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Dual Strategies for Argonaute2-Mediated Biogenesis of Erythroid miRNAs Underlie Conserved Requirements for Slicing in Mammals

Jee, David, Yang, Jr-Shiuan, Park, Sun-Mi, Farmer, D’Juan T., Wen, Jiayu, Chou, Timothy, Chow, Arthur, McManus, Michael T., Kharas, Michael G., Lai, Eric C.·2018·Molecular Cell
DOI 10.1016/j.molcel.2017.12.027PMC PMC5824974
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Research works printed but not linked: 63

  1. Alexander, 2011, Regulation of DMD pathology by an ankyrin-encoded miRNA, Skelet. Muscle, 1, 27, 10.1186/2044-5040-1-27 · DOI
  2. Alexander, 2014, MicroRNA-486-dependent modulation of DOCK3/PTEN/AKT signaling pathways improves muscular dystrophy-associated symptoms, J. Clin. Invest., 124, 2651, 10.1172/JCI73579 · DOI
  3. Azuma-Mukai, 2008, Characterization of endogenous human Argonautes and their miRNA partners in RNA silencing, Proc. Natl. Acad. Sci. USA, 105, 7964, 10.1073/pnas.0800334105 · DOI
  4. Bianchi, 2015, MYB controls erythroid versus megakaryocyte lineage fate decision through the miR-486-3p-mediated downregulation of MAF, Cell Death Differ., 22, 1906, 10.1038/cdd.2015.30 · DOI
  5. Cheloufi, 2010, A dicer-independent miRNA biogenesis pathway that requires Ago catalysis, Nature, 465, 584, 10.1038/nature09092 · DOI · Paper page
  6. Cifuentes, 2010, A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity, Science, 328, 1694, 10.1126/science.1190809 · DOI
  7. Cullen, 2013, Is RNA interference a physiologically relevant innate antiviral immune response in mammals?, Cell Host Microbe, 14, 374, 10.1016/j.chom.2013.09.011 · DOI
  8. Czech, 2011, Small RNA sorting: matchmaking for Argonautes, Nat. Rev. Genet., 12, 19, 10.1038/nrg2916 · DOI · Paper page
  9. de Boer, 2003, Transgenic mice with hematopoietic and lymphoid specific expression of Cre, Eur. J. Immunol., 33, 314, 10.1002/immu.200310005 · DOI · Paper page
  10. Diederichs, 2007, Dual role for argonautes in microRNA processing and posttranscriptional regulation of microRNA expression, Cell, 131, 1097, 10.1016/j.cell.2007.10.032 · DOI
  11. Ding, 2014, Antiviral RNA silencing in mammals: no news is not good news, Cell Rep., 9, 795, 10.1016/j.celrep.2014.10.029 · DOI
  12. Dueck, 2012, microRNAs associated with the different human Argonaute proteins, Nucleic Acids Res., 40, 9850, 10.1093/nar/gks705 · DOI · Paper page
  13. Faehnle, 2013, The making of a slicer: activation of human Argonaute-1, Cell Rep., 3, 1901, 10.1016/j.celrep.2013.05.033 · DOI
  14. Flemr, 2013, A retrotransposon-driven dicer isoform directs endogenous small interfering RNA production in mouse oocytes, Cell, 155, 807, 10.1016/j.cell.2013.10.001 · DOI
  15. Hauptmann, 2013, Turning catalytically inactive human Argonaute proteins into active slicer enzymes, Nat. Struct. Mol. Biol., 20, 814, 10.1038/nsmb.2577 · DOI
  16. Juvvuna, 2012, Argonaute identity defines the length of mature mammalian microRNAs, Nucleic Acids Res., 40, 6808, 10.1093/nar/gks293 · DOI
  17. Karginov, 2010, Diverse endonucleolytic cleavage sites in the mammalian transcriptome depend upon microRNAs, Drosha, and additional nucleases, Mol. Cell, 38, 781, 10.1016/j.molcel.2010.06.001 · DOI
  18. Kawamata, 2009, Structural determinants of miRNAs for RISC loading and slicer-independent unwinding, Nat. Struct. Mol. Biol., 16, 953, 10.1038/nsmb.1630 · DOI · Paper page
  19. Kim, 2012, miR-486-5p induces replicative senescence of human adipose tissue-derived mesenchymal stem cells and its expression is controlled by high glucose, Stem Cells Dev., 21, 1749, 10.1089/scd.2011.0429 · DOI
  20. Kim, 2016, Re-evaluation of the roles of DROSHA, Export in 5, and DICER in microRNA biogenesis, Proc. Natl. Acad. Sci. USA, 113, E1881, 10.1073/pnas.1602532113 · DOI
  21. Kozomara, 2014, miRBase: annotating high confidence microRNAs using deep sequencing data, Nucleic Acids Res., 42, D68, 10.1093/nar/gkt1181 · DOI · Paper page
  22. Kuchenbauer, 2011, Comprehensive analysis of mammalian miRNA∗ species and their role in myeloid cells, Blood, 118, 3350, 10.1182/blood-2010-10-312454 · DOI
  23. Lee, 2014, Highly efficient ligation of small RNA molecules for microRNA quantitation by high-throughput sequencing, J. Vis. Exp., 10.3791/52095-v · DOI
  24. Leuschner, 2006, Cleavage of the siRNA passenger strand during RISC assembly in human cells, EMBO Rep., 7, 314, 10.1038/sj.embor.7400637 · DOI
  25. Liu, 2004, Argonaute2 is the catalytic engine of mammalian RNAi, Science, 305, 1437, 10.1126/science.1102513 · DOI · Paper page
  26. Liu, 2014, A microRNA precursor surveillance system in quality control of microRNA synthesis, Mol. Cell, 55, 868, 10.1016/j.molcel.2014.07.017 · DOI
  27. Lulli, 2013, MicroRNA-486-3p regulates γ-globin expression in human erythroid cells by directly modulating BCL11A, PLoS ONE, 8, e60436, 10.1371/journal.pone.0060436 · DOI
  28. Ma, 2010, MicroRNA activity is suppressed in mouse oocytes, Curr. Biol., 20, 265, 10.1016/j.cub.2009.12.042 · DOI
  29. Martin, 2011, Cutadapt removes adapter sequences from high-throughput sequencing reads, Embnet.journal, 7, 10, 10.14806/ej.17.1.200 · DOI · Paper page
  30. Matranga, 2005, Passenger-strand cleavage facilitates assembly of siRNA into Ago2-containing RNAi enzyme complexes, Cell, 123, 607, 10.1016/j.cell.2005.08.044 · DOI · Paper page
  31. Meister, 2004, Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs, Mol. Cell, 15, 185, 10.1016/j.molcel.2004.07.007 · DOI · Paper page
  32. Miyoshi, 2005, Slicer function of Drosophila Argonautes and its involvement in RISC formation, Genes Dev., 19, 2837, 10.1101/gad.1370605 · DOI
  33. Nakanishi, 2013, Eukaryote-specific insertion elements control human ARGONAUTE slicer activity, Cell Rep., 3, 1893, 10.1016/j.celrep.2013.06.010 · DOI
  34. O’Carroll, 2007, A Slicer-independent role for Argonaute 2 in hematopoiesis and the microRNA pathway, Genes Dev., 21, 1999, 10.1101/gad.1565607 · DOI
  35. Okamura, 2007, The mirtron pathway generates microRNA-class regulatory RNAs in Drosophila, Cell, 130, 89, 10.1016/j.cell.2007.06.028 · DOI
  36. Okamura, 2008, The regulatory activity of microRNA∗ species has substantial influence on microRNA and 3′ UTR evolution, Nat. Struct. Mol. Biol., 15, 354, 10.1038/nsmb.1409 · DOI · Paper page
  37. Oshlack, 2010, From RNA-seq reads to differential expression results, Genome Biol., 11, 220, 10.1186/gb-2010-11-12-220 · DOI
  38. Park, 2017, Human Argonaute3 has slicer activity, Nucleic Acids Res., 45, 11867, 10.1093/nar/gkx916 · DOI
  39. Patrick, 2010, Defective erythroid differentiation in miR-451 mutant mice mediated by 14-3-3zeta, Genes Dev., 24, 1614, 10.1101/gad.1942810 · DOI
  40. Peng, 2013, Insulin growth factor signaling is regulated by microRNA-486, an underexpressed microRNA in lung cancer, Proc. Natl. Acad. Sci. USA, 110, 15043, 10.1073/pnas.1307107110 · DOI
  41. Rand, 2004, Biochemical identification of Argonaute 2 as the sole protein required for RNA-induced silencing complex activity, Proc. Natl. Acad. Sci. USA, 101, 14385, 10.1073/pnas.0405913101 · DOI
  42. Rand, 2005, Argonaute2 cleaves the anti-guide strand of siRNA during RISC activation, Cell, 123, 621, 10.1016/j.cell.2005.10.020 · DOI
  43. Rasmussen, 2010, The miR-144/451 locus is required for erythroid homeostasis, J. Exp. Med., 207, 1351, 10.1084/jem.20100458 · DOI · Paper page
  44. Schürmann, 2013, Molecular dissection of human Argonaute proteins by DNA shuffling, Nat. Struct. Mol. Biol., 20, 818, 10.1038/nsmb.2607 · DOI
  45. Shaham, 2015, MicroRNA-486-5p is an erythroid oncomiR of the myeloid leukemias of Down syndrome, Blood, 125, 1292, 10.1182/blood-2014-06-581892 · DOI · Paper page
  46. Shin, 2010, Expanding the microRNA targeting code: functional sites with centered pairing, Mol. Cell, 38, 789, 10.1016/j.molcel.2010.06.005 · DOI · Paper page
  47. Small, 2010, Regulation of PI3-kinase/Akt signaling by muscle-enriched microRNA-486, Proc. Natl. Acad. Sci. USA, 107, 4218, 10.1073/pnas.1000300107 · DOI
  48. Stein, 2015, Essential role for endogenous siRNAs during meiosis in mouse oocytes, PLoS Genet., 11, e1005013, 10.1371/journal.pgen.1005013 · DOI
  49. Suh, 2010, MicroRNA function is globally suppressed in mouse oocytes and early embryos, Curr. Biol., 20, 271, 10.1016/j.cub.2009.12.044 · DOI
  50. Sun, 2013, Adult-specific functions of animal microRNAs, Nat. Rev. Genet., 14, 535, 10.1038/nrg3471 · DOI
  51. Tam, 2008, Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes, Nature, 453, 534, 10.1038/nature06904 · DOI
  52. Wang, 2009, Distinct passenger strand and mRNA cleavage activities of human Argonaute proteins, Nat. Struct. Mol. Biol., 16, 1259, 10.1038/nsmb.1712 · DOI
  53. Wang, 2015, MicroRNA-486 regulates normal erythropoiesis and enhances growth and modulates drug response in CML progenitors, Blood, 125, 1302, 10.1182/blood-2014-06-581926 · DOI
  54. Watanabe, 2008, Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes, Nature, 453, 539, 10.1038/nature06908 · DOI
  55. Wen, 2015, Analysis of nearly one thousand mammalian mirtrons reveals novel features of dicer substrates, PLoS Comput. Biol., 11, e1004441, 10.1371/journal.pcbi.1004441 · DOI
  56. Yang, 2010, Dicer-independent, Ago2-mediated microRNA biogenesis in vertebrates, Cell Cycle, 9, 4455, 10.4161/cc.9.22.13958 · DOI
  57. Yang, 2010, Conserved vertebrate mir-451 provides a platform for Dicer-independent, Ago2-mediated microRNA biogenesis, Proc. Natl. Acad. Sci. USA, 107, 15163, 10.1073/pnas.1006432107 · DOI
  58. Yang, 2011, Widespread regulatory activity of vertebrate microRNA∗ species, RNA, 17, 312, 10.1261/rna.2537911 · DOI · Paper page
  59. Yang, 2012, Functional parameters of Dicer-independent microRNA biogenesis, RNA, 18, 945, 10.1261/rna.032938.112 · DOI
  60. Yekta, 2004, MicroRNA-directed cleavage of HOXB8 mRNA, Science, 304, 594, 10.1126/science.1097434 · DOI · Paper page
  61. Yoda, 2013, Poly(A)-specific ribonuclease mediates 3′-end trimming of Argonaute2-cleaved precursor microRNAs, Cell Rep., 5, 715, 10.1016/j.celrep.2013.09.029 · DOI
  62. Yu, 2010, miR-451 protects against erythroid oxidant stress by repressing 14-3-3zeta, Genes Dev., 24, 1620, 10.1101/gad.1942110 · DOI
  63. Zhang, 2011, miR-191 regulates mouse erythroblast enucleation by down-regulating Riok3 and Mxi1, Genes Dev., 25, 119, 10.1101/gad.1998711 · DOI

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Metadata

Authors
Jee, D., Yang, J.-S., Park, S.-M., Farmer, D. T., Wen, J., Chou, T., Chow, A., McManus, M. T., Kharas, M. G., & Lai, E. C.
Venue
Molecular Cell
Publisher
Elsevier BV
Published
2018-01
Volume
69
Issue
2
Pages
265-278.e6
ISSN
1097-2765
DOI
10.1016/j.molcel.2017.12.027
PMC
PMC5824974
Cited by
75
References
1
Language
en
Licence
Funders
  • Susan and Peter Solomon Divisional Genomics Program
  • NIH (R01-GM083300, R01-HL135564)
  • MSK (P30-CA008748)

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