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Single-cell omics in plant biology: mechanistic insights and applications for crop improvement

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Recent progresses in plant single-cell transcriptomics

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Mapping circuit dynamics during function and dysfunction

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Leveraging Single-Cell Sequencing for Chimeric Antigen Receptor T Cell Therapies

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The Sequencing Quality Control 2 study: establishing community standards for sequencing in precision medicine

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Combining LIANA and Tensor-cell2cell to decipher cell-cell communication across multiple samples

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Single-cell RNA sequencing of cultured human endometrial CD140b+CD146+ perivascular cells highlights the importance of in vivo microenvironment

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Personalized genome assembly for accurate cancer somatic mutation discovery using tumor-normal paired reference samples

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Workflow Optimization for Identification of Female Germline or Oogonial Stem Cells in Human Ovarian Cortex Using Single-Cell RNA Sequence Analysis

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Single‐Cell Transcriptomics Reveals Longevity Immune Remodeling Features Shared by Centenarians and Their Offspring

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Supervised learning of high-confidence phenotypic subpopulations from single-cell data

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Unifying comprehensive genomics and transcriptomics in individual cells to illuminate oncogenic and drug resistance mechanismsPreprint

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Artificial intelligence and systems biology analysis in stem cell research and therapeutics development

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Protein-level batch-effect correction enhances robustness in MS-based proteomics

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A systematic review of single-cell RNA sequencing applications and innovations

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Evaluation of false positive and false negative errors in targeted next generation sequencing

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Expression quantitative trait locus studies in the era of single-cell omics

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Deep Learning of Dual Plasma Fingerprints for High‐Performance Infection Classification

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Mapping the tumor immune landscape: single-cell RNA sequencing in cancer immunotherapy

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cellCounts: an R function for quantifying 10x Chromium single-cell RNA sequencing data

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Sequence modification on demand: search and replace tools for precise gene editing in plants

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A benchmarking study of copy number variation inference methods using single-cell RNA-sequencing data

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AI-Driven Chemometrics for Multi-omics Data Integration: Advances, Challenges, and Future Directions

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Multi-Objective Genetic Algorithm for Cluster Analysis of Single-Cell Transcriptomes

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Assessing parameter efficient methods for pre-trained language model in annotating scRNA-seq data

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Multidimensional decoding of colorectal cancer heterogeneity: Artificial intelligence-enabled precision exploration of single-cell and spatial transcriptomics

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DeepFilter: A Deep Learning Based Variant Filter for VarDict

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Single Cell Transcriptomics

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Data Matrix Normalization and Merging Strategies Minimize Batch-specific Systemic Variation in scRNA-Seq DataPreprint

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Comprehensive study on the differential extraction and comparison of bioactive health potential of the Broccoli (Brassica oleracea)

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Proximal tubule responses to injury: interrogation by single-cell transcriptomics

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Identification of key gene signatures for predicting chemo-immunotherapy efficacy in extensive-stage small-cell lung cancer using machine learning

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DOT1L promotes expression of CD44 through the Wnt/β-catenin signaling pathway in early gastric carcinoma

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A map of bat virus receptors derived from single-cell multiomics

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Multi-species integration, alignment and annotation of single-cell RNA-seq data with CAMEX

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A new era of precision diagnosis and treatment for lung cancer: artificial intelligence-driven multimodal data integration and clinical applications

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Single-cell analysis in endometrial research

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Single-cell RNA-sequencing and subcellular spatial transcriptomics facilitate the translation of liver microphysiological systems for regulatory application

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SCITUNA: single-cell data integration tool using network alignment

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Decoding the archipelago: single-cell biomarkers rechart the molecular geography of acute myeloid leukemia

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Benchmarking UMI-based single cell RNA-sequencing preprocessing workflowsPreprint

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Dissecting tumor cell programs through group biology estimation in clinical single-cell transcriptomicsPreprint

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Critical view on oligo(dT)-based RNA-seq: bias arising, modeling, and mitigating

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Dissecting tumor cell programs through group biology estimation in clinical single-cell transcriptomics

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Assessing tissue-specific gene expression of essential genes from human and mouse

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Epigenomic, transcriptomic, and proteomic characterization of breast cancer cell line reference samples

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Integrin α5β1‐mediated multicellular crosstalk in the tumor microenvironment drives bladder cancer progression and reveals targetable vulnerabilities

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Multi-organelle signatures map cell-state diversity and metabolic adaptation in tissues

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Single-Cell Sequencing in Cancer Research: Challenges and Opportunities

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BK Channels Function in Nematocyst Discharge from Vibration-Sensitive Cnidocyte Supporting Cell Complexes of the Sea Anemone Diadumene lineata

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Idiosyncratic and generic single nuclei and spatial transcriptional patterns in papillary and anaplastic thyroid cancersPreprint

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An Ensemble Machine Learning Approach for Benchmarking and Selection of scRNA-seq Integration Methods

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Single Cell RNA-Sequencing and Its Application in Livestock Animals

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Epigenomic, transcriptomic and proteomic characterizations of reference samplesPreprint

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Additional file 1 of Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies

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Additional file 13 of Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies

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Additional file 15 of Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies

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A Comprehensive Multi-Center Cross-platform Benchmarking Study of Single-cell RNA Sequencing Using Reference SamplesPreprint

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A multi-center cross-platform single-cell RNA sequencing reference dataset

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