cancer development
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Small-Molecule Targeting of E3 Ligase Adaptor SPOP in Kidney Cancer
Guo, Z., Zheng, T., Chen, B., Luo, C., Ouyang, S., Gong, S., Li, J., Mao, L., Lian, F., Yang, Y., et al. (2016) · Cancer Cell · doi:10.1016/j.ccell.2016.08.003 · Cited by 96
Self-citationSPOP mutations promote p62/SQSTM1-dependent autophagy and Nrf2 activation in prostate cancer
Shi, Q., Jin, X., Zhang, P., Li, Q., Lv, Z., Ding, Y., He, H., Wang, Y., He, Y., Zhao, X., et al. (2022) · Cell Death and Differentiation · doi:10.1038/s41418-021-00913-w · Cited by 93
Fbw7 dimerization determines the specificity and robustness of substrate degradationPreprint
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The novel BET‐CBP/p300 dual inhibitor NEO2734 is active in SPOP mutant and wild‐type prostate cancer
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Self-citationDimerization quality control ensures neuronal development and survival
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Uncovering Ubiquitin and Ubiquitin-like Signaling Networks
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Cullin 3 Ubiquitin Ligases in Cancer Biology: Functions and Therapeutic Implications
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SPOP-containing complex regulates SETD2 stability and H3K36me3-coupled alternative splicing
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Functional analysis of Cullin 3 E3 ligases in tumorigenesis
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Metadata
- Authors
- Zhuang, M., Calabrese, M. F., Liu, J., Waddell, M. B., Nourse, A., Hammel, M., Miller, D. J., Walden, H., Duda, D. M., Seyedin, S. N., Hoggard, T., Harper, J. W., White, K. P., & Schulman, B. A.
- Affiliations
- St. Jude Children's Research Hospital (US)
- University of Chicago (US)
- Lawrence Berkeley National Laboratory (US)
- University of Wisconsin System (US)
- Harvard University (US)
- Corresponding author
- Schulman, Brenda A.
- ORCID
- Venue
- Molecular Cell
- Publisher
- Elsevier BV
- Published
- 2009-10
- Volume
- 36
- Issue
- 1
- Pages
- 39-50
- ISSN
- 1097-2765 (ISSN-L)
- PMC
- PMC2847577
- OpenAlex
- W1993550226
- Cited by
- 486
- References
- 60
- Citations by year
- 2026: 29 · 2025: 38 · 2024: 27 · 2023: 35 · 2022: 39 · 2021: 50 · 2020: 45 · 2019: 32 · 2018: 25 · 2017: 28 · 2016: 23 · 2015: 25 · 2014: 28 · 2013: 24 · 2012: 14
- FWCI
- 4.66
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Molecular Cell (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Funders
- Howard Hughes Medical Institute (DRG 2021-9)
- National Cancer Institute (CA92584, P01CA092584, P30CA021765)
- National Institute of General Medical Sciences (R01GM070565, R01GM069530, GM070565)
- National Center for Research Resources (RR 15301, P41RR015301)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Ubiquitin and proteasome pathways
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Degradation and Inhibitors
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Structural Biology › Enzyme Structure and Function
- Keywords
- SPOP, BTB domain, CUL3, E3 ubiquitin ligase, MATH domain, substrate recognition, macroH2A, protein dimerization, SOCS box
- MeSH terms
- Amino Acid Sequence, Animals, DNA-Binding Proteins, Drosophila melanogaster, Histones, Humans, Models, Molecular, Mutation, Nuclear Proteins, Peptide Fragments, Phosphoprotein Phosphatases, Protein Binding, Recombinant Fusion Proteins, Repressor Proteins, Transcription Factors, Consensus Sequence, Crystallography, X-Ray, Molecular Chaperones, Protein Structure, Quaternary, Drosophila Proteins, Ubiquitin-Protein Ligases, Cullin Proteins, Adaptor Proteins, Signal Transducing, Protein Interaction Domains and Motifs, Ubiquitination, Protein Multimerization, Co-Repressor Proteins
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