Student or educator? Sign up with your school email and get 6 months of Pro free.
CoChat
Sign Up
Cited by 125

The DOI matches its Crossref record; 3 of the 3 references it cites were found in a registry or an index.

HMGB1-Facilitated p53 DNA Binding Occurs via HMG-Box/p53 Transactivation Domain Interaction, Regulated by the Acidic Tail

Rowell, John P., Simpson, Kathryn L., Stott, Katherine, Watson, Matthew, Thomas, Jean O.·2012·Structure
DOI 10.1016/j.str.2012.09.004
Open this paper in CoChat — free account

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1016/j.str.2012.09.004

Cites

3 of 3 references verified0 citation errors · 0 not checkable

Statistics

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

Cites

Research works printed but not linked: 72

  1. Agresti, 2003, HMGB proteins and gene expression, Curr. Opin. Genet. Dev., 13, 170, 10.1016/S0959-437X(03)00023-6 · DOI · Paper page
  2. Aizawa, 1994, Stimulation of transcription in cultured cells by high mobility group protein 1: essential role of the acidic carboxyl-terminal region, Biochemistry, 33, 14690, 10.1021/bi00253a006 · DOI
  3. Banerjee, 2003, The acidic C-terminal domain and A-box of HMGB-1 regulates p53-mediated transcription, Nucleic Acids Res., 31, 3236, 10.1093/nar/gkg412 · DOI
  4. Bochkareva, 2005, Single-stranded DNA mimicry in the p53 transactivation domain interaction with replication protein A, Proc. Natl. Acad. Sci. USA, 102, 15412, 10.1073/pnas.0504614102 · DOI · Paper page
  5. Boonyaratanakornkit, 1998, High-mobility group chromatin proteins 1 and 2 functionally interact with steroid hormone receptors to enhance their DNA binding in vitro and transcriptional activity in mammalian cells, Mol. Cell. Biol., 18, 4471, 10.1128/MCB.18.8.4471 · DOI · Paper page
  6. Brickman, 1999, Interactions between an HMG-1 protein and members of the Rel family, Proc. Natl. Acad. Sci. USA, 96, 10679, 10.1073/pnas.96.19.10679 · DOI
  7. Brünger, 1998, Crystallography & NMR system: A new software suite for macromolecular structure determination, Acta Crystallogr. D Biol. Crystallogr., 54, 905, 10.1107/S0907444998003254 · DOI · Paper page
  8. Bustin, 1996, High-mobility-group chromosomal proteins: architectural components that facilitate chromatin function, Prog. Nucleic Acid Res. Mol. Biol., 54, 35, 10.1016/S0079-6603(08)60360-8 · DOI · Paper page
  9. Catez, 2004, Network of dynamic interactions between histone H1 and high-mobility-group proteins in chromatin, Mol. Cell. Biol., 24, 4321, 10.1128/MCB.24.10.4321-4328.2004 · DOI · Paper page
  10. Cato, 2008, The interaction of HMGB1 and linker histones occurs through their acidic and basic tails, J. Mol. Biol., 384, 1262, 10.1016/j.jmb.2008.10.001 · DOI
  11. Cheung, 2010, DANGLE: A Bayesian inferential method for predicting protein backbone dihedral angles and secondary structure, J. Magn. Reson., 202, 223, 10.1016/j.jmr.2009.11.008 · DOI · Paper page
  12. Dawson, 2003, The N-terminal domain of p53 is natively unfolded, J. Mol. Biol., 332, 1131, 10.1016/j.jmb.2003.08.008 · DOI · Paper page
  13. Decoville, 2000, HMG boxes of DSP1 protein interact with the rel homology domain of transcription factors, Nucleic Acids Res., 28, 454, 10.1093/nar/28.2.454 · DOI
  14. Di Lello, 2006, Structure of the Tfb1/p53 complex: Insights into the interaction between the p62/Tfb1 subunit of TFIIH and the activation domain of p53, Mol. Cell, 22, 731, 10.1016/j.molcel.2006.05.007 · DOI · Paper page
  15. Dintilhac, 2002, HMGB1 interacts with many apparently unrelated proteins by recognizing short amino acid sequences, J. Biol. Chem., 277, 7021, 10.1074/jbc.M108417200 · DOI
  16. Ferreon, 2009, Cooperative regulation of p53 by modulation of ternary complex formation with CBP/p300 and HDM2, Proc. Natl. Acad. Sci. USA, 106, 6591, 10.1073/pnas.0811023106 · DOI · Paper page
  17. Grasser, 1998, DNA-binding properties of the tandem HMG boxes of high-mobility-group protein 1 (HMG1), Eur. J. Biochem., 253, 787, 10.1046/j.1432-1327.1998.2530787.x · DOI
  18. Hardman, 1995, Structure of the A-domain of HMG1 and its interaction with DNA as studied by heteronuclear three- and four-dimensional NMR spectroscopy, Biochemistry, 34, 16596, 10.1021/bi00051a007 · DOI · Paper page
  19. Imamura, 2001, Interaction with p53 enhances binding of cisplatin-modified DNA by high mobility group 1 protein, J. Biol. Chem., 276, 7534, 10.1074/jbc.M008143200 · DOI
  20. Isackson, 1979, Preferential affinity of high molecular weight high mobility group non-histone chromatin proteins for single-stranded DNA, J. Biol. Chem., 254, 5569, 10.1016/S0021-9258(18)50445-2 · doi:10.1016/s0021-9258(18)50445-2
  21. Jayaraman, 1998, High mobility group protein-1 (HMG-1) is a unique activator of p53, Genes Dev., 12, 462, 10.1101/gad.12.4.462 · DOI · Paper page
  22. Joerger, 2008, Structural biology of the tumor suppressor p53, Annu. Rev. Biochem., 77, 557, 10.1146/annurev.biochem.77.060806.091238 · DOI · Paper page
  23. Jung, 2003, Nature of full-length HMGB1 binding to cisplatin-modified DNA, Biochemistry, 42, 2664, 10.1021/bi026972w · DOI
  24. Kitayner, 2006, Structural basis of DNA recognition by p53 tetramers, Mol. Cell, 22, 741, 10.1016/j.molcel.2006.05.015 · DOI · Paper page
  25. Klemm, 1994, Crystal structure of the Oct-1 POU domain bound to an octamer site: DNA recognition with tethered DNA-binding modules, Cell, 77, 21, 10.1016/0092-8674(94)90231-3 · DOI · Paper page
  26. Knapp, 2004, The long acidic tail of high mobility group box 1 (HMGB1) protein forms an extended and flexible structure that interacts with specific residues within and between the HMG boxes, Biochemistry, 43, 11992, 10.1021/bi049364k · DOI
  27. Koradi, 1996, MOLMOL: a program for display and analysis of macromolecular structures, J. Mol. Graph., 14, 51, 10.1016/0263-7855(96)00009-4 · DOI · Paper page
  28. Kraulis, 1991, MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures, J. Appl. Crystallogr., 24, 946, 10.1107/S0021889891004399 · DOI · Paper page
  29. Laskowski, 1993, PROCHECK: a program to check the stereochemical quality of protein structures, J. Appl. Crystallogr., 26, 283, 10.1107/S0021889892009944 · DOI · Paper page
  30. Lee, 2000, Local structural elements in the mostly unstructured transcriptional activation domain of human p53, J. Biol. Chem., 275, 29426, 10.1074/jbc.M003107200 · DOI · Paper page
  31. Lee, 2000, The effect of the acidic tail on the DNA-binding properties of the HMG1,2 class of proteins: insights from tail switching and tail removal, J. Mol. Biol., 304, 135, 10.1006/jmbi.2000.4206 · doi:10.1006/jmbi.2000.4206
  32. Lehming, 1998, Chromatin components as part of a putative transcriptional repressing complex, Proc. Natl. Acad. Sci. USA, 95, 7322, 10.1073/pnas.95.13.7322 · DOI · Paper page
  33. Li, 2004, Phosphorylation on Thr-55 by TAF1 mediates degradation of p53: a role for TAF1 in cell G1 progression, Mol. Cell, 13, 867, 10.1016/S1097-2765(04)00123-6 · DOI
  34. Linge, 2003, ARIA: automated NOE assignment and NMR structure calculation, Bioinformatics, 19, 315, 10.1093/bioinformatics/19.2.315 · DOI · Paper page
  35. Livesey, 2012, p53/HMGB1 complexes regulate autophagy and apoptosis, Cancer Res., 72, 1996, 10.1158/0008-5472.CAN-11-2291 · DOI · Paper page
  36. McKinney, 2002, Efficient specific DNA binding by p53 requires both its central and C-terminal domains as revealed by studies with high-mobility group 1 protein, Mol. Cell. Biol., 22, 6797, 10.1128/MCB.22.19.6797-6808.2002 · DOI
  37. Melvin, 2004, The role of the C-terminal extension (CTE) of the estrogen receptor alpha and beta DNA binding domain in DNA binding and interaction with HMGB, J. Biol. Chem., 279, 14763, 10.1074/jbc.M313335200 · DOI
  38. Merritt, 1997, Raster3D: photorealistic molecular graphics, Methods Enzymol., 277, 505, 10.1016/S0076-6879(97)77028-9 · DOI · Paper page
  39. Metzler, 1993, Characterization of the three-dimensional solution structure of human profilin: 1H, 13C, and 15N NMR assignments and global folding pattern, Biochemistry, 32, 13818, 10.1021/bi00213a010 · DOI
  40. Nagaich, 1997, DNA bending is essential for the site-specific recognition of DNA response elements by the DNA binding domain of the tumor suppressor protein p53, J. Biol. Chem., 272, 14842, 10.1074/jbc.272.23.14842 · DOI
  41. Najima, 2005, High mobility group protein-B1 interacts with sterol regulatory element-binding proteins to enhance their DNA binding, J. Biol. Chem., 280, 27523, 10.1074/jbc.M414549200 · DOI
  42. Oda, 2000, p53AIP1, a potential mediator of p53-dependent apoptosis, and its regulation by Ser-46-phosphorylated p53, Cell, 102, 849, 10.1016/S0092-8674(00)00073-8 · DOI · Paper page
  43. Ohndorf, 1999, Basis for recognition of cisplatin-modified DNA by high-mobility-group proteins, Nature, 399, 708, 10.1038/21460 · DOI · Paper page
  44. Paull, 1993, The nonspecific DNA-binding and -bending proteins HMG1 and HMG2 promote the assembly of complex nucleoprotein structures, Genes Dev., 7, 1521, 10.1101/gad.7.8.1521 · DOI · Paper page
  45. Payet, 1997, The acidic tail of the high mobility group protein HMG-D modulates the structural selectivity of DNA binding, J. Mol. Biol., 266, 66, 10.1006/jmbi.1996.0782 · DOI
  46. Rajagopalan, 2009, Interaction between the transactivation domain of p53 and PC4 exemplifies acidic activation domains as single-stranded DNA mimics, J. Biol. Chem., 284, 21728, 10.1074/jbc.M109.006429 · DOI
  47. Schwarzinger, 2001, Sequence-dependent correction of random coil NMR chemical shifts, J. Am. Chem. Soc., 123, 2970, 10.1021/ja003760i · DOI · Paper page
  48. Sheflin, 1993, The specific interactions of HMG 1 and 2 with negatively supercoiled DNA are modulated by their acidic C-terminal domains and involve cysteine residues in their HMG 1/2 boxes, Biochemistry, 32, 3238, 10.1021/bi00064a005 · DOI
  49. Stott, 2006, Structure of a complex of tandem HMG boxes and DNA, J. Mol. Biol., 360, 90, 10.1016/j.jmb.2006.04.059 · DOI
  50. Stott, 2010, Tail-mediated collapse of HMGB1 is dynamic and occurs via differential binding of the acidic tail to the A and B domains, J. Mol. Biol., 403, 706, 10.1016/j.jmb.2010.07.045 · DOI
  51. Štros, 2010, HMGB proteins: interactions with DNA and chromatin, Biochim. Biophys. Acta, 1799, 101, 10.1016/j.bbagrm.2009.09.008 · DOI · Paper page
  52. Štros, 1994, DNA looping by the HMG-box domains of HMG1 and modulation of DNA binding by the acidic C-terminal domain, Nucleic Acids Res., 22, 1044, 10.1093/nar/22.6.1044 · DOI
  53. Teo, 1995, Differences in the DNA-binding properties of the HMG-box domains of HMG1 and the sex-determining factor SRY, Eur. J. Biochem., 230, 943
  54. Teufel, 2007, Four domains of p300 each bind tightly to a sequence spanning both transactivation subdomains of p53, Proc. Natl. Acad. Sci. USA, 104, 7009, 10.1073/pnas.0702010104 · DOI · Paper page
  55. Thomas, 1975, An octamer of histones in chromatin and free in solution, Proc. Natl. Acad. Sci. USA, 72, 2626, 10.1073/pnas.72.7.2626 · DOI · Paper page
  56. Thomas, 2001, HMG1 and 2, and related ‘architectural’ DNA-binding proteins, Trends Biochem. Sci., 26, 167, 10.1016/S0968-0004(01)01801-1 · DOI · Paper page
  57. Thomas, 2012, H1 and HMGB1: modulators of chromatin structure, Biochem. Soc. Trans., 40, 341, 10.1042/BST20120014 · DOI
  58. Ueda, 2004, Acidic C-tail of HMGB1 is required for its target binding to nucleosome linker DNA and transcription stimulation, Biochemistry, 43, 9901, 10.1021/bi035975l · DOI
  59. van Dieck, 2009, Posttranslational modifications affect the interaction of S100 proteins with tumor suppressor p53, J. Mol. Biol., 394, 922, 10.1016/j.jmb.2009.10.002 · DOI
  60. Verrijzer, 1991, POU proteins bend DNA via the POU-specific domain, EMBO J., 10, 3007, 10.1002/j.1460-2075.1991.tb07851.x · DOI
  61. Vise, 2005, NMR chemical shift and relaxation measurements provide evidence for the coupled folding and binding of the p53 transactivation domain, Nucleic Acids Res., 33, 2061, 10.1093/nar/gki336 · DOI
  62. Vranken, 2005, The CCPN data model for NMR spectroscopy: development of a software pipeline, Proteins, 59, 687, 10.1002/prot.20449 · DOI · Paper page
  63. Watson, 2007, Mapping intramolecular interactions between domains in HMGB1 using a tail-truncation approach, J. Mol. Biol., 374, 1286, 10.1016/j.jmb.2007.09.075 · DOI
  64. Webb, 1999, Structure-specific binding of the two tandem HMG boxes of HMG1 to four-way junction DNA is mediated by the A domain, J. Mol. Biol., 294, 373, 10.1006/jmbi.1999.3150 · DOI
  65. Weir, 1993, Structure of the HMG box motif in the B-domain of HMG1, EMBO J., 12, 1311, 10.1002/j.1460-2075.1993.tb05776.x · DOI · Paper page
  66. Wong, 2009, Biophysical characterizations of human mitochondrial transcription factor A and its binding to tumor suppressor p53, Nucleic Acids Res., 37, 6765, 10.1093/nar/gkp750 · DOI
  67. Wong, 2009, Physical and functional interactions between human mitochondrial single-stranded DNA-binding protein and tumour suppressor p53, Nucleic Acids Res., 37, 568, 10.1093/nar/gkn974 · DOI
  68. Xu, 2003, Regulation of p53 responses by post-translational modifications, Cell Death Differ., 10, 400, 10.1038/sj.cdd.4401182 · DOI · Paper page
  69. Zappavigna, 1996, HMG1 interacts with HOX proteins and enhances their DNA binding and transcriptional activation, EMBO J., 15, 4981, 10.1002/j.1460-2075.1996.tb00878.x · DOI · Paper page
  70. Zuiderweg, 2002, Mapping protein-protein interactions in solution by NMR spectroscopy, Biochemistry, 41, 1, 10.1021/bi011870b · DOI · Paper page
  71. Zwahlen, 1997, Methods for measurement of intermolecular NOEs by multinuclear NMR spectroscopy: application to a bacteriophage λ N-peptide/boxB RNA complex, J. Am. Chem. Soc., 119, 6711, 10.1021/ja970224q · DOI · Paper page
  72. Zwilling, 1995, High mobility group protein 2 functionally interacts with the POU domains of octamer transcription factors, EMBO J., 14, 1198, 10.1002/j.1460-2075.1995.tb07103.x · DOI · Paper page

Cited by

See all 125

Metadata

Authors
Rowell, J. P., Simpson, K. L., Stott, K., Watson, M., & Thomas, J. O.
Venue
Structure
Publisher
Elsevier BV
Published
2012-12
Volume
20
Issue
12
Pages
2014-2024
ISSN
0969-2126
DOI
10.1016/j.str.2012.09.004
Cited by
125
References
3
Language
en
Licence

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review

Data sources

Bibliographic data: Semantic Scholar, OpenAlex, Crossref.

Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).

Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.